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Search of human proteins with 38327552
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38327552 Ras-GTPase-activating protein SH3-domain-binding
protein [Homo sapiens]
(466 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5031703 Ras-GTPase-activating protein SH3-domain-binding prot... 953 0.0
gi|38327552 Ras-GTPase-activating protein SH3-domain-binding pro... 953 0.0
gi|19923399 Ras-GTPase activating protein SH3 domain-binding pro... 578 e-165
gi|45359849 Ras-GTPase activating protein SH3 domain-binding pro... 578 e-165
gi|45359846 Ras-GTPase activating protein SH3 domain-binding pro... 514 e-146
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 67 3e-11
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 67 3e-11
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 67 5e-11
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 67 5e-11
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 61 2e-09
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 61 2e-09
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 60 3e-09
gi|110349719 titin isoform N2-A [Homo sapiens] 58 2e-08
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc... 56 6e-08
gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl... 56 6e-08
gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl... 56 6e-08
gi|4506903 splicing factor, arginine/serine-rich 9 [Homo sapiens] 55 1e-07
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 55 2e-07
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ... 54 3e-07
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ... 54 3e-07
gi|14327896 cyclin B1 [Homo sapiens] 54 4e-07
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 54 4e-07
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 54 4e-07
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 52 1e-06
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ... 52 1e-06
gi|118582269 splicing factor, arginine/serine-rich 1 isoform 2 [... 52 1e-06
gi|5902076 splicing factor, arginine/serine-rich 1 isoform 1 [Ho... 52 1e-06
gi|4502847 cold inducible RNA binding protein [Homo sapiens] 50 3e-06
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 50 6e-06
gi|93277122 RNA binding motif protein 4 [Homo sapiens] 49 7e-06
>gi|5031703 Ras-GTPase-activating protein SH3-domain-binding protein
[Homo sapiens]
Length = 466
Score = 953 bits (2463), Expect = 0.0
Identities = 466/466 (100%), Positives = 466/466 (100%)
Query: 1 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 60
MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 60
Query: 61 IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 120
IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV
Sbjct: 61 IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 120
Query: 121 ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQAVVS 180
ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQAVVS
Sbjct: 121 ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQAVVS 180
Query: 181 NDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADIAQ 240
NDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADIAQ
