Guide to the Human Genome
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Name: AGAP7 Sequence: fasta or formatted (663aa) NCBI GI: 117956373
Description:

ArfGAP with GTPase domain, ankyrin repeat and PH domain 7

Referenced in:

ADP-Ribosylation Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         44           3
 C cysteine            3.0         20           1
 D aspartate           4.7         31           2
 E glutamate           6.6         44           2
 F phenylalanine       1.8         12           1
 G glycine             5.4         36           3
 H histidine           3.2         21           2
 I isoleucine          5.3         35           2
 K lysine              5.4         36           3
 L leucine             8.6         57           3
 M methionine          2.4         16           1
 N asparagine          4.2         28           2
 P proline             5.1         34           3
 Q glutamine           5.0         33           3
 R arginine            4.7         31           2
 S serine             11.6         77           3
 T threonine           7.4         49           2
 V valine              5.1         34           2
 W tryptophan          1.7         11           1
 Y tyrosine            2.1         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ArfGAP with GTPase domain, ankyrin repeat and PH do... 
AGAP4                 0.979   ArfGAP with GTPase domain, ankyrin repeat and PH do...
AGAP8                 0.978   ArfGAP with GTPase domain, ankyrin repeat and PH do...
AGAP6                 0.960   centaurin, gamma-like family, member 3 
AGAP5                 0.955   ArfGAP with GTPase domain, ankyrin repeat and PH do...
AGAP9                 0.939   PREDICTED: ArfGAP with GTPase domain, ankyrin repea...
AGAP10                0.937   PREDICTED: ArfGAP with GTPase domain, ankyrin repea...
AGAP11                0.716   ankyrin repeat and GTPase domain Arf GTPase activat...
AGAP1                 0.592   centaurin, gamma 2 isoform 2 
AGAP1                 0.558   centaurin, gamma 2 isoform 1 
AGAP3                 0.408   centaurin, gamma 3 isoform a 
AGAP2                 0.334   centaurin, gamma 1 isoform PIKE-S 
AGAP2                 0.328   centaurin, gamma 1 isoform PIKE-L 
LOC100294038          0.245   PREDICTED: similar to centaurin, gamma-like family,...
CCNYL2                0.114   PREDICTED: cyclin Y-like 2 
CCNYL2                0.114   PREDICTED: cyclin Y-like 2 
CCNYL2                0.114   PREDICTED: cyclin Y-like 2 
ACAP3                 0.092   ArfGAP with coiled-coil, ankyrin repeat and PH doma...
ACAP2                 0.081   centaurin, beta 2 
ASAP1                 0.080   development and differentiation enhancing factor 1 [...
ACAP1                 0.079   centaurin beta1 
GIT2                  0.076   G protein-coupled receptor kinase interacting ArfGA...
GIT2                  0.076   G protein-coupled receptor kinase interacting ArfGA...
GIT2                  0.076   G protein-coupled receptor kinase interacting ArfGAP...
GIT2                  0.076   G protein-coupled receptor kinase interacting ArfGAP...
GIT2                  0.076   G protein-coupled receptor kinase interacting ArfGAP...
GIT2                  0.076   G protein-coupled receptor kinase interacting ArfGA...
GIT1                  0.074   G protein-coupled receptor kinase interactor 1 isof...
GIT1                  0.074   G protein-coupled receptor kinase interactor 1 isofo...
ASAP3                 0.070   ArfGAP with SH3 domain, ankyrin repeat and PH domai...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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