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Search of human proteins with 38348394
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38348394 RNA binding motif protein 43 [Homo sapiens]
(357 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38348394 RNA binding motif protein 43 [Homo sapiens] 695 0.0
gi|21389509 KPL2 protein isoform 2 [Homo sapiens] 37 0.035
gi|145699133 KPL2 protein isoform 1 [Homo sapiens] 37 0.035
gi|42415492 chromosome 14 open reading frame 106 [Homo sapiens] 36 0.061
gi|17975763 myelin transcription factor 1 [Homo sapiens] 33 0.39
gi|188219599 N-myc and STAT interactor [Homo sapiens] 32 0.67
gi|221219026 pleckstrin homology-like domain, family B, member 1... 31 1.5
gi|221219024 pleckstrin homology-like domain, family B, member 1... 31 1.5
gi|38424073 pleckstrin homology-like domain, family B, member 1 ... 31 1.5
gi|19924131 RAD50 homolog isoform 2 [Homo sapiens] 31 1.9
gi|19924129 RAD50 homolog isoform 1 [Homo sapiens] 31 1.9
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 31 1.9
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ... 31 1.9
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 31 1.9
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 31 1.9
gi|55956788 nucleolin [Homo sapiens] 30 2.5
gi|62912476 lethal giant larvae homolog 1 [Homo sapiens] 30 2.5
gi|20357578 apobec-1 complementation factor isoform 3 [Homo sapi... 30 3.3
gi|20357575 apobec-1 complementation factor isoform 2 [Homo sapi... 30 3.3
gi|20357572 apobec-1 complementation factor isoform 1 [Homo sapi... 30 3.3
gi|45383011 potassium voltage-gated channel, delayed-rectifier, ... 30 3.3
gi|112382372 guanylate binding protein 3 [Homo sapiens] 30 4.3
gi|118572606 hemicentin 1 [Homo sapiens] 29 5.7
gi|157419126 laminin, alpha 4 isoform 2 precursor [Homo sapiens] 29 5.7
gi|157419124 laminin, alpha 4 isoform 1 precursor [Homo sapiens] 29 5.7
gi|157419122 laminin, alpha 4 isoform 2 precursor [Homo sapiens] 29 5.7
gi|239735569 grainyhead-like 1 [Homo sapiens] 29 7.4
gi|112420968 coiled-coil domain containing 158 [Homo sapiens] 29 7.4
gi|122937201 similar to zinc finger protein 709 [Homo sapiens] 29 7.4
gi|4557311 adenosine monophosphate deaminase 1 (isoform M) [Homo... 28 9.7
>gi|38348394 RNA binding motif protein 43 [Homo sapiens]
Length = 357
Score = 695 bits (1793), Expect = 0.0
Identities = 357/357 (100%), Positives = 357/357 (100%)
Query: 1 MASVLNVKESKAPERTVVVAGLPVDLFSDQLLAVLVKSHFQDIKNEGGDVEDVIYPTRTK 60
MASVLNVKESKAPERTVVVAGLPVDLFSDQLLAVLVKSHFQDIKNEGGDVEDVIYPTRTK
Sbjct: 1 MASVLNVKESKAPERTVVVAGLPVDLFSDQLLAVLVKSHFQDIKNEGGDVEDVIYPTRTK 60