Sbjct: 181 NDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADIAQ 240
Query: 241 TVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQRD 300
TVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQRD
Sbjct: 241 TVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQRD 300
Query: 301 QRVREQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKDFF 360
QRVREQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKDFF
Sbjct: 301 QRVREQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKDFF 360
Query: 361 QSYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKTRAARE 420
QSYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKTRAARE
Sbjct: 361 QSYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKTRAARE 420
Query: 421 GDRRDNRLRGPGGPRGGLGGGMRGPPRGGMVQKPGFGVGRGLAPRQ 466
GDRRDNRLRGPGGPRGGLGGGMRGPPRGGMVQKPGFGVGRGLAPRQ
Sbjct: 421 GDRRDNRLRGPGGPRGGLGGGMRGPPRGGMVQKPGFGVGRGLAPRQ 466
>gi|38327552 Ras-GTPase-activating protein SH3-domain-binding
protein [Homo sapiens]
Length = 466
Score = 953 bits (2463), Expect = 0.0
Identities = 466/466 (100%), Positives = 466/466 (100%)
Query: 1 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 60
MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 60
Query: 61 IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 120
IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV
Sbjct: 61 IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 120
Query: 121 ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQAVVS 180
ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQAVVS
Sbjct: 121 ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQAVVS 180
Query: 181 NDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADIAQ 240
NDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADIAQ
Sbjct: 181 NDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADIAQ 240
Query: 241 TVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQRD 300
TVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQRD
Sbjct: 241 TVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQRD 300
Query: 301 QRVREQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKDFF 360
QRVREQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKDFF
Sbjct: 301 QRVREQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKDFF 360
Query: 361 QSYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKTRAARE 420
QSYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKTRAARE
Sbjct: 361 QSYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKTRAARE 420
Query: 421 GDRRDNRLRGPGGPRGGLGGGMRGPPRGGMVQKPGFGVGRGLAPRQ 466
GDRRDNRLRGPGGPRGGLGGGMRGPPRGGMVQKPGFGVGRGLAPRQ
Sbjct: 421 GDRRDNRLRGPGGPRGGLGGGMRGPPRGGMVQKPGFGVGRGLAPRQ 466
>gi|19923399 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform a [Homo sapiens]
Length = 482
Score = 578 bits (1490), Expect = e-165
Identities = 315/482 (65%), Positives = 366/482 (75%), Gaps = 32/482 (6%)
Query: 1 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 60
MVMEKPSPLLVGREFVRQYYTLLN+AP+ LHRFYG+NSSYVHGG+D++GKP +AVYGQ +
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
Query: 61 IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 120
