Guide to the Human Genome
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Name: AMPD1 Sequence: fasta or formatted (747aa) NCBI GI: 4557311
Description:

adenosine monophosphate deaminase 1 (isoform M)

Referenced in:

Purine Biosynthesis and Catabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         44           3
 C cysteine            1.6         12           1
 D aspartate           5.9         44           2
 E glutamate           7.1         53           2
 F phenylalanine       6.0         45           2
 G glycine             3.9         29           2
 H histidine           3.3         25           2
 I isoleucine          5.0         37           2
 K lysine              7.5         56           2
 L leucine             9.1         68           2
 M methionine          3.5         26           1
 N asparagine          5.0         37           2
 P proline             5.6         42           2
 Q glutamine           3.6         27           1
 R arginine            4.6         34           2
 S serine              6.7         50           3
 T threonine           5.0         37           1
 V valine              5.2         39           2
 W tryptophan          0.8          6           1
 Y tyrosine            4.8         36           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   adenosine monophosphate deaminase 1 (isoform M) [Homo... 
AMPD3                 0.600   adenosine monophosphate deaminase 3 isoform 1A 
AMPD3                 0.600   adenosine monophosphate deaminase 3 isoform 1C [Homo...
AMPD3                 0.600   adenosine monophosphate deaminase 3 isoform 1B [Homo...
AMPD2                 0.466   adenosine monophosphate deaminase 2 (isoform L) isof...
AMPD2                 0.466   adenosine monophosphate deaminase 2 (isoform L) isof...
AMPD2                 0.466   adenosine monophosphate deaminase 2 (isoform L) isof...
CECR1                 0.009   cat eye syndrome critical region protein 1 isoform b...
CECR1                 0.009   cat eye syndrome critical region protein 1 isoform a...
CENPE                 0.005   centromere protein E 
DYNC1H1               0.004   cytoplasmic dynein 1 heavy chain 1 
SLC38A6               0.003   solute carrier family 38, member 6 
HSD17B4               0.003   hydroxysteroid (17-beta) dehydrogenase 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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