Search of human proteins with 38492358

Search of human proteins with 38492358

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|38492358 pentatricopeptide repeat domain 1 [Homo sapiens]
         (700 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|38492358 pentatricopeptide repeat domain 1 [Homo sapiens]         1407   0.0  
gi|31621305 leucine-rich PPR motif-containing protein [Homo sapi...    45   3e-04
gi|38683855 pentatricopeptide repeat domain 3 [Homo sapiens]           39   0.021
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s...    35   0.31 
gi|32967605 bromodomain adjacent to zinc finger domain, 1A isofo...    35   0.31 
gi|32967603 bromodomain adjacent to zinc finger domain, 1A isofo...    35   0.31 
gi|53831995 splicing factor 3a, subunit 1, 120kDa isoform 2 [Hom...    34   0.40 
gi|5032087 splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo...    34   0.40 
gi|47132587 protein kinase C, delta binding protein [Homo sapiens]     34   0.53 
gi|153792780 additional sex combs like 2 [Homo sapiens]                33   0.69 
gi|196115158 CDKN1A interacting zinc finger protein 1 isoform 4 ...    33   1.2  
gi|196115153 CDKN1A interacting zinc finger protein 1 isoform 3 ...    33   1.2  
gi|196115141 CDKN1A interacting zinc finger protein 1 isoform 2 ...    33   1.2  
gi|29788755 SET binding factor 2 [Homo sapiens]                        33   1.2  
gi|154759293 cysteine-rich hydrophobic domain 1 [Homo sapiens]         33   1.2  
gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1 precu...    32   1.5  
gi|23397672 homeobox D4 [Homo sapiens]                                 32   1.5  
gi|121256621 dentin matrix acidic phosphoprotein 1 isoform 2 pre...    32   1.5  
gi|213972621 ATPase type 13A2 isoform 3 [Homo sapiens]                 32   1.5  
gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]            32   2.0  
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ...    32   2.0  
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ...    32   2.0  
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]         32   2.0  
gi|9945318 MAX binding protein [Homo sapiens]                          32   2.0  
gi|210032580 SET domain containing 1B [Homo sapiens]                   32   2.0  
gi|54124343 hypothetical protein LOC387680 [Homo sapiens]              32   2.0  
gi|111955162 5-azacytidine induced 1 isoform b [Homo sapiens]          32   2.0  
gi|27734799 REST corepressor 2 [Homo sapiens]                          32   2.0  
gi|111955084 5-azacytidine induced 1 isoform a [Homo sapiens]          32   2.0  
gi|154090959 hypothetical protein LOC55747 [Homo sapiens]              32   2.0  

>gi|38492358 pentatricopeptide repeat domain 1 [Homo sapiens]
          Length = 700

 Score = 1407 bits (3641), Expect = 0.0
 Identities = 700/700 (100%), Positives = 700/700 (100%)

Query: 1   MDFVRLARLFARARPMGLFILQHLDPCRARWAGGREGLMRPMWAPFSSSSSQLPLGQERQ 60
           MDFVRLARLFARARPMGLFILQHLDPCRARWAGGREGLMRPMWAPFSSSSSQLPLGQERQ
Sbjct: 1   MDFVRLARLFARARPMGLFILQHLDPCRARWAGGREGLMRPMWAPFSSSSSQLPLGQERQ 60

Query: 61  ENTGSLGSDPSHSNSTATQEEDEEEEESFGTLSDKYSSRRLFRKSAAQFHNLRFGERRDE 120
           ENTGSLGSDPSHSNSTATQEEDEEEEESFGTLSDKYSSRRLFRKSAAQFHNLRFGERRDE
Sbjct: 61  ENTGSLGSDPSHSNSTATQEEDEEEEESFGTLSDKYSSRRLFRKSAAQFHNLRFGERRDE 120

Query: 121 QMEPEPKLWRGRRNTPYWYFLQCKHLIKEGKLVEALDLFERQMLKEERLQPMESNYTVLI 180
           QMEPEPKLWRGRRNTPYWYFLQCKHLIKEGKLVEALDLFERQMLKEERLQPMESNYTVLI
Sbjct: 121 QMEPEPKLWRGRRNTPYWYFLQCKHLIKEGKLVEALDLFERQMLKEERLQPMESNYTVLI 180

Query: 181 GGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTALFNVCAESPWKDSALQSALKLRQQLQA 240
           GGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTALFNVCAESPWKDSALQSALKLRQQLQA
Sbjct: 181 GGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTALFNVCAESPWKDSALQSALKLRQQLQA 240

Query: 241 KNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVVTEETFSFLLMGCIQDKKTGF 300
           KNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVVTEETFSFLLMGCIQDKKTGF
Sbjct: 241 KNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVVTEETFSFLLMGCIQDKKTGF 300

