Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RAD50 Sequence: fasta or formatted (1312aa) NCBI GI: 19924129
Description:

RAD50 homolog isoform 1

Referenced in:

DNases, Recombination, and DNA Repair

Other entries for this name:
alt prot [1173aa] RAD50 homolog isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8         50           2
 C cysteine            1.4         18           2
 D aspartate           6.1         80           2
 E glutamate          12.1        159           3
 F phenylalanine       2.3         30           2
 G glycine             3.0         40           1
 H histidine           2.1         27           2
 I isoleucine          6.8         89           2
 K lysine             11.3        148           3
 L leucine            10.6        139           2
 M methionine          2.5         33           2
 N asparagine          5.0         65           2
 P proline             1.3         17           2
 Q glutamine           7.9        103           2
 R arginine            6.3         83           2
 S serine              6.2         81           2
 T threonine           4.9         64           3
 V valine              4.3         57           2
 W tryptophan          0.3          4           1
 Y tyrosine            1.9         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAD50 homolog isoform 1 
RAD50                 0.892   RAD50 homolog isoform 2 
MYH11                 0.049   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.049   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
GCC2                  0.048   GRIP and coiled-coil domain-containing 2 
GOLGA4                0.048   golgi autoantigen, golgin subfamily a, 4 
EEA1                  0.047   early endosome antigen 1, 162kD 
MYH8                  0.047   myosin, heavy chain 8, skeletal muscle, perinatal [...
GOLGB1                0.047   golgi autoantigen, golgin subfamily b, macrogolgin ...
MYH11                 0.047   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.047   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
TRIP11                0.045   thyroid hormone receptor interactor 11 
MYH3                  0.044   myosin, heavy chain 3, skeletal muscle, embryonic [H...
MYH13                 0.044   myosin, heavy polypeptide 13, skeletal muscle [Homo...
CENPE                 0.044   centromere protein E 
MYH2                  0.043   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.043   myosin, heavy chain 2, skeletal muscle, adult [Homo...
CEP250                0.043   centrosomal protein 2 
MYH1                  0.043   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH4                  0.043   myosin, heavy polypeptide 4, skeletal muscle 
MYH7                  0.043   myosin, heavy chain 7, cardiac muscle, beta 
MYH9                  0.042   myosin, heavy polypeptide 9, non-muscle 
DSP                   0.042   desmoplakin isoform I 
CEP110                0.042   centrosomal protein 110kDa 
TPR                   0.042   nuclear pore complex-associated protein TPR 
AKAP9                 0.041   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.041   A-kinase anchor protein 9 isoform 3 
MYO18A                0.041   myosin 18A isoform a 
MYH6                  0.041   myosin heavy chain 6 
KTN1                  0.040   kinectin 1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press