Query: 61 GVAYVIFKEKKVAENVIRQKKHWLARKTRHAELTVSLRVSHFGDKIFSSVNAILDLSVFG 120
GVAYVIFKEKKVAENVIRQKKHWLARKTRHAELTVSLRVSHFGDKIFSSVNAILDLSVFG
Sbjct: 61 GVAYVIFKEKKVAENVIRQKKHWLARKTRHAELTVSLRVSHFGDKIFSSVNAILDLSVFG 120
Query: 121 KEVTLETLVKDLKKKIPSLSFSPLKPNGRISVEGSFLAVKRLRESLLARACSLLEKDRNF 180
KEVTLETLVKDLKKKIPSLSFSPLKPNGRISVEGSFLAVKRLRESLLARACSLLEKDRNF
Sbjct: 121 KEVTLETLVKDLKKKIPSLSFSPLKPNGRISVEGSFLAVKRLRESLLARACSLLEKDRNF 180
Query: 181 TSEERKWNRQNPQRNLQRSNNSLASVRTLVPETARSGEMLVLDTDVFLYLKHKCGSYEST 240
TSEERKWNRQNPQRNLQRSNNSLASVRTLVPETARSGEMLVLDTDVFLYLKHKCGSYEST
Sbjct: 181 TSEERKWNRQNPQRNLQRSNNSLASVRTLVPETARSGEMLVLDTDVFLYLKHKCGSYEST 240
Query: 241 LKKFHILSQEKVDGEITTICLKSIQVGSQPNNAKHVKELIEEWSHALYLKLRKETFILEG 300
LKKFHILSQEKVDGEITTICLKSIQVGSQPNNAKHVKELIEEWSHALYLKLRKETFILEG
Sbjct: 241 LKKFHILSQEKVDGEITTICLKSIQVGSQPNNAKHVKELIEEWSHALYLKLRKETFILEG 300
Query: 301 KENREKRMIKRACEQLSSRYLEVLINLYRTHIDIIGSSSDTYLFKKGVMKLIGQKVS 357
KENREKRMIKRACEQLSSRYLEVLINLYRTHIDIIGSSSDTYLFKKGVMKLIGQKVS
Sbjct: 301 KENREKRMIKRACEQLSSRYLEVLINLYRTHIDIIGSSSDTYLFKKGVMKLIGQKVS 357
>gi|21389509 KPL2 protein isoform 2 [Homo sapiens]
Length = 514
Score = 36.6 bits (83), Expect = 0.035
Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 17/165 (10%)
Query: 160 KRLRESLLARACSLLEKDRNFTSEERKWNRQNPQRNLQRSNNSLASVRTL---VPETARS 216
K ++E L LE+ + E+R ++ + N +R N +A ++ +P+ A +
Sbjct: 164 KHVKEDLAHLHFEKLERFQKLKEEQRCFDIEKQYLNRRRQNEIMAKIQAAIIQIPKPASN 223
Query: 217 GEMLVLDTDVFLYLKHKCGSYESTLKKFHILSQEKVDGEITTICLKSIQVGSQPNNAKHV 276
+ L+ + K + +KKF L ++ + + +S S +
Sbjct: 224 RTLKALEAQKMMKKKKEAEDVADEIKKFEALIKKDLQAK------ESASKTSLDTAGQTT 277
Query: 277 KELIEEWSHALYLK-----LRKETFILEGKENREKRMIKRACEQL 316
+L+ +S Y+K L ++ F +E REKR K +QL
Sbjct: 278 TDLLNTYSDDEYIKKIQKRLEEDAF---AREQREKRRRKLLMDQL 319
>gi|145699133 KPL2 protein isoform 1 [Homo sapiens]
Length = 1822
Score = 36.6 bits (83), Expect = 0.035
Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 17/165 (10%)
Query: 160 KRLRESLLARACSLLEKDRNFTSEERKWNRQNPQRNLQRSNNSLASVRTL---VPETARS 216
K ++E L LE+ + E+R ++ + N +R N +A ++ +P+ A +
Sbjct: 164 KHVKEDLAHLHFEKLERFQKLKEEQRCFDIEKQYLNRRRQNEIMAKIQAAIIQIPKPASN 223
Query: 217 GEMLVLDTDVFLYLKHKCGSYESTLKKFHILSQEKVDGEITTICLKSIQVGSQPNNAKHV 276
+ L+ + K + +KKF L ++ + + +S S +
Sbjct: 224 RTLKALEAQKMMKKKKEAEDVADEIKKFEALIKKDLQAK------ESASKTSLDTAGQTT 277
Query: 277 KELIEEWSHALYLK-----LRKETFILEGKENREKRMIKRACEQL 316
+L+ +S Y+K L ++ F +E REKR K +QL
Sbjct: 278 TDLLNTYSDDEYIKKIQKRLEEDAF---AREQREKRRRKLLMDQL 319
>gi|42415492 chromosome 14 open reading frame 106 [Homo sapiens]
Length = 1132