Query: 301 RYALQVWRLMLSLGLQPSRDSYNLLLVAARDCGLGDPQVASELLLKPREEATVLQPPVSR 360
           RYALQVWRLMLSLGLQPSRDSYNLLLVAARDCGLGDPQVASELLLKPREEATVLQPPVSR
Sbjct: 301 RYALQVWRLMLSLGLQPSRDSYNLLLVAARDCGLGDPQVASELLLKPREEATVLQPPVSR 360

Query: 361 QRPRRTAQAKAGNLMSAMLHVEALERQLFLEPSQALGPPEPPEARVPGKAQPEVDTKAEP 420
           QRPRRTAQAKAGNLMSAMLHVEALERQLFLEPSQALGPPEPPEARVPGKAQPEVDTKAEP
Sbjct: 361 QRPRRTAQAKAGNLMSAMLHVEALERQLFLEPSQALGPPEPPEARVPGKAQPEVDTKAEP 420

Query: 421 SHTAALTAVALKPPPVELEVNLLTPGAVPPTVVSFGTVTTPADRLALIGGLEGFLSKMAE 480
           SHTAALTAVALKPPPVELEVNLLTPGAVPPTVVSFGTVTTPADRLALIGGLEGFLSKMAE
Sbjct: 421 SHTAALTAVALKPPPVELEVNLLTPGAVPPTVVSFGTVTTPADRLALIGGLEGFLSKMAE 480

Query: 481 HRQQPDIRTLTLLAEVVESGSPAESLLLALLDEHQVEADLTFFNTLVRKKSKLGDLEGAK 540
           HRQQPDIRTLTLLAEVVESGSPAESLLLALLDEHQVEADLTFFNTLVRKKSKLGDLEGAK
Sbjct: 481 HRQQPDIRTLTLLAEVVESGSPAESLLLALLDEHQVEADLTFFNTLVRKKSKLGDLEGAK 540

Query: 541 ALLPVLAKRGLVPNLQTFCNLAIGCHRPKDGLQLLTDMKKSQVTPNTHIYSALINAAIRK 600
           ALLPVLAKRGLVPNLQTFCNLAIGCHRPKDGLQLLTDMKKSQVTPNTHIYSALINAAIRK
Sbjct: 541 ALLPVLAKRGLVPNLQTFCNLAIGCHRPKDGLQLLTDMKKSQVTPNTHIYSALINAAIRK 600

Query: 601 LNYTYLISILKDMKQNRVPVNEVVIRQLEFAAQYPPTFDRYQGKNTYLEKIDGFRAYYKQ 660
           LNYTYLISILKDMKQNRVPVNEVVIRQLEFAAQYPPTFDRYQGKNTYLEKIDGFRAYYKQ
Sbjct: 601 LNYTYLISILKDMKQNRVPVNEVVIRQLEFAAQYPPTFDRYQGKNTYLEKIDGFRAYYKQ 660

Query: 661 WLTVMPAEETPHPWQKFRTKPQGDQDTGKEADDGCALGGR 700
           WLTVMPAEETPHPWQKFRTKPQGDQDTGKEADDGCALGGR
Sbjct: 661 WLTVMPAEETPHPWQKFRTKPQGDQDTGKEADDGCALGGR 700


>gi|31621305 leucine-rich PPR motif-containing protein [Homo
           sapiens]
          Length = 1394

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 12/156 (7%)

Query: 508 LALLDEHQVEADLTFFNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNLQTFCNLAIGCHR 567
           LA ++E  ++ +   +  L+     +GD+EGA  +L  +  + L      F  L  G  R
Sbjct: 185 LAKMEEANIQPNRVTYQRLIASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHAR 244

Query: 568 PKD---GLQLLTDMKKSQVTPNTHIYSALINAAIRKLNYTYLISILKDMKQNRVPVNEVV 624
             D      +LT M+ + + P    Y AL+NA   K +  ++   L+ ++++ + + +  
Sbjct: 245 AGDMENAENILTVMRDAGIEPGPDTYLALLNAYAEKGDIDHVKQTLEKVEKSELHLMDRD 304

Query: 625 IRQLEFA---AQYPPTFDRYQGKNTYLEKIDGFRAY 657
           + Q+ F+   A YP      Q  +  LEK+   R Y
Sbjct: 305 LLQIIFSFSKAGYP------QYVSEILEKVTCERRY 334



 Score = 38.1 bits (87), Expect = 0.028
 Identities = 22/73 (30%), Positives = 36/73 (49%)

Query: 164 LKEERLQPMESNYTVLIGGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTALFNVCAESPW 223
           +K + L   E+ ++ L+ G  R G ++ A N+   M+   +EP   TY AL N  AE   
Sbjct: 223 MKTKDLPVTEAVFSALVTGHARAGDMENAENILTVMRDAGIEPGPDTYLALLNAYAEKGD 282

Query: 224 KDSALQSALKLRQ 236
            D   Q+  K+ +
Sbjct: 283 IDHVKQTLEKVEK 295