IH KV+S NF+ CHTKIRHVDAHATL+DGVVVQVMGLLSN+ Q R+FMQTFVLAPEGSV
Sbjct: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
Query: 121 ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEV-EEPEERQQTPEVVPDDSGT-FYDQAV 178
NKFYVHND+FRY+DEVFG E EESE+EV EE EERQ +PE V +++ + +Y+
Sbjct: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP 180
Query: 179 VSNDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADI 238
V+N +EE LEE EPEP+PE E + E + EEK LEE KS++P PA+
Sbjct: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEE-------KSTTPPPAEP 233
Query: 239 AQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQ 298
QE + FSWASVTSKNLPPSG V +GIPPH VK P SQPR E+KPE Q P R
Sbjct: 234 VSLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPH-VKAPVSQPRVEAKPEVQSQPPR-V 291
Query: 299 RDQRVREQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKD 358
R+QR RE R PP RGPRP R EQ D + RR++R+PDSHQLF+GNLPH++D++ELK+
Sbjct: 292 REQRPRE-RPGFPP-RGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKE 349
Query: 359 FFQSYGNVVELRINS---GGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKT 415
FF S+GNVVELRIN+ GGKLPNFGFVVFDDSEPVQ++L +PIMFRGEVRLNVEEKKT
Sbjct: 350 FFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKT 409
Query: 416 RAARE-------GDRRDNRL--RGPGGPRGGLGGGM------RG-PPRGGMVQKPGFGVG 459
RAARE DRRD R RGPGGPRG +GGGM RG PPRGGM QK G G G
Sbjct: 410 RAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRG 469
Query: 460 RG 461
G
Sbjct: 470 TG 471
>gi|45359849 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform a [Homo sapiens]
Length = 482
Score = 578 bits (1490), Expect = e-165
Identities = 315/482 (65%), Positives = 366/482 (75%), Gaps = 32/482 (6%)
Query: 1 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 60
MVMEKPSPLLVGREFVRQYYTLLN+AP+ LHRFYG+NSSYVHGG+D++GKP +AVYGQ +
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
Query: 61 IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 120
IH KV+S NF+ CHTKIRHVDAHATL+DGVVVQVMGLLSN+ Q R+FMQTFVLAPEGSV
Sbjct: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
Query: 121 ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEV-EEPEERQQTPEVVPDDSGT-FYDQAV 178
NKFYVHND+FRY+DEVFG E EESE+EV EE EERQ +PE V +++ + +Y+
Sbjct: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP 180
Query: 179 VSNDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADI 238
V+N +EE LEE EPEP+PE E + E + EEK LEE KS++P PA+
Sbjct: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEE-------KSTTPPPAEP 233
Query: 239 AQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQ 298
QE + FSWASVTSKNLPPSG V +GIPPH VK P SQPR E+KPE Q P R
Sbjct: 234 VSLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPH-VKAPVSQPRVEAKPEVQSQPPR-V 291
Query: 299 RDQRVREQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKD 358
R+QR RE R PP RGPRP R EQ D + RR++R+PDSHQLF+GNLPH++D++ELK+
Sbjct: 292 REQRPRE-RPGFPP-RGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKE 349
Query: 359 FFQSYGNVVELRINS---GGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKT 415
FF S+GNVVELRIN+ GGKLPNFGFVVFDDSEPVQ++L +PIMFRGEVRLNVEEKKT
Sbjct: 350 FFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKT 409