Score = 35.8 bits (81), Expect = 0.061
Identities = 49/240 (20%), Positives = 95/240 (39%), Gaps = 32/240 (13%)
Query: 111 NAILDLSVFG-KEVTLETLVKDLKKKIPSLSFSPLKPN-----GRISVEGSFLAVKRLRE 164
N L ++ F K + T++ + SL S +KPN + + E R++E
Sbjct: 61 NQFLKMTTFNNKNIFQSTMLTEATTSNSSLDISAIKPNKDGLKNKANYESPGKIFLRMKE 120
Query: 165 SLL-------ARACSLLEKDRNFTSEERKWNRQNPQR-------NLQRSNNSLASVRTLV 210
+L +R SLLE ++ +E NR ++ + +N S S + +
Sbjct: 121 KVLRDKQEQPSRNSSLLEPQKSGNNETFTPNRVEKKKLQHTYLCEEKENNKSFQSDDSSL 180
Query: 211 PETARSGEMLVLDTDVFLYLKHKCGSYESTLKKFH-------ILSQEKVDGEITTICLKS 263
+ + + + D+FL +K K + H L+QE+ + K+
Sbjct: 181 RASVQGVPLESSNNDIFLPVKQKIQCQQEKKAPLHNLTYELPTLNQEQENFLAVEARNKT 240
Query: 264 IQVGSQPNNAKHVKELIEEWSHALYLKLRKETFILEGKENREKRMIKRACEQLSSRYLEV 323
+ H KE I + K +K+TF+LE ++ +++ E LS+ + +
Sbjct: 241 LTRAQLAKQIFHSKESIVATT-----KSKKDTFVLESVDSADEQFQNTNAETLSTNCIPI 295
>gi|17975763 myelin transcription factor 1 [Homo sapiens]
Length = 1121
Score = 33.1 bits (74), Expect = 0.39
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 14/143 (9%)
Query: 199 SNNSLASVRTL--VPETARSGEMLVLDTDVFLYLKHKCGSYESTLKKFHILSQEKVD--- 253
+N S + R+L P +G+ L D L K K ++ L+QE D
Sbjct: 957 ANGSFLTHRSLSGCPRATFAGKKGKLSGDEVLSPKFKTSDVLENDEEIKQLNQEIRDLNE 1016
Query: 254 ----GEITTICLKSIQVGSQPNNAKHVKE---LIEEWSHALYLKLR-KETFILEGKENRE 305
E + L+S Q+ S N K+++E LIEE + AL+L+L +++ N
Sbjct: 1017 SNSEMEAAMVQLQS-QISSMEKNLKNIEEENKLIEEQNEALFLELSGLSQALIQSLANIR 1075
Query: 306 KRMIKRACEQLSSRYLEVLINLY 328
++ CEQ Y+ L ++Y
Sbjct: 1076 LPHMEPICEQNFDAYVSTLTDMY 1098
>gi|188219599 N-myc and STAT interactor [Homo sapiens]
Length = 307
Score = 32.3 bits (72), Expect = 0.67
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 10 SKAPERTVVVAGLPVDLFSDQLLAVLVKSHFQDIKNEGGDVEDVIYPTRTKGVAY 64
S +RTV++ G+ ++++ L+ HFQ KN GG+V+ V +AY
Sbjct: 250 SGTSKRTVLLTGMEGIQMDEEIVEDLINIHFQRAKNGGGEVDVVKCSLGQPHIAY 304
Score = 30.8 bits (68), Expect = 1.9
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 60 KGVAYVIFKEKKVAENVIRQKKHWLARKTRHAELTVSLRVSHFGDKIFSSVNAILDLSVF 119
KG A + F++++VA+NV+ KH + K + E+T + G + F + + +
Sbjct: 102 KGQALITFEKEEVAQNVVSMSKHHVQIKDVNLEVTAKPVPLNSGVR-FQVYVEVSKMKIN 160
Query: 120 GKEVTLETLVKDLKKKIPSLSFSPLKPNG 148
E+ +TL +D + LSFS + G
Sbjct: 161 VTEIP-DTLREDQMRDKLELSFSKSRNGG 188
>gi|221219026 pleckstrin homology-like domain, family B, member 1
isoform b [Homo sapiens]
Length = 1319
Score = 31.2 bits (69), Expect = 1.5
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 230 LKHKCGSYESTLKKFHILSQEKVDGEITTICLKSIQVGSQPNNAK-HVKELIEEWSHALY 288
LK +C S EST ++ K+ GE+ + + QV K VKEL ++ +
