Guide to the Human Genome
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Name: LOC729747 Sequence: fasta or formatted (578aa) NCBI GI: 122937201
Description:

similar to zinc finger protein 709

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         25           1
 C cysteine            5.2         30           1
 D aspartate           1.6          9           2
 E glutamate           8.5         49           2
 F phenylalanine       4.8         28           2
 G glycine             6.9         40           1
 H histidine           6.4         37           1
 I isoleucine          3.1         18           1
 K lysine             11.2         65           3
 L leucine             5.2         30           2
 M methionine          0.9          5           1
 N asparagine          2.2         13           2
 P proline             3.6         21           1
 Q glutamine           4.2         24           1
 R arginine            7.6         44           2
 S serine              9.5         55           3
 T threonine           5.9         34           2
 V valine              4.2         24           1
 W tryptophan          0.3          2           1
 Y tyrosine            4.3         25           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   similar to zinc finger protein 709 
ZNF709                0.573   zinc finger protein 709 isoform a 
ZNF433                0.561   zinc finger protein 433 
ZNF791                0.551   zinc finger protein 791 
ZNF14                 0.551   zinc finger protein 14 
ZNF700                0.549   zinc finger protein 700 
ZNF709                0.528   zinc finger protein 709 isoform b 
ZNF20                 0.526   zinc finger protein 20 
ZNF136                0.507   zinc finger protein 136 
ZNF564                0.490   zinc finger protein 564 
ZNF443                0.488   zinc finger protein 443 
ZNF44                 0.485   zinc finger protein 44 
ZNF441                0.484   zinc finger protein 441 
LOC100292533          0.483   PREDICTED: similar to zinc finger protein 564 [Homo...
LOC100290363          0.482   PREDICTED: hypothetical protein XP_002347962 
LOC100287841          0.482   PREDICTED: hypothetical protein XP_002343682 
ZNF442                0.481   zinc finger protein 442 
ZNF823                0.475   ZFP-36 for a zinc finger protein 
ZNF490                0.473   zinc finger protein 490 
ZNF799                0.468   zinc finger protein 799 
ZNF555                0.459   zinc finger protein 555 
ZNF627                0.457   zinc finger protein 627 
ZNF439                0.452   zinc finger protein 439 
ZNF440                0.448   zinc finger protein 440 
ZNF699                0.442   zinc finger protein 699 
ZNF420                0.436   zinc finger protein 420 
ZNF283                0.427   zinc finger protein 283 
ZNF571                0.421   zinc finger protein 571 
ZNF491                0.418   zinc finger protein 491 
ZNF30                 0.412   zinc finger protein 30 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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