 Score = 36.6 bits (83), Expect = 0.081
 Identities = 84/444 (18%), Positives = 164/444 (36%), Gaps = 57/444 (12%)

Query: 192 AFNLYNQMKKRDLEPSDATYTALFNVCAESPWKDSALQSALKLRQQLQAKNFELNLKTYH 251
           A  +++ ++K       + Y AL  V  ++ +K S      K+ +     N + N  TY 
Sbjct: 146 AHRIWDTLQKLGAVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEA----NIQPNRVTYQ 201

Query: 252 ALLKMAAKCADLRMCLDVFKEIIHKGHVVTEETFSFLLMGCIQDKKTGFRYALQVWRLML 311
            L+       D+     +   +  K   VTE  FS L+ G    +      A  +  +M 
Sbjct: 202 RLIASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTG--HARAGDMENAENILTVMR 259

Query: 312 SLGLQPSRDSYNLLLVAARDCGLGDPQVASELLLKPREEATVLQPPVSRQRPRRTAQAKA 371
             G++P  D+Y  LL A  +   GD     + L K  +    L      Q     ++A  
Sbjct: 260 DAGIEPGPDTYLALLNAYAE--KGDIDHVKQTLEKVEKSELHLMDRDLLQIIFSFSKAGY 317

Query: 372 GNLMSAMLHVEALERQLFLEPSQALGPPEPPEARVPGKAQPEVDTKAEPSHTAALTAVAL 431
              +S +L     ER+              P+A                     L  V  
Sbjct: 318 PQYVSEILEKVTCERRYI------------PDAM-----------------NLILLLVTE 348

Query: 432 KPPPVELEVNLLTPGAVPPTVVSFG--------TVTTPADRLALIGGLEGFLSKMAEHRQ 483
           K   V L++ L  P +       FG        T+ TP ++L        +  K+ E + 
Sbjct: 349 KLEDVALQILLACPVSKEDGPSVFGSFFLQHCVTMNTPVEKLT------DYCKKLKEVQM 402

Query: 484 QPDIRTLTLLAEVVESGSPAESLLLALLDEHQVEADLTFFNTLVRKKSKLGDLEGAKALL 543
                  TL   ++ + +     L+  + E        +F  L+  + K  +++G   +L
Sbjct: 403 HSFPLQFTLHCALLANKTDLAKALMKAVKEEGFPIRPHYFWPLLVGRRKEKNVQGIIEIL 462

Query: 544 PVLAKRGLVPNLQTFCNLAIGCHRPKDGLQLLTDMKKSQVTPNTHIYS-ALINAAIRKLN 602
             + + G+ P+ +T+ +  I C    +  + +  ++++    ++ ++S A + +     N
Sbjct: 463 KGMQELGVHPDQETYTDYVIPCFDSVNSARAI--LQENGCLSDSDMFSQAGLRSEAANGN 520

Query: 603 YTYLISILKDMKQNRVPVNEVVIR 626
             +++S L   K N +P++   IR
Sbjct: 521 LDFVLSFL---KSNTLPISLQSIR 541



 Score = 34.7 bits (78), Expect = 0.31
 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 4/100 (4%)

Query: 164 LKEERLQPMESNYTVLIGGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTALFNVCAESPW 223
           ++E  +QP    Y  LI     VG ++ A  +   MK +DL  ++A ++AL    A +  
Sbjct: 188 MEEANIQPNRVTYQRLIASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARA-- 245

Query: 224 KDSALQSALKLRQQLQAKNFELNLKTYHALLKMAAKCADL 263
               +++A  +   ++    E    TY ALL   A+  D+
Sbjct: 246 --GDMENAENILTVMRDAGIEPGPDTYLALLNAYAEKGDI 283


>gi|38683855 pentatricopeptide repeat domain 3 [Homo sapiens]
          Length = 689

 Score = 38.5 bits (88), Expect = 0.021
 Identities = 38/156 (24%), Positives = 65/156 (41%), Gaps = 37/156 (23%)

Query: 173 ESNYTVLIGGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTALFN--VCAESPWKDSALQS 230
           E +Y  +I G  +    ++A NLY ++    L     T+ AL    VCA +   +     
Sbjct: 256 EHSYCTMIRGMVKHRAYEQALNLYTELLNNRLHADVYTFNALIEATVCAINEKFEEKWSK 315

Query: 231 ALKLRQQLQAKNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVVTEETFSFLLM 290
            L+L + + A+  + NL+T++ +LK          CL  F       HV           
Sbjct: 316 ILELLRHMVAQKVKPNLQTFNTILK----------CLRRF-------HVFARSP------ 352

Query: 291 GCIQDKKTGFRYALQVWRLMLSLGLQPSRDSYNLLL 326
                       ALQV R M ++G++PS  +Y+ ++
Sbjct: 353 ------------ALQVLREMKAIGIEPSLATYHHII 376


>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
            sapiens]
          Length = 2302

