Guide to the Human Genome
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Name: GABPB1 Sequence: fasta or formatted (348aa) NCBI GI: 32483404
Description:

GA binding protein transcription factor, beta subunit 1 isoform gamma 2

Referenced in:

Ets Family

Other entries for this name:
alt prot [395aa] GA binding protein transcription factor, beta subunit 1 isoform b...
alt prot [383aa] GA binding protein transcription factor, beta subunit 1 isoform b...
alt prot [360aa] GA binding protein transcription factor, beta subunit 1 isoform g...
alt mRNA [348aa] GA binding protein transcription factor, beta subunit 1 isoform g...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         36           2
 C cysteine            0.9          3           1
 D aspartate           5.2         18           2
 E glutamate           7.5         26           2
 F phenylalanine       1.4          5           1
 G glycine             6.9         24           2
 H histidine           3.4         12           1
 I isoleucine          7.2         25           2
 K lysine              3.2         11           2
 L leucine             8.6         30           2
 M methionine          2.0          7           1
 N asparagine          3.7         13           1
 P proline             4.9         17           2
 Q glutamine           5.2         18           2
 R arginine            2.9         10           1
 S serine              7.5         26           2
 T threonine           8.3         29           2
 V valine              9.5         33           2
 W tryptophan          0.6          2           1
 Y tyrosine            0.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GA binding protein transcription factor, beta subuni... 
GABPB1                1.000   GA binding protein transcription factor, beta subunit...
GABPB1                0.986   GA binding protein transcription factor, beta subunit...
GABPB1                0.957   GA binding protein transcription factor, beta subunit...
GABPB1                0.943   GA binding protein transcription factor, beta subunit...
GABPB2                0.609   GA repeat binding protein, beta 2 
TNKS2                 0.110   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
TNKS                  0.109   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
ANK1                  0.103   ankyrin 1 isoform 9 
ANK1                  0.103   ankyrin 1 isoform 1 
ANK1                  0.103   ankyrin 1 isoform 3 
ANK1                  0.103   ankyrin 1 isoform 2 
ANK1                  0.103   ankyrin 1 isoform 4 
ANKRD6                0.103   ankyrin repeat domain 6 
ANK2                  0.101   ankyrin 2 isoform 3 
ANK2                  0.101   ankyrin 2 isoform 2 
ANK2                  0.101   ankyrin 2 isoform 1 
ANK3                  0.093   ankyrin 3 isoform 1 
LOC441869             0.090   hypothetical protein LOC441869 
RIPK4                 0.090   ankyrin repeat domain 3 
ANKRD27               0.090   ankyrin repeat domain 27 (VPS9 domain) 
TANC1                 0.090   tetratricopeptide repeat, ankyrin repeat and coiled...
TANC1                 0.090   tetratricopeptide repeat, ankyrin repeat and coiled...
ANKRD28               0.090   ankyrin repeat domain 28 
DAPK1                 0.087   death-associated protein kinase 1 
ANKRD2                0.087   ankyrin repeat domain 2 isoform a 
ANKRD23               0.087   diabetes related ankyrin repeat protein 
ASB3                  0.086   ankyrin repeat and SOCS box-containing protein 3 iso...
ASB3                  0.086   ankyrin repeat and SOCS box-containing protein 3 isof...
ANKRD50               0.084   ankyrin repeat domain 50 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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