A1CF 12053

Name: A1CF	Sequence: fasta or formatted (594aa)		NCBI GI: 20357578
Description: apobec-1 complementation factor isoform 3		Referenced in: RNA Editing and Other RNA Modifications
Other entries for this name: alt prot [586aa] apobec-1 complementation factor isoform 1 alt prot [594aa] apobec-1 complementation factor isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 10.3 61 5 C cysteine 1.2 7 1 D aspartate 4.2 25 1 E glutamate 6.6 39 2 F phenylalanine 3.2 19 1 G glycine 9.3 55 2 H histidine 1.2 7 1 I isoleucine 5.4 32 2 K lysine 6.4 38 2 L leucine 8.1 48 2 M methionine 2.7 16 3 N asparagine 4.0 24 2 P proline 6.6 39 3 Q glutamine 3.7 22 1 R arginine 5.1 30 2 S serine 3.9 23 2 T threonine 6.4 38 3 V valine 6.4 38 2 W tryptophan 0.7 4 1 Y tyrosine 4.9 29 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 apobec-1 complementation factor isoform 3 A1CF 0.934 apobec-1 complementation factor isoform 1 A1CF 0.928 apobec-1 complementation factor isoform 2 RBM47 0.399 RNA binding motif protein 47 isoform a RBM47 0.367 RNA binding motif protein 47 isoform b RBM46 0.352 RNA binding motif protein 46 HNRNPR 0.251 heterogeneous nuclear ribonucleoprotein R isoform 4... HNRNPR 0.251 heterogeneous nuclear ribonucleoprotein R isoform 2 [... SYNCRIP 0.250 synaptotagmin binding, cytoplasmic RNA interacting ... SYNCRIP 0.250 synaptotagmin binding, cytoplasmic RNA interacting ... SYNCRIP 0.250 synaptotagmin binding, cytoplasmic RNA interacting ... SYNCRIP 0.250 synaptotagmin binding, cytoplasmic RNA interacting ... HNRNPR 0.246 heterogeneous nuclear ribonucleoprotein R isoform 3... HNRNPR 0.246 heterogeneous nuclear ribonucleoprotein R isoform 1... SYNCRIP 0.207 synaptotagmin binding, cytoplasmic RNA interacting ... SYNCRIP 0.207 synaptotagmin binding, cytoplasmic RNA interacting ... DND1 0.121 dead end homolog 1 PABPC4L 0.052 poly(A) binding protein, cytoplasmic 4-like PABPC4 0.041 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... PABPC4 0.041 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... PABPC4 0.041 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... PABPC3 0.038 poly(A) binding protein, cytoplasmic 3 PABPC1 0.038 poly(A) binding protein, cytoplasmic 1 PABPC5 0.036 poly(A) binding protein, cytoplasmic 5 NCL 0.033 nucleolin BRUNOL5 0.033 bruno-like 5, RNA binding protein isoform 1 BRUNOL4 0.030 bruno-like 4, RNA binding protein isoform 4 RAVER2 0.030 ribonucleoprotein, PTB-binding 2 TIA1 0.028 TIA1 protein isoform 1 TIA1 0.028 TIA1 protein isoform 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.