Sbjct: 687 LKEECSSTESTQQEHEDAPSTKLQGEVLALEEERAQVLGHVEQLKVRVKELEQQLQESA- 745
Query: 289 LKLRKETFILEGKENREKRMI---KRACEQLSSR 319
+ E +L+G+ E+ ++ ++A +QL +
Sbjct: 746 REAEMERALLQGEREAERALLQKEQKAVDQLQEK 779
>gi|221219024 pleckstrin homology-like domain, family B, member 1
isoform a [Homo sapiens]
Length = 1377
Score = 31.2 bits (69), Expect = 1.5
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 230 LKHKCGSYESTLKKFHILSQEKVDGEITTICLKSIQVGSQPNNAK-HVKELIEEWSHALY 288
LK +C S EST ++ K+ GE+ + + QV K VKEL ++ +
Sbjct: 687 LKEECSSTESTQQEHEDAPSTKLQGEVLALEEERAQVLGHVEQLKVRVKELEQQLQESA- 745
Query: 289 LKLRKETFILEGKENREKRMI---KRACEQLSSR 319
+ E +L+G+ E+ ++ ++A +QL +
Sbjct: 746 REAEMERALLQGEREAERALLQKEQKAVDQLQEK 779
>gi|38424073 pleckstrin homology-like domain, family B, member 1
isoform a [Homo sapiens]
Length = 1377
Score = 31.2 bits (69), Expect = 1.5
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 230 LKHKCGSYESTLKKFHILSQEKVDGEITTICLKSIQVGSQPNNAK-HVKELIEEWSHALY 288
LK +C S EST ++ K+ GE+ + + QV K VKEL ++ +
Sbjct: 687 LKEECSSTESTQQEHEDAPSTKLQGEVLALEEERAQVLGHVEQLKVRVKELEQQLQESA- 745
Query: 289 LKLRKETFILEGKENREKRMI---KRACEQLSSR 319
+ E +L+G+ E+ ++ ++A +QL +
Sbjct: 746 REAEMERALLQGEREAERALLQKEQKAVDQLQEK 779
>gi|19924131 RAD50 homolog isoform 2 [Homo sapiens]
Length = 1173
Score = 30.8 bits (68), Expect = 1.9
Identities = 39/177 (22%), Positives = 73/177 (41%), Gaps = 29/177 (16%)
Query: 159 VKRLRESLLARACSLLEKDRNFTSEERKWNRQNPQRNLQRSNNSLASVRTLVPETARSGE 218
VK + L + +LE D+ ER+ ++ N++ + S++ + R+
Sbjct: 321 VKYELQQLEGSSDRILELDQELIKAERELSKAEKNSNVETLKMEVISLQNEKADLDRT-- 378
Query: 219 MLVLDTDVFLYLKHKCGSYESTLKKFHILSQEKVDGEITTICLKSIQ-------VGSQPN 271
+ LD ++ + + +T + +L+++K D + +KS +G PN
Sbjct: 379 LRKLDQEM-----EQLNHHTTTRTQMEMLTKDKADKDEQIRKIKSRHSDELTSLLGYFPN 433
Query: 272 NAKHVKELIEEWSHAL----------YLKLRKETFILEGKENREKRMIKRACEQLSS 318
K+ +E+W H+ KL KE E +N +KR EQLSS
Sbjct: 434 -----KKQLEDWLHSKSKEINQTRDRLAKLNKELASSEQNKNHINNELKRKEEQLSS 485
>gi|19924129 RAD50 homolog isoform 1 [Homo sapiens]
Length = 1312
Score = 30.8 bits (68), Expect = 1.9
Identities = 39/177 (22%), Positives = 73/177 (41%), Gaps = 29/177 (16%)
Query: 159 VKRLRESLLARACSLLEKDRNFTSEERKWNRQNPQRNLQRSNNSLASVRTLVPETARSGE 218
VK + L + +LE D+ ER+ ++ N++ + S++ + R+
Sbjct: 460 VKYELQQLEGSSDRILELDQELIKAERELSKAEKNSNVETLKMEVISLQNEKADLDRT-- 517
Query: 219 MLVLDTDVFLYLKHKCGSYESTLKKFHILSQEKVDGEITTICLKSIQ-------VGSQPN 271
+ LD ++ + + +T + +L+++K D + +KS +G PN
Sbjct: 518 LRKLDQEM-----EQLNHHTTTRTQMEMLTKDKADKDEQIRKIKSRHSDELTSLLGYFPN 572
Query: 272 NAKHVKELIEEWSHAL----------YLKLRKETFILEGKENREKRMIKRACEQLSS 318
K+ +E+W H+ KL KE E +N +KR EQLSS