Query: 416 RAARE-------GDRRDNRL--RGPGGPRGGLGGGM------RG-PPRGGMVQKPGFGVG 459
RAARE DRRD R RGPGGPRG +GGGM RG PPRGGM QK G G G
Sbjct: 410 RAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRG 469
Query: 460 RG 461
G
Sbjct: 470 TG 471
>gi|45359846 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform b [Homo sapiens]
Length = 449
Score = 514 bits (1323), Expect = e-146
Identities = 291/482 (60%), Positives = 341/482 (70%), Gaps = 65/482 (13%)
Query: 1 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 60
MVMEKPSPLLVGREFVRQYYTLLN+AP+ LHRFYG+NSSYVHGG+D++GKP +AVYGQ +
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
Query: 61 IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 120
IH KV+S NF+ CHTKIRHVDAHATL+DGVVVQVMGLLSN+ Q R+FMQTFVLAPEGSV
Sbjct: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
Query: 121 ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEV-EEPEERQQTPEVVPDDSGT-FYDQAV 178
NKFYVHND+FRY+DEVFG E EESE+EV EE EERQ +PE V +++ + +Y+
Sbjct: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP 180
Query: 179 VSNDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADI 238
V+N +EE LEE EPEP+PE E + E + EEK LEE KS++P PA+
Sbjct: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEE-------KSTTPPPAEP 233
Query: 239 AQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQ 298
QE PP +PR E+KPE Q P R
Sbjct: 234 VSLPQE---------------PP-------------------KPRVEAKPEVQSQPPR-V 258
Query: 299 RDQRVREQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKD 358
R+QR RE R PP RGPRP R EQ D + RR++R+PDSHQLF+GNLPH++D++ELK+
Sbjct: 259 REQRPRE-RPGFPP-RGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKE 316
Query: 359 FFQSYGNVVELRINS---GGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKT 415
FF S+GNVVELRIN+ GGKLPNFGFVVFDDSEPVQ++L +PIMFRGEVRLNVEEKKT
Sbjct: 317 FFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKT 376
Query: 416 RAARE-------GDRRDNRL--RGPGGPRGGLGGGM------RG-PPRGGMVQKPGFGVG 459
RAARE DRRD R RGPGGPRG +GGGM RG PPRGGM QK G G G
Sbjct: 377 RAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRG 436
Query: 460 RG 461
G
Sbjct: 437 TG 438
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 67.4 bits (163), Expect = 3e-11
Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 21/152 (13%)
Query: 328 IEPRRMVRHPDS---------HQLFIGNLPHEVDKSELKDFFQSYGNVVELRI---NSGG 375
+EP+R V +S +LF+G + + ++ L+D+F+ YG + + I G
Sbjct: 91 VEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSG 150
Query: 376 KLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKTRAAREGDRRDNRLRGPGG-- 433
K FGFV FDD +PV K++ + G N E +K + +E + G GG
Sbjct: 151 KKRGFGFVTFDDHDPVDKIVLQKYHTINGH---NAEVRKALSRQEMQEVQSSRSGRGGNF 207
Query: 434 ----PRGGLGGGMRGPPRGGMVQKPGFGVGRG 461
RGG G GP G+G GRG
Sbjct: 208 GFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRG 239
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 67.4 bits (163), Expect = 3e-11
Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 21/152 (13%)
Query: 328 IEPRRMVRHPDS---------HQLFIGNLPHEVDKSELKDFFQSYGNVVELRI---NSGG 375
+EP+R V +S +LF+G + + ++ L+D+F+ YG + + I G
Sbjct: 79 VEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSG 138
