Guide to the Human Genome
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Name: AGAP9 Sequence: fasta or formatted (684aa) NCBI GI: 239744074
Description:

PREDICTED: ArfGAP with GTPase domain, ankyrin repeat and PH domain 9

Referenced in:

ADP-Ribosylation Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         46           3
 C cysteine            2.9         20           1
 D aspartate           4.4         30           2
 E glutamate           6.9         47           2
 F phenylalanine       2.2         15           1
 G glycine             5.4         37           3
 H histidine           2.8         19           2
 I isoleucine          5.1         35           2
 K lysine              5.6         38           3
 L leucine             8.2         56           3
 M methionine          2.5         17           1
 N asparagine          4.7         32           2
 P proline             5.1         35           3
 Q glutamine           5.3         36           3
 R arginine            4.7         32           2
 S serine             12.1         83           3
 T threonine           7.2         49           2
 V valine              4.8         33           2
 W tryptophan          1.6         11           2
 X unknown             0.1          1           1
 Y tyrosine            1.8         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: ArfGAP with GTPase domain, ankyrin repea... 
AGAP10                0.998   PREDICTED: ArfGAP with GTPase domain, ankyrin repea...
AGAP5                 0.960   ArfGAP with GTPase domain, ankyrin repeat and PH do...
AGAP6                 0.955   centaurin, gamma-like family, member 3 
AGAP4                 0.923   ArfGAP with GTPase domain, ankyrin repeat and PH do...
AGAP8                 0.923   ArfGAP with GTPase domain, ankyrin repeat and PH do...
AGAP7                 0.915   ArfGAP with GTPase domain, ankyrin repeat and PH do...
AGAP11                0.691   ankyrin repeat and GTPase domain Arf GTPase activat...
AGAP1                 0.566   centaurin, gamma 2 isoform 2 
AGAP3                 0.389   centaurin, gamma 3 isoform a 
AGAP1                 0.387   centaurin, gamma 2 isoform 1 
AGAP2                 0.313   centaurin, gamma 1 isoform PIKE-S 
AGAP2                 0.307   centaurin, gamma 1 isoform PIKE-L 
LOC100294038          0.223   PREDICTED: similar to centaurin, gamma-like family,...
CCNYL2                0.099   PREDICTED: cyclin Y-like 2 
CCNYL2                0.099   PREDICTED: cyclin Y-like 2 
CCNYL2                0.099   PREDICTED: cyclin Y-like 2 
ACAP3                 0.086   ArfGAP with coiled-coil, ankyrin repeat and PH doma...
ACAP2                 0.077   centaurin, beta 2 
ACAP1                 0.075   centaurin beta1 
ASAP1                 0.072   development and differentiation enhancing factor 1 [...
ASAP3                 0.063   ArfGAP with SH3 domain, ankyrin repeat and PH domai...
ASAP3                 0.063   ArfGAP with SH3 domain, ankyrin repeat and PH domain...
GIT2                  0.063   G protein-coupled receptor kinase interacting ArfGA...
GIT2                  0.063   G protein-coupled receptor kinase interacting ArfGA...
GIT2                  0.063   G protein-coupled receptor kinase interacting ArfGAP...
GIT2                  0.063   G protein-coupled receptor kinase interacting ArfGAP...
GIT2                  0.063   G protein-coupled receptor kinase interacting ArfGAP...
GIT2                  0.063   G protein-coupled receptor kinase interacting ArfGA...
GIT1                  0.061   G protein-coupled receptor kinase interactor 1 isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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