Sbjct: 573 -----KKQLEDWLHSKSKEINQTRDRLAKLNKELASSEQNKNHINNELKRKEEQLSS 624
>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
Length = 355
Score = 30.8 bits (68), Expect = 1.9
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 37 KSHFQDIKNEGGDVEDVIYPT-----RTKGVAYVIFKEKKVAENVIRQKKHWLARKTRHA 91
K +D ++ G+V D R++G +V+FKE + + V+ QK+H L K
Sbjct: 110 KKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDP 169
Query: 92 ELTVSLRVSHFGDKIF 107
+ +++ KIF
Sbjct: 170 KRAKAMKTKEPVKKIF 185
>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
[Homo sapiens]
Length = 306
Score = 30.8 bits (68), Expect = 1.9
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 37 KSHFQDIKNEGGDVEDVIYPT-----RTKGVAYVIFKEKKVAENVIRQKKHWLARKTRHA 91
K +D ++ G+V D R++G +V+FKE + + V+ QK+H L K
Sbjct: 110 KKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDP 169
Query: 92 ELTVSLRVSHFGDKIF 107
+ +++ KIF
Sbjct: 170 KRAKAMKTKEPVKKIF 185
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 30.8 bits (68), Expect = 1.9
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 37 KSHFQDIKNEGGDVEDVIYPT-----RTKGVAYVIFKEKKVAENVIRQKKHWLARKTRHA 91
K +D ++ G+V D R++G +V+FKE + + V+ QK+H L K
Sbjct: 91 KKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDP 150
Query: 92 ELTVSLRVSHFGDKIF 107
+ +++ KIF
Sbjct: 151 KRAKAMKTKEPVKKIF 166
>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
Length = 287
Score = 30.8 bits (68), Expect = 1.9
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 37 KSHFQDIKNEGGDVEDVIYPT-----RTKGVAYVIFKEKKVAENVIRQKKHWLARKTRHA 91
K +D ++ G+V D R++G +V+FKE + + V+ QK+H L K
Sbjct: 91 KKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDP 150
Query: 92 ELTVSLRVSHFGDKIF 107
+ +++ KIF
Sbjct: 151 KRAKAMKTKEPVKKIF 166
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 30.4 bits (67), Expect = 2.5
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 8 KESKAPE--RTVVVAGLPVDLFSDQLLAVLVKSHFQDIKNEGGDVEDVIYPTRTKGVAYV 65
K+SK RT++ LP + D+L +++ + ++ V ++KG+AY+
Sbjct: 384 KDSKKERDARTLLAKNLPYKVTQDEL---------KEVFEDAAEIRLVSKDGKSKGIAYI 434
Query: 66 IFKEKKVAENVIRQKK 81
FK + AE +K+
Sbjct: 435 EFKTEADAEKTFEEKQ 450
>gi|62912476 lethal giant larvae homolog 1 [Homo sapiens]
Length = 1064
Score = 30.4 bits (67), Expect = 2.5
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 131 DLKKKIPSLSFSPLKPNGRISVEGSFLAVKRLRESLLARACSLLEKDRNFTSEERKWNRQ 190
D ++K P L+ L PN +++EG VK L++S L ++ + K R K
Sbjct: 625 DYQRKSPVLARCTLHPNDSLAMEGPLSRVKSLKKS-LRQSFRRIRKSR----VSGKKRAA 679
Query: 191 NPQRNLQRSNNSLA 204
N LQ +N LA
Sbjct: 680 NASSKLQEANAQLA 693
>gi|20357578 apobec-1 complementation factor isoform 3 [Homo