Query: 376 KLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKTRAAREGDRRDNRLRGPGG-- 433
K FGFV FDD +PV K++ + G N E +K + +E + G GG
Sbjct: 139 KKRGFGFVTFDDHDPVDKIVLQKYHTINGH---NAEVRKALSRQEMQEVQSSRSGRGGNF 195
Query: 434 ----PRGGLGGGMRGPPRGGMVQKPGFGVGRG 461
RGG G GP G+G GRG
Sbjct: 196 GFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRG 227
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 66.6 bits (161), Expect = 5e-11
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 16/150 (10%)
Query: 328 IEPRRMVRHPDSHQ---------LFIGNLPHEVDKSELKDFFQSYG--NVVELRINSG-G 375
+EP+R V DS + +F+G + + ++ L+D+F+ YG V+E+ + G G
Sbjct: 84 VEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSG 143
Query: 376 KLPNFGFVVFDDSEPVQKVLSNRPIMFRG---EVRLNVEEKKTRAAREGDRRDNRLRGPG 432
K F FV FDD + V K++ + G EVR + +++ +A R + G
Sbjct: 144 KKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFG 203
Query: 433 GPRGGLGGGMRGPPRGGMVQ-KPGFGVGRG 461
G RGG GG RGG + GFG RG
Sbjct: 204 GGRGGGFGGNDNFGRGGNFSGRGGFGGSRG 233
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 66.6 bits (161), Expect = 5e-11
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 16/150 (10%)
Query: 328 IEPRRMVRHPDSHQ---------LFIGNLPHEVDKSELKDFFQSYG--NVVELRINSG-G 375
+EP+R V DS + +F+G + + ++ L+D+F+ YG V+E+ + G G
Sbjct: 84 VEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSG 143
Query: 376 KLPNFGFVVFDDSEPVQKVLSNRPIMFRG---EVRLNVEEKKTRAAREGDRRDNRLRGPG 432
K F FV FDD + V K++ + G EVR + +++ +A R + G
Sbjct: 144 KKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFG 203
Query: 433 GPRGGLGGGMRGPPRGGMVQ-KPGFGVGRG 461
G RGG GG RGG + GFG RG
Sbjct: 204 GGRGGGFGGNDNFGRGGNFSGRGGFGGSRG 233
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 60.8 bits (146), Expect = 2e-09
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 16/146 (10%)
Query: 328 IEPRRMVRHPDSHQ---------LFIGNLPHEVDKSELKDFFQSYG--NVVELRINSG-G 375
+EP+R V DS + +F+G + + ++ L+D+F+ YG V+E+ + G G
Sbjct: 84 VEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSG 143
Query: 376 KLPNFGFVVFDDSEPVQKVLSNRPIMFRG---EVRLNVEEKKTRAAREGDRRDNRLRGPG 432
K F FV FDD + V K++ + +G EVR + +++ +A R G
Sbjct: 144 KKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQRGRRGSGNFG 203
Query: 433 GPRG-GLGGGMRGPPRGGMVQKPGFG 457
G RG G GG G + GFG
Sbjct: 204 GGRGDGFGGNDNFGRGGNFSGRGGFG 229
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 60.8 bits (146), Expect = 2e-09
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 16/146 (10%)
Query: 328 IEPRRMVRHPDSHQ---------LFIGNLPHEVDKSELKDFFQSYG--NVVELRINSG-G 375
+EP+R V DS + +F+G + + ++ L+D+F+ YG V+E+ + G G
Sbjct: 84 VEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSG 143
Query: 376 KLPNFGFVVFDDSEPVQKVLSNRPIMFRG---EVRLNVEEKKTRAAREGDRRDNRLRGPG 432
K F FV FDD + V K++ + +G EVR + +++ +A R G
Sbjct: 144 KKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQRGRRGSGNFG 203
Query: 433 GPRG-GLGGGMRGPPRGGMVQKPGFG 457
G RG G GG G + GFG
Sbjct: 204 GGRGDGFGGNDNFGRGGNFSGRGGFG 229
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 60.5 bits (145), Expect = 3e-09
Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 22/146 (15%)