 Score = 34.7 bits (78), Expect = 0.31
 Identities = 49/207 (23%), Positives = 83/207 (40%), Gaps = 16/207 (7%)

Query: 49   SSSQLPLGQERQENTGSLGSDPSHSNSTATQEEDEEEEESFGTLSDKYSSRRLFRKSAAQ 108
            S S+L L +    ++ S  S  S S+S+  + EDE+EE+    L+D+  S+    +S   
Sbjct: 1790 SDSELDLSKLSPSSSSS--SSSSSSSSSTDESEDEKEEK----LTDQSRSKLYDEESLLS 1843

Query: 109  FHNLR--FGERRDEQMEPEPKLWRGRRNTPYWYFLQCKHLIKEGKLVEALDLFERQMLKE 166
                +  F     EQM PE  L + R+    W         K+  L+  +DL  + +L  
Sbjct: 1844 LTMSQDGFPNEDGEQMTPELLLLQERQRASEW--------PKDRVLINRIDLVCQAVLSG 1895

Query: 167  ERLQPMESNYTVLIGGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTALFNVCAESPWKDS 226
            +      S   V  G  G   +L  + +L          P+  + +A      E+    +
Sbjct: 1896 KWPSSRRSQEMVTGGILGPGNHLLDSPSLTPGEYGDSPVPTPRSSSAASMAEEEASAVST 1955

Query: 227  ALQSALKLRQQLQAKNFELNLKTYHAL 253
            A     KLR+ +  K F + +K    L
Sbjct: 1956 AAAQFTKLRRGMDEKEFTVQIKDEEGL 1982


>gi|32967605 bromodomain adjacent to zinc finger domain, 1A isoform b
            [Homo sapiens]
          Length = 1524

 Score = 34.7 bits (78), Expect = 0.31
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 363  PRRTAQAKAGNLMSAMLHVEALERQLFLEPSQALGPPEPPEAR 405
            PR T++AKAG  + A  H++A +  L + PS       PP A+
Sbjct: 1478 PRNTSEAKAGTRLQAFFHIQAQKLGLHVTPSNVDQVSTPPAAK 1520


>gi|32967603 bromodomain adjacent to zinc finger domain, 1A isoform a
            [Homo sapiens]
          Length = 1556

 Score = 34.7 bits (78), Expect = 0.31
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 363  PRRTAQAKAGNLMSAMLHVEALERQLFLEPSQALGPPEPPEAR 405
            PR T++AKAG  + A  H++A +  L + PS       PP A+
Sbjct: 1510 PRNTSEAKAGTRLQAFFHIQAQKLGLHVTPSNVDQVSTPPAAK 1552


>gi|53831995 splicing factor 3a, subunit 1, 120kDa isoform 2 [Homo
           sapiens]
          Length = 728

 Score = 34.3 bits (77), Expect = 0.40
 Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 28/139 (20%)

Query: 338 QVASELLLKPREEATVLQPPVSRQRPRRTAQAKAGNLMSAMLHVEALERQLFLEPS---- 393
           ++  E + KP E+ T      S  R ++ AQA     ++    +EA+ +   L P     
Sbjct: 422 KIGEEEIQKPEEKVTWDGHSGSMARTQQAAQAN----ITLQEQIEAIHKAKGLVPEDDTK 477

Query: 394 QALGPPEP----------------PEARVPGKAQPEVDTKAEPSHTAALTAVALKPPPVE 437
           + +GP +P                P +  P  + P   T   P  T  ++AV + P P  
Sbjct: 478 EKIGPSKPNEIPQQPPPPSSATNIPSSAPPITSVPRPPTMPPPVRTTVVSAVPVMPRPPM 537

Query: 438 LEVNLLTPGAV----PPTV 452
             V  L PG+V    PP +
Sbjct: 538 ASVVRLPPGSVIAPMPPII 556


>gi|5032087 splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo
           sapiens]
          Length = 793

 Score = 34.3 bits (77), Expect = 0.40
 Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 28/139 (20%)

Query: 338 QVASELLLKPREEATVLQPPVSRQRPRRTAQAKAGNLMSAMLHVEALERQLFLEPS---- 393
           ++  E + KP E+ T      S  R ++ AQA     ++    +EA+ +   L P     
Sbjct: 487 KIGEEEIQKPEEKVTWDGHSGSMARTQQAAQAN----ITLQEQIEAIHKAKGLVPEDDTK 542

Query: 394 QALGPPEP----------------PEARVPGKAQPEVDTKAEPSHTAALTAVALKPPPVE 437
           + +GP +P                P +  P  + P   T   P  T  ++AV + P P  
Sbjct: 543 EKIGPSKPNEIPQQPPPPSSATNIPSSAPPITSVPRPPTMPPPVRTTVVSAVPVMPRPPM 602