sapiens]
Length = 594
Score = 30.0 bits (66), Expect = 3.3
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 15/87 (17%)
Query: 9 ESKAPER--TVVVAGLPVDLFSDQLLAVLVKSHFQDIKNEGGDVEDVI----YPTRTKGV 62
++ PER + + LP DLF D+L+ + K G + ++ + +G
Sbjct: 56 DAAPPERGCEIFIGKLPRDLFEDELIPLCEKI---------GKIYEMRMMMDFNGNNRGY 106
Query: 63 AYVIFKEKKVAENVIRQKKHWLARKTR 89
A+V F K A+N I+Q ++ R R
Sbjct: 107 AFVTFSNKVEAKNAIKQLNNYEIRNGR 133
>gi|20357575 apobec-1 complementation factor isoform 2 [Homo
sapiens]
Length = 594
Score = 30.0 bits (66), Expect = 3.3
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 15/87 (17%)
Query: 9 ESKAPER--TVVVAGLPVDLFSDQLLAVLVKSHFQDIKNEGGDVEDVI----YPTRTKGV 62
++ PER + + LP DLF D+L+ + K G + ++ + +G
Sbjct: 48 DAAPPERGCEIFIGKLPRDLFEDELIPLCEKI---------GKIYEMRMMMDFNGNNRGY 98
Query: 63 AYVIFKEKKVAENVIRQKKHWLARKTR 89
A+V F K A+N I+Q ++ R R
Sbjct: 99 AFVTFSNKVEAKNAIKQLNNYEIRNGR 125
>gi|20357572 apobec-1 complementation factor isoform 1 [Homo
sapiens]
Length = 586
Score = 30.0 bits (66), Expect = 3.3
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 15/87 (17%)
Query: 9 ESKAPER--TVVVAGLPVDLFSDQLLAVLVKSHFQDIKNEGGDVEDVI----YPTRTKGV 62
++ PER + + LP DLF D+L+ + K G + ++ + +G
Sbjct: 48 DAAPPERGCEIFIGKLPRDLFEDELIPLCEKI---------GKIYEMRMMMDFNGNNRGY 98
Query: 63 AYVIFKEKKVAENVIRQKKHWLARKTR 89
A+V F K A+N I+Q ++ R R
Sbjct: 99 AFVTFSNKVEAKNAIKQLNNYEIRNGR 125
>gi|45383011 potassium voltage-gated channel, delayed-rectifier,
subfamily S, member 2 [Homo sapiens]
Length = 477
Score = 30.0 bits (66), Expect = 3.3
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 3/103 (2%)
Query: 162 LRESLLARACSLLEKDRNFTSEERKWNRQNPQRNLQRSNNSLASVRTLVPETARSGEMLV 221
+ E + CS R E+ KW+ Q+ Q + + +S + + ++ +
Sbjct: 110 INEFFIDSCCSYSYHGRKVEPEQEKWDEQSDQ---ESTTSSFDEILAFYNDASKFDGQPL 166
Query: 222 LDTDVFLYLKHKCGSYESTLKKFHILSQEKVDGEITTICLKSI 264
+ L+L Y + F ILS V G I T+CL S+
Sbjct: 167 GNFRRQLWLALDNPGYSVLSRVFSILSILVVMGSIITMCLNSL 209
>gi|112382372 guanylate binding protein 3 [Homo sapiens]
Length = 595
Score = 29.6 bits (65), Expect = 4.3
Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 17/119 (14%)
Query: 229 YLKHKCGSYESTLKKFHILSQEKVDGEITTICLKSIQVGS-----------------QPN 271
YLK K ++ L+ IL++++ + E+ + +S Q + + +
Sbjct: 462 YLKSKESVTDAILQTDQILTEKEKEIEVECVKAESAQASAKMVEEMQIKYQQMMEEKEKS 521
Query: 272 NAKHVKELIEEWSHALYLKLRKETFILEGKENREKRMIKRACEQLSSRYLEVLINLYRT 330
+HVK+L E+ L ++ L K + R++K C+ S++ + L +T
Sbjct: 522 YQEHVKQLTEKMERERAQLLEEQEKTLTSKLQEQARVLKERCQGESTQLQNEIQKLQKT 580
>gi|118572606 hemicentin 1 [Homo sapiens]
Length = 5635
