Guide to the Human Genome
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Name: CCDC158 Sequence: fasta or formatted (1113aa) NCBI GI: 112420968
Description:

coiled-coil domain containing 158

Referenced in:

Coiled-Coil Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         57           2
 C cysteine            0.8          9           1
 D aspartate           4.7         52           2
 E glutamate          12.0        134           2
 F phenylalanine       1.6         18           2
 G glycine             3.1         35           2
 H histidine           2.2         24           2
 I isoleucine          4.3         48           2
 K lysine              8.6         96           2
 L leucine            11.7        130           3
 M methionine          3.1         35           2
 N asparagine          4.3         48           2
 P proline             1.8         20           2
 Q glutamine           7.5         84           2
 R arginine            6.8         76           3
 S serine             11.4        127           4
 T threonine           5.6         62           2
 V valine              4.2         47           2
 W tryptophan          0.2          2           1
 Y tyrosine            0.8          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 158 
MYH10                 0.060   myosin, heavy polypeptide 10, non-muscle 
MYH3                  0.056   myosin, heavy chain 3, skeletal muscle, embryonic [H...
MYH7                  0.055   myosin, heavy chain 7, cardiac muscle, beta 
EEA1                  0.055   early endosome antigen 1, 162kD 
MYH11                 0.055   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.055   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.055   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.055   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH9                  0.054   myosin, heavy polypeptide 9, non-muscle 
MYH2                  0.053   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.053   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH1                  0.053   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH4                  0.053   myosin, heavy polypeptide 4, skeletal muscle 
CEP250                0.053   centrosomal protein 2 
CCDC88A               0.052   coiled-coil domain containing 88A isoform 1 
MYH6                  0.052   myosin heavy chain 6 
ERC2                  0.052   cytomatrix protein p110 
CCDC88A               0.052   coiled-coil domain containing 88A isoform 2 
MYH13                 0.051   myosin, heavy polypeptide 13, skeletal muscle [Homo...
CENPE                 0.051   centromere protein E 
CLIP1                 0.050   restin isoform a 
MYH14                 0.050   myosin, heavy chain 14 isoform 1 
MYH14                 0.050   myosin, heavy chain 14 isoform 2 
MYH14                 0.050   myosin, heavy chain 14 isoform 3 
GOLGA4                0.050   golgi autoantigen, golgin subfamily a, 4 
MYH8                  0.050   myosin, heavy chain 8, skeletal muscle, perinatal [...
CLIP1                 0.050   restin isoform b 
CGN                   0.049   cingulin 
GCC2                  0.049   GRIP and coiled-coil domain-containing 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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