Query: 438 LEVNLLTPGAV----PPTV 452
             V  L PG+V    PP +
Sbjct: 603 ASVVRLPPGSVIAPMPPII 621


>gi|47132587 protein kinase C, delta binding protein [Homo sapiens]
          Length = 261

 Score = 33.9 bits (76), Expect = 0.53
 Identities = 47/173 (27%), Positives = 67/173 (38%), Gaps = 28/173 (16%)

Query: 301 RYALQVWRLMLSLGLQPSRDSYNLLLV-------------AARDCGLGDP-QVASELLLK 346
           R A QV RL  + GL  +R   ++LL              A    G  D  ++  E L  
Sbjct: 101 RRAAQVQRLEANHGLLVARGKLHVLLFKEEGEVPASAFQKAPEPLGPADQSELGPEQLEA 160

Query: 347 PREEATVLQPPVSR-QRPRRTAQAKAGNLMSAMLHVEALERQLFLEPSQALGPPEPPEAR 405
              E++  +P  SR QR RRT   K          V++L R L      A  PP P +  
Sbjct: 161 EVGESSDEEPVESRAQRLRRTGLQK----------VQSLRRALSGRKGPAAPPPTPVK-- 208

Query: 406 VPGKAQPEVDTKAEPSHTAALTAVALKPPPVELEVNLLTPGAVPPTVVSFGTV 458
            P +  P    +A+P    AL       PP + E +   PGA    ++   +V
Sbjct: 209 -PPRLGPGRSAEAQPEAQPALEPTLEPEPPQDTEEDPGRPGAAEEALLQMESV 260


>gi|153792780 additional sex combs like 2 [Homo sapiens]
          Length = 1435

 Score = 33.5 bits (75), Expect = 0.69
 Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 18/123 (14%)

Query: 356 PPVSRQRPRRTAQAKAGNLMSAMLHVEALERQLFLEPSQAL----------GPPEPPEAR 405
           PPV    P   A + A   + +  H+E L+ +  L P++A           GP    + +
Sbjct: 777 PPV----PPTPAVSGACTSVPSPAHIEKLDNEK-LNPTRATATVASVSHPQGPSSCRQEK 831

Query: 406 VPGKAQPEVDTKAEPSHTAALTAVALKPPPVELEVNLLTPGAVPPTVVSFGTVTTPADRL 465
            P    P + + A P H AA   V LK  P +   N+  P A   T  S     TP+   
Sbjct: 832 APSPTGPALISGASPVHCAADGTVELKAGPSK---NIPNPSASSKTDASVPVAVTPSPLT 888

Query: 466 ALI 468
           +L+
Sbjct: 889 SLL 891


>gi|196115158 CDKN1A interacting zinc finger protein 1 isoform 4
           [Homo sapiens]
          Length = 818

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 16/147 (10%)

Query: 340 ASELLLKPREEATVLQPPV---SRQRPR-RTAQAKAGNLMSAMLHVEALERQLFLEPSQA 395
           A E  + PR +  VLQ      S+ +PR  +   +    +      +     L L+  Q 
Sbjct: 278 ALEAQVLPRFQPRVLQVQAQVQSQTQPRIPSTDTQVQPKLQKQAQTQTSPEHLVLQQKQ- 336

Query: 396 LGPPEPPEARVPGKAQPEVDTKAEPS-----HTAALTAV-----ALKPPPVELEVNLLTP 445
           + P    EA    + QP+V T+A+PS     H  A  +V       + P  + +V+LL P
Sbjct: 337 VQPQLQQEAEPQKQVQPQVHTQAQPSVQPQEHPPAQVSVQPPEQTHEQPHTQPQVSLLAP 396

Query: 446 GAVPPTVVSFGTVTTPADRLALIGGLE 472
               P VV    +  P D +   GG+E
Sbjct: 397 EQT-PVVVHVCGLEMPPDAVEAGGGME 422


>gi|196115153 CDKN1A interacting zinc finger protein 1 isoform 3
           [Homo sapiens]
          Length = 837

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 16/147 (10%)

Query: 340 ASELLLKPREEATVLQPPV---SRQRPR-RTAQAKAGNLMSAMLHVEALERQLFLEPSQA 395
           A E  + PR +  VLQ      S+ +PR  +   +    +      +     L L+  Q 
Sbjct: 297 ALEAQVLPRFQPRVLQVQAQVQSQTQPRIPSTDTQVQPKLQKQAQTQTSPEHLVLQQKQ- 355

Query: 396 LGPPEPPEARVPGKAQPEVDTKAEPS-----HTAALTAV-----ALKPPPVELEVNLLTP 445
           + P    EA    + QP+V T+A+PS     H  A  +V       + P  + +V+LL P
Sbjct: 356 VQPQLQQEAEPQKQVQPQVHTQAQPSVQPQEHPPAQVSVQPPEQTHEQPHTQPQVSLLAP 415

Query: 446 GAVPPTVVSFGTVTTPADRLALIGGLE 472
               P VV    +  P D +   GG+E
Sbjct: 416 EQT-PVVVHVCGLEMPPDAVEAGGGME 441