Query: 328 IEPRRMVRHPDS---------HQLFIGNLPHEVDKSELKDFFQSYGNVVELRI---NSGG 375
+EP+R V DS ++F+G + + ++ L+D+F+ YG + + + G
Sbjct: 105 VEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSG 164
Query: 376 KLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKTRAAREGDRRDNRLRGPGGPR 435
K F FV FDD + V K++ + G N E KK + +E ++ G R
Sbjct: 165 KKRGFAFVTFDDHDTVDKIVVQKYHTINGH---NCEVKKALSKQE-------MQSAGSQR 214
Query: 436 GGLGGGMRGPPRGGMVQKPGFGVGRG 461
G GG RGG G GRG
Sbjct: 215 GRGGGSGNFMGRGGNFGGGGGNFGRG 240
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 57.8 bits (138), Expect = 2e-08
Identities = 59/212 (27%), Positives = 92/212 (43%), Gaps = 39/212 (18%)
Query: 144 EPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQAVVSNDME----------------EHL 187
E +EE E EV E E ++ E V ++ + V + E +
Sbjct: 9513 EREEEEEAEVTEYEVMEEPEEYVVEEKLHIISKRVEAEPAEVTERQEKKIVLKPKIPAKI 9572
Query: 188 EEP----VAE------PE---PDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPA 234
EEP V E PE P P P+ E+ P ++ EE +PV E+ P K P
Sbjct: 9573 EEPPPAKVPEAPKKIVPEKKVPAPVPKKEKVPPPKVPEEPKKPVPEKKVPPKVIKMEEPL 9632
Query: 235 PADIAQT-VQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVV---KVPASQPRPESKPES 290
PA + + +Q +VT K PP VP P V KV +P+ E +P +
Sbjct: 9633 PAKVTERHMQITQEEKVLVAVTKKEAPPKARVPEE--PKRAVPEEKVLKLKPKREEEPPA 9690
Query: 291 QIPPQRPQRDQRVREQRINI-PPQRGPRPIRE 321
++ R + V+E++++I P+R P+PI+E
Sbjct: 9691 KV---TEFRKRVVKEEKVSIEAPKREPQPIKE 9719
Score = 53.1 bits (126), Expect = 5e-07
Identities = 51/213 (23%), Positives = 84/213 (39%), Gaps = 46/213 (21%)
Query: 129 DIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQAVVSNDMEEHLE 188
+++ +E+ P+EE V E EE + P VP++ + V
Sbjct: 10802 EVYEEPEEIAPEEEIAPEEEKPVPVAEEEEPEVPPPAVPEEPKKIIPEKKVP-------- 10853
Query: 189 EPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADIAQTVQEDLRT 248
+ +PE P EPE E V E + KP P P PA + V+E +
Sbjct: 10854 -VIKKPEAPPPKEPEPEKVIEKPKLKPRP-------------PPPPPAPPKEDVKE--KI 10897
Query: 249 FSWASVTSKNLPPSGAVP---------VTGIPPHVVK-VPASQPRPE----------SKP 288
F ++ K +P VP V G V K +P +P P+ +P
Sbjct: 10898 FQLKAIPKKKVPEKPQVPEKVELTPLKVPGGEKKVRKLLPERKPEPKEEVVLKSVLRKRP 10957
Query: 289 ESQIPPQRPQRDQRVREQRINIPPQRGPRPIRE 321
E + P P++ ++V++ + PP P+P+ E
Sbjct: 10958 EEEEPKVEPKKLEKVKKPAVPEPPP--PKPVEE 10988
Score = 48.9 bits (115), Expect = 1e-05
Identities = 53/215 (24%), Positives = 87/215 (40%), Gaps = 26/215 (12%)
Query: 142 VTEPQEESEEEVEEP-----EERQQTPEVVPDDSGTFYDQAVVSNDMEEHLEEPVA---- 192
VT P+ + E EE +R + P VP+ + V + + +E P
Sbjct: 9259 VTVPEVQKEIVTEEKIHVAISKRVEPPPKVPELPEKPAPEEVAPVPIPKKVEPPAPKVPE 9318
Query: 193 --------EPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADIAQTVQE 244
E +P P P+ E ++ E +PV EE P K PA + + +
Sbjct: 9319 VPKKPVPEEKKPVPVPKKEPAAPPKVPEVPKKPVPEEKIPVPVAKKKEAPPAKVPEVQKG 9378
Query: 245 DLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPAS-QPRPESKPESQIPPQRPQRDQR- 302
+ VT + P AVP IP KVP +P P + E PP+ P ++
Sbjct: 9379 VVTEEKITIVTQREESPPPAVP--EIPKK--KVPEERKPVPRKEEEVPPPPKVPALPKKP 9434
Query: 303 VREQRINIP---PQRGPRPIREAGEQGDIEPRRMV 334
V E+++ +P ++ P P E ++ +E +R V
Sbjct: 9435 VPEEKVAVPVPVAKKAPPPRAEVSKKTVVEEKRFV 9469
Score = 48.9 bits (115), Expect = 1e-05
