Guide to the Human Genome
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Name: CIZ1 Sequence: fasta or formatted (818aa) NCBI GI: 196115158
Description:

CDKN1A interacting zinc finger protein 1 isoform 4

Referenced in:

Zinc Finger Proteins

Other entries for this name:
alt prot [842aa] CDKN1A interacting zinc finger protein 1 isoform 2
alt prot [898aa] CDKN1A interacting zinc finger protein 1 isoform 1
alt prot [837aa] CDKN1A interacting zinc finger protein 1 isoform 3
alt prot [898aa] CDKN1A interacting zinc finger protein 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         50           2
 C cysteine            2.3         19           1
 D aspartate           3.5         29           2
 E glutamate           7.9         65           5
 F phenylalanine       2.2         18           2
 G glycine             4.3         35           3
 H histidine           2.2         18           1
 I isoleucine          1.8         15           1
 K lysine              4.5         37           1
 L leucine             8.8         72           3
 M methionine          2.0         16           1
 N asparagine          2.4         20           1
 P proline            11.2         92           3
 Q glutamine          14.4        118           6
 R arginine            5.0         41           2
 S serine              8.1         66           3
 T threonine           5.9         48           2
 V valine              5.6         46           3
 W tryptophan          0.4          3           1
 Y tyrosine            1.2         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CDKN1A interacting zinc finger protein 1 isoform 4 ... 
CIZ1                  0.991   CDKN1A interacting zinc finger protein 1 isoform 2 ...
CIZ1                  0.982   CDKN1A interacting zinc finger protein 1 isoform 3 ...
CIZ1                  0.973   CDKN1A interacting zinc finger protein 1 isoform 1 ...
CIZ1                  0.973   CDKN1A interacting zinc finger protein 1 isoform 1 [...
MED15                 0.035   mediator complex subunit 15 isoform a 
MED15                 0.034   mediator complex subunit 15 isoform b 
MLL2                  0.033   myeloid/lymphoid or mixed-lineage leukemia 2 
EP400                 0.033   E1A binding protein p400 
NCOA6                 0.031   nuclear receptor coactivator 6 
BPTF                  0.029   bromodomain PHD finger transcription factor isoform ...
YLPM1                 0.027   YLP motif containing 1 
ZFHX3                 0.026   AT-binding transcription factor 1 
CREBBP                0.026   CREB binding protein isoform b 
CREBBP                0.026   CREB binding protein isoform a 
FOXP2                 0.025   forkhead box P2 isoform I 
FOXP2                 0.025   forkhead box P2 isoform III 
FOXP2                 0.025   forkhead box P2 isoform II 
BPTF                  0.025   bromodomain PHD finger transcription factor isoform ...
FSCB                  0.024   fibrous sheath CABYR binding protein 
ZNF853                0.024   zinc finger protein 853 
TCERG1                0.024   transcription elongation regulator 1 isoform 2 [Homo...
TCERG1                0.024   transcription elongation regulator 1 isoform 1 [Homo...
TTN                   0.024   titin isoform N2-A 
FLJ22184              0.023   PREDICTED: hypothetical protein FLJ22184 
RBM20                 0.023   RNA binding motif protein 20 
RP1L1                 0.023   retinitis pigmentosa 1-like 1 
ZYX                   0.023   zyxin 
ZYX                   0.023   zyxin 
NACA                  0.023   nascent polypeptide-associated complex alpha subuni...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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