>gi|196115141 CDKN1A interacting zinc finger protein 1 isoform 2
           [Homo sapiens]
          Length = 842

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 16/147 (10%)

Query: 340 ASELLLKPREEATVLQPPV---SRQRPR-RTAQAKAGNLMSAMLHVEALERQLFLEPSQA 395
           A E  + PR +  VLQ      S+ +PR  +   +    +      +     L L+  Q 
Sbjct: 302 ALEAQVLPRFQPRVLQVQAQVQSQTQPRIPSTDTQVQPKLQKQAQTQTSPEHLVLQQKQ- 360

Query: 396 LGPPEPPEARVPGKAQPEVDTKAEPS-----HTAALTAV-----ALKPPPVELEVNLLTP 445
           + P    EA    + QP+V T+A+PS     H  A  +V       + P  + +V+LL P
Sbjct: 361 VQPQLQQEAEPQKQVQPQVHTQAQPSVQPQEHPPAQVSVQPPEQTHEQPHTQPQVSLLAP 420

Query: 446 GAVPPTVVSFGTVTTPADRLALIGGLE 472
               P VV    +  P D +   GG+E
Sbjct: 421 EQT-PVVVHVCGLEMPPDAVEAGGGME 446


>gi|29788755 SET binding factor 2 [Homo sapiens]
          Length = 1849

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 48/220 (21%), Positives = 81/220 (36%), Gaps = 22/220 (10%)

Query: 368 QAKAGNLMSAMLHVEALERQLFLE----PSQALG----PPEPPEARVPGKAQPEV-DTKA 418
           + +  N +  + HV  L  QLF      P  A      P E    RV     PE+ + + 
Sbjct: 442 KVEENNPVKMIKHVRELAEQLFKNENPNPHMAFQKVPRPTEGSHLRVHILPFPEINEARV 501

Query: 419 EPSHTAALTAVALKPPPVELEVNLLTPGAVPPTVVSFGTVTTPADRLALIGGLEGFLSKM 478
           +      +      PP   +E   + P A PP V     VTT  +    +  +   +S +
Sbjct: 502 QELIQENVAKNQNAPPATRIEKKCVVP-AGPPVVSIMDKVTTVFNSAQRLEVVRNCISFI 560

Query: 479 AEHRQQPDIRTLTLLAEVVESGSPAESLL----------LALLDEHQVEADLTFFNTLVR 528
            E++     +TL      ++  +  + L            A+LD  Q +  +   N  ++
Sbjct: 561 FENKILETEKTLPAALRALKGKAARQCLTDELGLHVQQNRAILDHQQFDYIIRMMNCTLQ 620

Query: 529 KKSKLGDLEGAKALLPVLAK--RGLVPNLQTFCNLAIGCH 566
             S L +   A ALLP+ +   R L P +  F    +  H
Sbjct: 621 DCSSLEEYNIAAALLPLTSAFYRKLAPGVSQFAYTCVQDH 660


>gi|154759293 cysteine-rich hydrophobic domain 1 [Homo sapiens]
          Length = 224

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 3/94 (3%)

Query: 38  LMRPMWAPFSSSSSQLPLGQERQENTGSLGSDPSHSNSTATQEEDEEEEESFGTLSDKYS 97
           ++ P  A F + S    L +E +E   +  S PS S+S +  ++DEE+EE      ++  
Sbjct: 3   ILLPNMAEFDTISE---LEEEEEEEAATSSSSPSSSSSVSGPDDDEEDEEEEEEEEEEEE 59

Query: 98  SRRLFRKSAAQFHNLRFGERRDEQMEPEPKLWRG 131
                 +  A        E    +  P+P L RG
Sbjct: 60  EEEEEEEEEAPPPPRVVSEEHLRRYAPDPVLVRG 93


>gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1
           precursor [Homo sapiens]
          Length = 513

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 47  SSSSSQLPLGQERQENTGSLGSDPSHSNSTATQEEDEEEEESFGTLSDKYSSRRLFRKSA 106
           SS S +  + + R +N      DP+ S     ++ D  EE+S  TLS   S  R  +  +
Sbjct: 352 SSESQEEVVSESRGDNP-----DPTTSYVEDQEDSDSSEEDSSHTLSHSKSESREEQADS 406

Query: 107 AQFHNLRFGERRDEQMEPE 125
               +L F E   E  E E
Sbjct: 407 ESSESLNFSEESPESPEDE 425


>gi|23397672 homeobox D4 [Homo sapiens]
          Length = 255

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 391 EPSQALGPPEPPEARVPG-KAQPEVDTKAEPSHTAALTAVALKPPPVELEVNLLTP 445
           EP  A  PP PP A +PG +A  + D K  PS TA      + P   ++ VN + P
Sbjct: 94  EPCPA--PPAPPPAPLPGARAYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSVNP 147