Identities = 57/202 (28%), Positives = 81/202 (40%), Gaps = 28/202 (13%)
Query: 150 EEEVEEPEERQQTPEVVPDDSGTFYDQAVVSNDMEEHLEEPVAEPEPDPEPEPEQEPVSE 209
EEEV EE EV+P++ ++ V + EE L E P + E PE+E V E
Sbjct: 10104 EEEVLFEEEIVPEEEVLPEEEEVLPEEEEVLPEEEEVLPEEEEIPPEEEEVPPEEEYVPE 10163
Query: 210 IQEEKPEPVLEETAPEDAQKSSSPAPA-DIAQTVQEDLRTFSWASVTSKNLPPSGAVPVT 268
+E PE EE PE K PAP +I + V E + K P VP
Sbjct: 10164 EEEFVPE---EEVLPEVKPKVPVPAPVPEIKKKVTE-----KKVVIPKKEEAPPAKVP-- 10213
Query: 269 GIPPHVVKVPASQPR------------PESKPESQIP-PQRPQRDQRVREQRINIPPQRG 315
+P V + P+ PE +P S+ P+ P + V E + P R
Sbjct: 10214 EVPKKVEEKRIILPKEEEVLPVEVTEEPEEEPISEEEIPEEPPSIEEVEE----VAPPRV 10269
Query: 316 PRPIREAGEQGDIEPRRMVRHP 337
P I++A + + V P
Sbjct: 10270 PEVIKKAVPEAPTPVPKKVEAP 10291
Score = 45.8 bits (107), Expect = 8e-05
Identities = 52/224 (23%), Positives = 94/224 (41%), Gaps = 38/224 (16%)
Query: 149 SEEEVEEPEERQQTPEVVPDDSGTFYDQAVVSNDMEEHLEEPVAEPEPDPEPEPEQEPVS 208
+E++V P++ + P VP+ ++ ++ EE L V E EPE+EP+S
Sbjct: 10195 TEKKVVIPKKEEAPPAKVPEVPKKVEEKRIILPKEEEVLPVEVTE-------EPEEEPIS 10247
Query: 209 --EIQEEKP-----EPVLEETAPEDAQKSSSPAPADIAQTVQEDLRTFSWASVTSKNLPP 261
EI EE P E V PE +K+ AP + + V+ A V+ K
Sbjct: 10248 EEEIPEEPPSIEEVEEVAPPRVPEVIKKAVPEAPTPVPKKVEAPP-----AKVSKK---- 10298
Query: 262 SGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQRDQRVREQRINIPPQRGPRPIRE 321
IP V VP + ++P + P++ V ++ +PP +G + E
Sbjct: 10299 --------IPEEKVPVPVQKKEAPPAKVPEVPKKVPEKKVLVPKKEA-VPPAKGRTVLEE 10349
Query: 322 ----AGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKDFFQ 361
A Q + R+ + + + +P E + E++++F+
Sbjct: 10350 KVSVAFRQEVVVKERL--ELEVVEAEVEEIPEEEEFHEVEEYFE 10391
Score = 45.1 bits (105), Expect = 1e-04
Identities = 59/235 (25%), Positives = 88/235 (37%), Gaps = 75/235 (31%)
Query: 150 EEEVEEPEERQQTPEVVPDDSGTFYDQAVVSNDMEEHLEEPVAEPEPDPEPEPEQEPVSE 209
E++V P++ + P VP+ +EE PV E P PE +EP E
Sbjct: 10759 EKKVAVPKKPEVPPAKVPE--------VPKKPVLEEKPAVPVPERAESPPPEVYEEP-EE 10809
Query: 210 I--------QEEKPEPVLEETAPEDAQKSSSPAPADIAQTVQEDLRTFSWASVTSKNLP- 260
I +EEKP PV EE PE P PA V E+ + + K +P
Sbjct: 10810 IAPEEEIAPEEEKPVPVAEEEEPE------VPPPA-----VPEEPKKI----IPEKKVPV 10854
Query: 261 ---PSGAVPVTGIPPHVVKVPASQPRPESKPES--------------QIP----PQRPQR 299
P P P V++ P +PRP P + IP P++PQ
Sbjct: 10855 IKKPEAPPPKEPEPEKVIEKPKLKPRPPPPPPAPPKEDVKEKIFQLKAIPKKKVPEKPQV 10914
Query: 300 DQRVREQRINIP----------PQRGPRPIREA-----------GEQGDIEPRRM 333
++V + +P P+R P P E E+ +EP+++
Sbjct: 10915 PEKVELTPLKVPGGEKKVRKLLPERKPEPKEEVVLKSVLRKRPEEEEPKVEPKKL 10969
Score = 42.7 bits (99), Expect = 7e-04
Identities = 40/154 (25%), Positives = 62/154 (40%), Gaps = 21/154 (13%)
Query: 183 MEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADIAQTV 242
+EE + P EP P PE P E+ EK PV PE AP ++
Sbjct: 10478 VEEKVRVP-EEPRVPPTKVPEVLPPKEVVPEKKVPVPPAKKPEAPPPKVPEAPKEVVPEK 10536
Query: 243 QEDLRTFSWASVTSKNLP--PSGAVPVTGIPPHVVKVPASQPR--PESK----PESQI-- 292
+ + V +P P AVP +P + P S P PE+ PE ++
Sbjct: 10537 KVPVPPPKKPEVPPTKVPEVPKAAVPEKKVPEAIPPKPESPPPEVPEAPKEVVPEKKVPA 10596
Query: 293 -PPQRPQ---------RDQRVREQRINIPPQRGP 316
PP++P+ + V E+++ +PP + P
Sbjct: 10597 APPKKPEVTPVKVPEAPKEVVPEKKVPVPPPKKP 10630
