AGFG1 12165

Name: AGFG1	Sequence: fasta or formatted (522aa)		NCBI GI: 206597509
Description: HIV-1 Rev binding protein isoform 4		Referenced in: Nucleus and Nucleolus
Other entries for this name: alt prot [584aa] HIV-1 Rev binding protein isoform 1 alt prot [560aa] HIV-1 Rev binding protein isoform 3 alt prot [562aa] HIV-1 Rev binding protein isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 12.6 66 3 C cysteine 1.0 5 1 D aspartate 3.4 18 2 E glutamate 2.3 12 2 F phenylalanine 7.1 37 1 G glycine 7.9 41 2 H histidine 1.9 10 1 I isoleucine 1.3 7 1 K lysine 5.0 26 2 L leucine 4.6 24 2 M methionine 1.5 8 1 N asparagine 4.6 24 1 P proline 7.7 40 2 Q glutamine 6.7 35 3 R arginine 2.1 11 1 S serine 14.4 75 3 T threonine 8.0 42 2 V valine 6.1 32 2 W tryptophan 0.4 2 1 Y tyrosine 1.3 7 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 HIV-1 Rev binding protein isoform 4 AGFG1 0.981 HIV-1 Rev binding protein isoform 2 AGFG1 0.972 HIV-1 Rev binding protein isoform 3 AGFG1 0.811 HIV-1 Rev binding protein isoform 1 AGFG2 0.269 ArfGAP with FG repeats 2 SMAP1 0.046 stromal membrane-associated GTPase-activating prote... SMAP1 0.045 stromal membrane-associated GTPase-activating protei... SMAP2 0.044 small ArfGAP2 NUP214 0.042 nucleoporin 214kDa ARFGAP1 0.041 ADP-ribosylation factor GTPase activating protein 1 i... ADAP1 0.041 centaurin, alpha 1 ARFGAP1 0.040 ADP-ribosylation factor GTPase activating protein 1 ... AGAP1 0.034 centaurin, gamma 2 isoform 2 AGAP1 0.034 centaurin, gamma 2 isoform 1 NUP153 0.032 nucleoporin 153kDa POM121C 0.031 POM121 membrane glycoprotein (rat)-like AGAP9 0.030 PREDICTED: ArfGAP with GTPase domain, ankyrin repea... AGAP10 0.030 PREDICTED: ArfGAP with GTPase domain, ankyrin repea... AGAP7 0.030 ArfGAP with GTPase domain, ankyrin repeat and PH do... AGAP3 0.030 centaurin, gamma 3 isoform a AGAP11 0.029 ankyrin repeat and GTPase domain Arf GTPase activat... AGAP6 0.029 centaurin, gamma-like family, member 3 AGAP4 0.029 ArfGAP with GTPase domain, ankyrin repeat and PH do... LOC100288540 0.029 PREDICTED: hypothetical protein XP_002342775 MUC21 0.029 mucin 21 ARFGAP3 0.028 ADP-ribosylation factor GTPase activating protein 3... AMOT 0.028 angiomotin isoform 2 AMOT 0.028 angiomotin isoform 1 AGAP8 0.028 ArfGAP with GTPase domain, ankyrin repeat and PH do... ACAP2 0.027 centaurin, beta 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.