Score = 29.3 bits (64), Expect = 5.7
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 89 RHAELTVSLRVSHFGDKIFSSVNAILDLSVF-GKEVTLETLVKDLKKKIPSLS-----FS 142
R +LTV +R FGD+ S + +++SV G+EVTL VK L I + + S
Sbjct: 1062 RKVQLTVYVRPRVFGDQRGLSQDKPVEISVLAGEEVTLPCEVKSLPPPIITWAKETQLIS 1121
Query: 143 PLKPNGRISVEGS 155
P P GS
Sbjct: 1122 PFSPRHTFLPSGS 1134
>gi|157419126 laminin, alpha 4 isoform 2 precursor [Homo sapiens]
Length = 1816
Score = 29.3 bits (64), Expect = 5.7
Identities = 35/176 (19%), Positives = 71/176 (40%), Gaps = 23/176 (13%)
Query: 39 HFQDIKNEGGDVEDVIYPTRTKGVAYVIFKEKKVAENVIRQKKHWLARKTRHAELTVSLR 98
H QD++ E ++ ++ + G+ V EN++ ++++ AE ++
Sbjct: 586 HAQDLQQEANELSRKLHSSDMNGLVQKALDASNVYENIV----NYVSEANETAEFALNTT 641
Query: 99 VSHFGDKIFSSVNAILDLSVFGKEVTLETL--VKDLKKKIPSLSFSPLKPNGRISVEGSF 156
D+I+ +V+ I ++ K+ + L ++L+ K S S + R V G+
Sbjct: 642 -----DRIYDAVSGIDTQIIYHKDESENLLNQARELQAKAESSSDEAVADTSR-RVGGAL 695
Query: 157 L-----------AVKRLRESLLARACSLLEKDRNFTSEERKWNRQNPQRNLQRSNN 201
AVK+L+ + A L + R T E + + Q +NN
Sbjct: 696 ARKSALKTRLSDAVKQLQAAERGDAQQRLGQSRLITEEANRTTMEVQQATAPMANN 751
>gi|157419124 laminin, alpha 4 isoform 1 precursor [Homo sapiens]
Length = 1823
Score = 29.3 bits (64), Expect = 5.7
Identities = 35/176 (19%), Positives = 71/176 (40%), Gaps = 23/176 (13%)
Query: 39 HFQDIKNEGGDVEDVIYPTRTKGVAYVIFKEKKVAENVIRQKKHWLARKTRHAELTVSLR 98
H QD++ E ++ ++ + G+ V EN++ ++++ AE ++
Sbjct: 593 HAQDLQQEANELSRKLHSSDMNGLVQKALDASNVYENIV----NYVSEANETAEFALNTT 648
Query: 99 VSHFGDKIFSSVNAILDLSVFGKEVTLETL--VKDLKKKIPSLSFSPLKPNGRISVEGSF 156
D+I+ +V+ I ++ K+ + L ++L+ K S S + R V G+
Sbjct: 649 -----DRIYDAVSGIDTQIIYHKDESENLLNQARELQAKAESSSDEAVADTSR-RVGGAL 702
Query: 157 L-----------AVKRLRESLLARACSLLEKDRNFTSEERKWNRQNPQRNLQRSNN 201
AVK+L+ + A L + R T E + + Q +NN
Sbjct: 703 ARKSALKTRLSDAVKQLQAAERGDAQQRLGQSRLITEEANRTTMEVQQATAPMANN 758
>gi|157419122 laminin, alpha 4 isoform 2 precursor [Homo sapiens]
Length = 1816
Score = 29.3 bits (64), Expect = 5.7
Identities = 35/176 (19%), Positives = 71/176 (40%), Gaps = 23/176 (13%)
Query: 39 HFQDIKNEGGDVEDVIYPTRTKGVAYVIFKEKKVAENVIRQKKHWLARKTRHAELTVSLR 98
H QD++ E ++ ++ + G+ V EN++ ++++ AE ++
Sbjct: 586 HAQDLQQEANELSRKLHSSDMNGLVQKALDASNVYENIV----NYVSEANETAEFALNTT 641
Query: 99 VSHFGDKIFSSVNAILDLSVFGKEVTLETL--VKDLKKKIPSLSFSPLKPNGRISVEGSF 156
D+I+ +V+ I ++ K+ + L ++L+ K S S + R V G+
Sbjct: 642 -----DRIYDAVSGIDTQIIYHKDESENLLNQARELQAKAESSSDEAVADTSR-RVGGAL 695
Query: 157 L-----------AVKRLRESLLARACSLLEKDRNFTSEERKWNRQNPQRNLQRSNN 201
AVK+L+ + A L + R T E + + Q +NN
Sbjct: 696 ARKSALKTRLSDAVKQLQAAERGDAQQRLGQSRLITEEANRTTMEVQQATAPMANN 751
