Guide to the Human Genome
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Name: AGAP1 Sequence: fasta or formatted (857aa) NCBI GI: 80978930
Description:

centaurin, gamma 2 isoform 1

Referenced in:

ADP-Ribosylation Factors

Other entries for this name:
alt prot [804aa] centaurin, gamma 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         61           2
 C cysteine            2.0         17           1
 D aspartate           4.6         39           2
 E glutamate           6.4         55           2
 F phenylalanine       1.9         16           1
 G glycine             5.8         50           3
 H histidine           2.5         21           1
 I isoleucine          5.1         44           2
 K lysine              5.0         43           3
 L leucine             8.5         73           3
 M methionine          1.5         13           1
 N asparagine          5.1         44           3
 P proline             4.8         41           3
 Q glutamine           4.7         40           3
 R arginine            6.4         55           2
 S serine             12.6        108           3
 T threonine           5.6         48           2
 V valine              6.4         55           2
 W tryptophan          1.3         11           1
 Y tyrosine            2.7         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   centaurin, gamma 2 isoform 1 
AGAP1                 0.914   centaurin, gamma 2 isoform 2 
AGAP3                 0.714   centaurin, gamma 3 isoform a 
AGAP2                 0.494   centaurin, gamma 1 isoform PIKE-S 
AGAP2                 0.473   centaurin, gamma 1 isoform PIKE-L 
AGAP11                0.463   ankyrin repeat and GTPase domain Arf GTPase activat...
AGAP7                 0.432   ArfGAP with GTPase domain, ankyrin repeat and PH do...
AGAP5                 0.326   ArfGAP with GTPase domain, ankyrin repeat and PH do...
AGAP4                 0.323   ArfGAP with GTPase domain, ankyrin repeat and PH do...
AGAP8                 0.322   ArfGAP with GTPase domain, ankyrin repeat and PH do...
AGAP6                 0.321   centaurin, gamma-like family, member 3 
AGAP9                 0.312   PREDICTED: ArfGAP with GTPase domain, ankyrin repea...
AGAP10                0.312   PREDICTED: ArfGAP with GTPase domain, ankyrin repea...
AGAP3                 0.302   centaurin, gamma 3 isoform b 
LOC100294038          0.171   PREDICTED: similar to centaurin, gamma-like family,...
ACAP3                 0.070   ArfGAP with coiled-coil, ankyrin repeat and PH doma...
GIT2                  0.063   G protein-coupled receptor kinase interacting ArfGA...
GIT2                  0.063   G protein-coupled receptor kinase interacting ArfGA...
GIT2                  0.063   G protein-coupled receptor kinase interacting ArfGAP...
GIT2                  0.063   G protein-coupled receptor kinase interacting ArfGAP...
GIT2                  0.063   G protein-coupled receptor kinase interacting ArfGAP...
GIT2                  0.063   G protein-coupled receptor kinase interacting ArfGA...
ASAP1                 0.062   development and differentiation enhancing factor 1 [...
ACAP1                 0.062   centaurin beta1 
ACAP2                 0.062   centaurin, beta 2 
GIT1                  0.060   G protein-coupled receptor kinase interactor 1 isof...
GIT1                  0.060   G protein-coupled receptor kinase interactor 1 isofo...
ASAP3                 0.055   ArfGAP with SH3 domain, ankyrin repeat and PH domai...
ASAP3                 0.055   ArfGAP with SH3 domain, ankyrin repeat and PH domain...
ASAP2                 0.054   ArfGAP with SH3 domain, ankyrin repeat and PH domai...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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