>gi|121256621 dentin matrix acidic phosphoprotein 1 isoform 2
           precursor [Homo sapiens]
          Length = 497

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 47  SSSSSQLPLGQERQENTGSLGSDPSHSNSTATQEEDEEEEESFGTLSDKYSSRRLFRKSA 106
           SS S +  + + R +N      DP+ S     ++ D  EE+S  TLS   S  R  +  +
Sbjct: 336 SSESQEEVVSESRGDNP-----DPTTSYVEDQEDSDSSEEDSSHTLSHSKSESREEQADS 390

Query: 107 AQFHNLRFGERRDEQMEPE 125
               +L F E   E  E E
Sbjct: 391 ESSESLNFSEESPESPEDE 409


>gi|213972621 ATPase type 13A2 isoform 3 [Homo sapiens]
          Length = 1158

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 21/87 (24%)

Query: 399  PEPPEARVPGKAQPEVDTKAEPSHT----AALTAVALKPPPV-----------------E 437
            P PP    P  AQ  +    + + T    AAL A A +PP V                 +
Sbjct: 1039 PVPPRLPAPPPAQAGLQEALQAAGTRAGRAALAAAARRPPEVVQAHGHPRHWNSLPLSHQ 1098

Query: 438  LEVNLLTPGAVPPTVVSFGTVTTPADR 464
            L+ +  TP   PPT +   TV TP  R
Sbjct: 1099 LDPSPATPPPPPPTSLRLATVYTPPPR 1125


>gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 370

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 36/114 (31%), Positives = 45/114 (39%), Gaps = 22/114 (19%)

Query: 392 PSQALGPPEPPEARVPGKAQPE----VDTKAEPSHTAALT------------AVALKPPP 435
           P+  L PP PP AR P    P       T AE +HT ALT             V  +P  
Sbjct: 224 PAPCLPPPAPPAARTPSAHSPAHTHFTLTLAE-AHTRALTPARGGGEGDPGPIVGGRPEN 282

Query: 436 VELEVNLLTPGAVPPTVVSFGTVTTPADRLALIGGLEGFLSKMAEHRQQPDIRT 489
            +   +  +P A P  V S     +P  R    G  E  L+  A  R+QP  RT
Sbjct: 283 EDSLASQTSPPAPPAPVPSTARARSPGARR---GARE--LAPRAGRRRQPSGRT 331


>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
           sapiens]
          Length = 647

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 30/82 (36%), Positives = 32/82 (39%), Gaps = 20/82 (24%)

Query: 349 EEATVLQPPVSRQRPRRTAQAKAGNLMSAMLHVEALERQLFLEPSQA-----------LG 397
           E A V  PP  RQRPRR        L  A L  E   R     PS A            G
Sbjct: 371 EPARVWSPPPRRQRPRR--------LPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGG 422

Query: 398 PPEPPEARVPGKAQ-PEVDTKA 418
            P PP AR  G+ Q PE   +A
Sbjct: 423 APTPPHARPTGRRQDPEPGPRA 444


>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
           sapiens]
          Length = 647

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 30/82 (36%), Positives = 32/82 (39%), Gaps = 20/82 (24%)

Query: 349 EEATVLQPPVSRQRPRRTAQAKAGNLMSAMLHVEALERQLFLEPSQA-----------LG 397
           E A V  PP  RQRPRR        L  A L  E   R     PS A            G
Sbjct: 371 EPARVWSPPPRRQRPRR--------LPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGG 422

Query: 398 PPEPPEARVPGKAQ-PEVDTKA 418
            P PP AR  G+ Q PE   +A
Sbjct: 423 APTPPHARPTGRRQDPEPGPRA 444


>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
          Length = 1312

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 45  PFSSSSSQLPLGQERQENTGSLGSDPSHSNSTATQEEDEEEEE 87
           P   + S  P  +++ +     GS+PS S  T + EE+EEEEE
Sbjct: 233 PTDEAYSPPPAPEQKYDPFEPTGSNPSSSAGTPSPEEEEEEEE 275


>gi|9945318 MAX binding protein [Homo sapiens]
          Length = 582

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 36/149 (24%), Positives = 53/149 (35%), Gaps = 22/149 (14%)

Query: 360 RQRPRRTAQAKAGNLMSAMLHVEALERQLFLEPSQALGPPEPPEARVPGKAQPEVDTKAE 419
           R    R  + K  N ++ + H   +E      P   L PP PP A  P  A P       
Sbjct: 31  RLEQEREQEQKKANSLARLAHTLPVEEPRMEAPPLPLSPPAPPPAPPPPLATP------- 83

Query: 420 PSHTAALTAVALKPPPVELEVNLLTPGAVPPTVVSFGTVTTPADRLALIGGLEGF-LSKM 478
               A LT +     P+ +  N   P   PP + +       A R   + G  G  + + 
Sbjct: 84  ----APLTVI-----PIPVVTNSPQPLPPPPPLPAAAQPLPLAPRQPALVGAPGLSIKEP 134