>gi|239735569 grainyhead-like 1 [Homo sapiens]
Length = 618
Score = 28.9 bits (63), Expect = 7.4
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 29 DQLLAVLVKSHFQDIK-NEGGDVEDVIYP-TRTKGVAYVIFKEKKVAENVIRQKKHWLAR 86
D + L K F I E E + +P ++ + V V+F E K E+ +R K+W +R
Sbjct: 268 DSTMTYLNKGQFYPITLKEVSSSEGIHHPISKVRSVIMVVFAEDKSREDQLRHWKYWHSR 327
Query: 87 K 87
+
Sbjct: 328 Q 328
>gi|112420968 coiled-coil domain containing 158 [Homo sapiens]
Length = 1113
Score = 28.9 bits (63), Expect = 7.4
Identities = 45/189 (23%), Positives = 75/189 (39%), Gaps = 16/189 (8%)
Query: 125 LETLVKDLKKKIPSLSFSPLKPNGRI--SVEGSFLAVKRLRESLLARACSL--LEKDRNF 180
L+ L+ DL K+ LS + N R+ G+ + + LR L R + LE
Sbjct: 379 LQKLLADLHKREKELSLEK-EQNKRLWDRDTGNSITIDHLRRELDNRNMEVQRLEALLKA 437
Query: 181 TSEERKWNRQNPQRNLQRSNNSLASVRTLVPETARSGEMLVLDTDVFLYLKHKCGSYEST 240
E + + +Q N SL V +L + + EML + K S E T
Sbjct: 438 LKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERT 497
Query: 241 LKKFHILSQEK------VDGEIT----TICLKSIQVGSQPNNAKHVKELIEEWSHALYLK 290
+ QEK + EIT + LK ++ N H++ + E AL L+
Sbjct: 498 ISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTE-CEALKLQ 556
Query: 291 LRKETFILE 299
+ ++ ++E
Sbjct: 557 MTEKDKVIE 565
>gi|122937201 similar to zinc finger protein 709 [Homo sapiens]
Length = 578
Score = 28.9 bits (63), Expect = 7.4
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 178 RNFTSEERKWN-------RQNPQRNLQRSNNSLASVRTLVPETARSGEMLVLDTDVFLYL 230
RN TS +KWN QNP+RNL+R S E+ + GE+L D L
Sbjct: 85 RNLTSIGKKWNNQYIEDEHQNPRRNLRRLIGERLSES---KESHQHGEVLTQVPDDTLKK 141
Query: 231 KHK-CGSYESTL 241
K SYES++
Sbjct: 142 KTPGVQSYESSV 153
>gi|4557311 adenosine monophosphate deaminase 1 (isoform M) [Homo
sapiens]
Length = 747
Score = 28.5 bits (62), Expect = 9.7
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 42 DIKNEGG-------DVEDVIYPTRTKGVAYVIFKEKKVAENVIRQKKHWLARKTRHAEL- 93
++K+EGG DV+++ + + A++ E R+KK + RKT + +
Sbjct: 28 EVKDEGGRQEISPFDVDEICPISHHEMQAHIFHLETLSTSTEARRKKRFQGRKTVNLSIP 87
Query: 94 ---TVSLRVSHFGDKIFSS 109
T S ++SH + I SS
Sbjct: 88 LSETSSTKLSHIDEYISSS 106
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,045,890
Number of Sequences: 37866
Number of extensions: 496213
Number of successful extensions: 1463
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1440
Number of HSP's gapped (non-prelim): 40
length of query: 357
length of database: 18,247,518
effective HSP length: 103
effective length of query: 254
effective length of database: 14,347,320
effective search space: 3644219280
effective search space used: 3644219280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.