Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ATP13A2 Sequence: fasta or formatted (1158aa) NCBI GI: 213972621
Description:

ATPase type 13A2 isoform 3

Referenced in:

Sodium, Potassium, and Calcium Membrane ATPases

Other entries for this name:
alt prot [1180aa] ATPase type 13A2 isoform 1
alt prot [1175aa] ATPase type 13A2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9        103           4
 C cysteine            2.2         26           1
 D aspartate           3.2         37           2
 E glutamate           4.4         51           3
 F phenylalanine       2.8         32           1
 G glycine             6.7         78           2
 H histidine           1.9         22           1
 I isoleucine          3.7         43           2
 K lysine              2.4         28           1
 L leucine            12.6        146           3
 M methionine          2.4         28           2
 N asparagine          1.8         21           1
 P proline             9.0        104           6
 Q glutamine           4.8         56           2
 R arginine            5.9         68           2
 S serine              7.3         85           3
 T threonine           5.9         68           3
 V valine              9.6        111           3
 W tryptophan          1.5         17           1
 Y tyrosine            2.9         34           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATPase type 13A2 isoform 3 
ATP13A2               0.877   ATPase type 13A2 isoform 2 
ATP13A2               0.874   ATPase type 13A2 isoform 1 
ATP13A3               0.333   ATPase type 13A3 
ATP13A4               0.300   ATPase type 13A4 
ATP13A5               0.299   ATPase type 13A5 
ATP13A1               0.100   ATPase type 13A1 
ATP1A1                0.045   Na+/K+ -ATPase alpha 1 subunit isoform c 
ATP1A1                0.045   Na+/K+ -ATPase alpha 1 subunit isoform d 
ATP1A1                0.045   Na+/K+ -ATPase alpha 1 subunit isoform a 
ATP1A4                0.040   Na+/K+ -ATPase alpha 4 subunit isoform 1 
ATP2A3                0.039   ATPase, Ca++ transporting, ubiquitous isoform a [Hom...
ATP2A3                0.039   ATPase, Ca++ transporting, ubiquitous isoform c [Hom...
ATP2A3                0.039   ATPase, Ca++ transporting, ubiquitous isoform f [Hom...
ATP2A3                0.039   ATPase, Ca++ transporting, ubiquitous isoform c [Hom...
ATP2A3                0.039   ATPase, Ca++ transporting, ubiquitous isoform b [Hom...
ATP2A3                0.039   ATPase, Ca++ transporting, ubiquitous isoform d [Hom...
ATP2A3                0.039   ATPase, Ca++ transporting, ubiquitous isoform e [Hom...
ATP2C2                0.039   ATPase, Ca++ transporting, type 2C, member 2 
ATP2A1                0.039   ATPase, Ca++ transporting, fast twitch 1 isoform b [...
ATP2A1                0.039   ATPase, Ca++ transporting, fast twitch 1 isoform a [...
ATP2C1                0.037   calcium-transporting ATPase 2C1 isoform 1b 
ATP2C1                0.037   calcium-transporting ATPase 2C1 isoform 1d 
ATP2C1                0.037   calcium-transporting ATPase 2C1 isoform 1c 
ATP2C1                0.037   calcium-transporting ATPase 2C1 isoform 1a 
ATP12A                0.037   hydrogen/potassium-exchanging ATPase 12A 
ATP2B2                0.034   plasma membrane calcium ATPase 2 isoform 1 
ATP2B2                0.034   plasma membrane calcium ATPase 2 isoform 2 
ATP2B3                0.033   plasma membrane calcium ATPase 3 isoform 3b 
ATP2B3                0.033   plasma membrane calcium ATPase 3 isoform 3a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press