Query: 479 AEHRQQPDIRTLTLL-----AEVVESGSP 502
           A    +P + T   L     A +  +GSP
Sbjct: 135 APLPSRPQVPTPAPLLPDSKATIPPNGSP 163


>gi|210032580 SET domain containing 1B [Homo sapiens]
          Length = 1923

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 18/55 (32%), Positives = 22/55 (40%)

Query: 396 LGPPEPPEARVPGKAQPEVDTKAEPSHTAALTAVALKPPPVELEVNLLTPGAVPP 450
           L PP PP    PG   P       P    A  AV + PPP+     +  P  +PP
Sbjct: 690 LPPPPPPPPPQPGFPMPPPLPPPPPPPPPAHPAVTVPPPPLPAPPGVPPPPILPP 744


>gi|54124343 hypothetical protein LOC387680 [Homo sapiens]
          Length = 1341

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 58  ERQENTGSLGSDPSHSNSTATQEEDEEEEESFGTLSDKYSSRRLFRKSAAQFHN-----L 112
           E     GS+GSD      T  ++E+EE +E F   SD   +R   + S  +  +      
Sbjct: 203 ELSSEEGSVGSDRGSIVDTEEEKEEEESDEDFAHHSDNEQNRHTTQMSDEEEDDDGCDLF 262

Query: 113 RFGERRDEQMEPEPKLWRGRRNTP 136
              E+ +E +E   +  R +R+ P
Sbjct: 263 ADSEKEEEDIEDIEENTRPKRSRP 286


>gi|111955162 5-azacytidine induced 1 isoform b [Homo sapiens]
          Length = 1044

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 350 EATVLQPPVSRQRPRRTAQAKAGNLMSAMLHVEALERQLFLEPSQAL----GPPEPP-EA 404
           E T+L     ++  RR A+ +     +    ++ L+++  L   +A     GPPE P E 
Sbjct: 310 EGTLLDLHQQKEAARRKAREEKAR-QARRAAIQELQQKRALRAQKASTAERGPPENPRET 368

Query: 405 RVPGKAQPEVDTKAEPSHTA 424
           RVPG  QP  +    P  TA
Sbjct: 369 RVPGMRQPAQELSPTPGGTA 388


>gi|27734799 REST corepressor 2 [Homo sapiens]
          Length = 523

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 1/83 (1%)

Query: 356 PPVSRQRPRRTAQAKAGNLMSAMLHVEALERQLFLEPSQALGPPEPPEARVPGKAQPEVD 415
           PP S  +P    +       + +     L++  FL+P  A   P PP  R P  A P   
Sbjct: 442 PPTSLSQPPPLLRPPLPTAPTLLRQPPPLQQGRFLQPRLAPNQPPPPLIR-PALAAPRHS 500

Query: 416 TKAEPSHTAALTAVALKPPPVEL 438
            +  P     L    L+PP   L
Sbjct: 501 ARPGPQPPPTLIGAPLEPPAPSL 523


>gi|111955084 5-azacytidine induced 1 isoform a [Homo sapiens]
          Length = 1080

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 350 EATVLQPPVSRQRPRRTAQAKAGNLMSAMLHVEALERQLFLEPSQAL----GPPEPP-EA 404
           E T+L     ++  RR A+ +     +    ++ L+++  L   +A     GPPE P E 
Sbjct: 310 EGTLLDLHQQKEAARRKAREEKAR-QARRAAIQELQQKRALRAQKASTAERGPPENPRET 368

Query: 405 RVPGKAQPEVDTKAEPSHTA 424
           RVPG  QP  +    P  TA
Sbjct: 369 RVPGMRQPAQELSPTPGGTA 388


>gi|154090959 hypothetical protein LOC55747 [Homo sapiens]
          Length = 1253

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 58  ERQENTGSLGSDPSHSNSTATQEEDEEEEESFGTLSDKYSSRRLFRKSAAQFHN-----L 112
           E     GS+GSD      T  ++E+EE +E F   SD   +R   + S  +  +      
Sbjct: 115 ELSSEEGSVGSDRGSIVDTEEEKEEEESDEDFAHHSDNEQNRHTTQMSDEEEDDDGCDLF 174

Query: 113 RFGERRDEQMEPEPKLWRGRRNTP 136
              E+ +E +E   +  R +R+ P
Sbjct: 175 ADSEKEEEDIEDIEENTRPKRSRP 198


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,366,717
Number of Sequences: 37866
Number of extensions: 1355891
Number of successful extensions: 7528
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 102
Number of HSP's that attempted gapping in prelim test: 7099
Number of HSP's gapped (non-prelim): 454
length of query: 700
length of database: 18,247,518
effective HSP length: 109
effective length of query: 591
effective length of database: 14,120,124
effective search space: 8344993284
effective search space used: 8344993284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.