Guide to the Human Genome
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Name: GABPB1 Sequence: fasta or formatted (360aa) NCBI GI: 8051597
Description:

GA binding protein transcription factor, beta subunit 1 isoform gamma 1

Referenced in:

Ets Family

Other entries for this name:
alt prot [348aa] GA binding protein transcription factor, beta subunit 1 isoform g...
alt prot [395aa] GA binding protein transcription factor, beta subunit 1 isoform b...
alt prot [383aa] GA binding protein transcription factor, beta subunit 1 isoform b...
alt prot [348aa] GA binding protein transcription factor, beta subunit 1 isoform g...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         37           2
 C cysteine            0.8          3           1
 D aspartate           5.0         18           2
 E glutamate           7.5         27           2
 F phenylalanine       1.4          5           1
 G glycine             6.9         25           2
 H histidine           3.3         12           1
 I isoleucine          6.9         25           2
 K lysine              3.3         12           2
 L leucine             8.6         31           2
 M methionine          1.9          7           1
 N asparagine          3.9         14           1
 P proline             4.7         17           2
 Q glutamine           5.0         18           2
 R arginine            2.8         10           1
 S serine              8.3         30           2
 T threonine           8.3         30           2
 V valine              9.4         34           2
 W tryptophan          0.6          2           1
 Y tyrosine            0.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GA binding protein transcription factor, beta subunit... 
GABPB1                0.958   GA binding protein transcription factor, beta subunit...
GABPB1                0.955   GA binding protein transcription factor, beta subuni...
GABPB1                0.955   GA binding protein transcription factor, beta subunit...
GABPB1                0.914   GA binding protein transcription factor, beta subunit...
GABPB2                0.616   GA repeat binding protein, beta 2 
TNKS2                 0.107   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
TNKS                  0.105   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
ANK1                  0.099   ankyrin 1 isoform 9 
ANK1                  0.099   ankyrin 1 isoform 1 
ANK1                  0.099   ankyrin 1 isoform 3 
ANK1                  0.099   ankyrin 1 isoform 2 
ANK1                  0.099   ankyrin 1 isoform 4 
ANKRD6                0.099   ankyrin repeat domain 6 
ANK2                  0.098   ankyrin 2 isoform 3 
ANK2                  0.098   ankyrin 2 isoform 2 
ANK2                  0.098   ankyrin 2 isoform 1 
LOC441869             0.088   hypothetical protein LOC441869 
ANK3                  0.088   ankyrin 3 isoform 1 
ANKRD27               0.088   ankyrin repeat domain 27 (VPS9 domain) 
RIPK4                 0.086   ankyrin repeat domain 3 
TANC1                 0.085   tetratricopeptide repeat, ankyrin repeat and coiled...
TANC1                 0.085   tetratricopeptide repeat, ankyrin repeat and coiled...
DAPK1                 0.085   death-associated protein kinase 1 
ANKRD2                0.085   ankyrin repeat domain 2 isoform a 
ASB3                  0.085   ankyrin repeat and SOCS box-containing protein 3 iso...
ANKRD23               0.085   diabetes related ankyrin repeat protein 
ASB3                  0.085   ankyrin repeat and SOCS box-containing protein 3 isof...
ANKRD2                0.080   ankyrin repeat domain 2 isoform b 
UACA                  0.080   uveal autoantigen with coiled-coil domains and ankyr...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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