Guide to the Human Genome
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Name: GRHL1 Sequence: fasta or formatted (618aa) NCBI GI: 239735569
Description:

grainyhead-like 1

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         33           3
 C cysteine            0.8          5           1
 D aspartate           6.3         39           2
 E glutamate           7.6         47           2
 F phenylalanine       4.2         26           2
 G glycine             4.5         28           2
 H histidine           2.9         18           2
 I isoleucine          5.8         36           1
 K lysine              7.6         47           2
 L leucine             7.0         43           2
 M methionine          1.9         12           2
 N asparagine          4.7         29           2
 P proline             6.3         39           2
 Q glutamine           3.9         24           1
 R arginine            5.2         32           2
 S serine              8.3         51           3
 T threonine           6.0         37           2
 V valine              7.4         46           3
 W tryptophan          0.6          4           1
 Y tyrosine            3.6         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   grainyhead-like 1 
GRHL2                 0.529   transcription factor CP2-like 3 
GRHL3                 0.378   sister-of-mammalian grainyhead protein isoform 2 [Ho...
GRHL3                 0.378   sister-of-mammalian grainyhead protein isoform 1 [Ho...
GRHL3                 0.319   sister-of-mammalian grainyhead protein isoform 3 [Ho...
TFCP2L1               0.067   LBP-9 
UBP1                  0.066   upstream binding protein 1 (LBP-1a) isoform b [Homo...
UBP1                  0.062   upstream binding protein 1 (LBP-1a) isoform a [Homo...
UBP1                  0.062   upstream binding protein 1 (LBP-1a) isoform a [Homo...
TFCP2                 0.062   transcription factor CP2 
DGKK                  0.007   diacylglycerol kinase kappa 
GLI3                  0.007   GLI-Kruppel family member GLI3 
CENPE                 0.005   centromere protein E 
DBT                   0.004   dihydrolipoamide branched chain transacylase precur...
AGPAT6                0.004   lysophosphatidic acid acyltransferase zeta precursor...
DGKQ                  0.004   diacylglycerol kinase, theta 
PRX                   0.004   periaxin isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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