Score = 42.0 bits (97), Expect = 0.001
Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 20/170 (11%)
Query: 155 EPEERQQTPEVVP--DDSGTFYDQAVVSNDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQE 212
EPEE EVV ++ ++ + + E EE V P PE ++PV E E
Sbjct: 9904 EPEEVAFEEEVVTHVEEYLVEEEEEYIHEEEEFITEEEVVPVIPVKVPEVPRKPVPE--E 9961
Query: 213 EKPEPVLEETAPEDAQKSSSPAPADIAQTVQEDLRTFSWASVTSKNLPPSGAVP-VTGIP 271
+KP PV P+ + + P ++ + +E + + K PP VP V P
Sbjct: 9962 KKPVPV-----PKKKEAPPAKVP-EVPKKPEEKVPVL----IPKKEKPPPAKVPEVPKKP 10011
Query: 272 PHVVKVPASQPRPESKPESQIP--PQRPQRDQRV---REQRINIPPQRGP 316
KVP P+ P +++P P++P +++V +++ PP + P
Sbjct: 10012 VPEEKVPVPVPKKVEAPPAKVPEVPKKPVPEKKVPVPAPKKVEAPPAKVP 10061
Score = 42.0 bits (97), Expect = 0.001
Identities = 48/233 (20%), Positives = 89/233 (38%), Gaps = 24/233 (10%)
Query: 142 VTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQAVVSNDMEEHLEEPVAEPEPDPEPE 201
V E +E E + P + PEV P AV + E + P P+
Sbjct: 10525 VPEAPKEVVPEKKVPVPPPKKPEVPPTKVPEVPKAAVPEKKVPEAIPPKPESPPPEVPEA 10584
Query: 202 PE----QEPVSEIQEEKPE--PVLEETAPEDA--QKSSSPAPADIAQTVQEDLRTFSWAS 253
P+ ++ V +KPE PV AP++ +K P + + +
Sbjct: 10585 PKEVVPEKKVPAAPPKKPEVTPVKVPEAPKEVVPEKKVPVPPPKKPEVPPTKVPEVPKVA 10644
Query: 254 VTSKNLPPSGAVPVTGIPPHVVKVP------------ASQPRPESKPESQIPPQRPQRDQ 301
V K +P + PP V + P +P P + P+ +PP++P ++
Sbjct: 10645 VPEKKVPEAIPPKPESPPPEVFEEPEEVALEEPPAEVVEEPEPAAPPQVTVPPKKPVPEK 10704
Query: 302 R---VREQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEV 351
+ V ++ +PP + P +E + + P + + P++ + +P EV
Sbjct: 10705 KAPAVVAKKPELPPVKVPEVPKEVVPEKKV-PLVVPKKPEAPPAKVPEVPKEV 10756
Score = 41.2 bits (95), Expect = 0.002
Identities = 53/223 (23%), Positives = 88/223 (39%), Gaps = 35/223 (15%)
Query: 142 VTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQAVVSNDMEEHLEEPVAEPEPDPEPE 201
V E +E E + P + PEV P + V + P +PE P
Sbjct: 10581 VPEAPKEVVPEKKVPAAPPKKPEVTPVKVPEAPKEVVPEKKVPV---PPPKKPEVPPTKV 10637
Query: 202 PE-------------------QEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADIAQTV 242
PE + P E+ EE E LEE E ++ AP +
Sbjct: 10638 PEVPKVAVPEKKVPEAIPPKPESPPPEVFEEPEEVALEEPPAEVVEEPEPAAPPQVTVPP 10697
Query: 243 QEDLRTFSWASVTSK--NLPPSGAVPVTGIPPHVV---KVPASQPRPESKPESQIPPQRP 297
++ + +V +K LPP V V +P VV KVP P+ P +++ P+ P
Sbjct: 10698 KKPVPEKKAPAVVAKKPELPP---VKVPEVPKEVVPEKKVPLVVPKKPEAPPAKV-PEVP 10753
Query: 298 QRDQRVREQRINIP--PQRGPRPIREAGEQGDIEPRRMVRHPD 338
+ + V E+++ +P P+ P + E ++ +E + V P+
Sbjct: 10754 K--EVVPEKKVAVPKKPEVPPAKVPEVPKKPVLEEKPAVPVPE 10794
Score = 40.8 bits (94), Expect = 0.003
Identities = 48/165 (29%), Positives = 69/165 (41%), Gaps = 26/165 (15%)
Query: 148 ESEEEVEEPEER--QQTPEVVPDDSGTFYDQAVVSNDME----EHLEEPVAEPE-PDPEP 200
+ EEE EE EE ++ E P + YDQ + E E EE + EPE P P
Sbjct: 9740 QREEEYEEYEEYDYKEFEEYEPTEE---YDQYEEYEEREYERYEEHEEYITEPEKPIPVK 9796
Query: 201 EPEQEPVSEIQEEKPEPVLEETAPED-----AQKSSSPAPADIAQTVQEDLRTFSWASVT 255
+EPV + P VL++ PE+ K P P + + ++ S+T
Sbjct: 9797 PVPEEPVPTKPKAPPAKVLKKAVPEEKVPVPIPKKLKPPPPKVPEEPKKVFEEKIRISIT 9856
Query: 256 SKN----LPPSGAVPVTGIPPHVV---KVPASQPRPESKPESQIP 293
+ P+ VP+ P VV KVP PR E P ++P
Sbjct: 9857 KREKEQVTEPAAKVPMK--PKRVVAEEKVPV--PRKEVAPPVRVP 9897
Score = 39.7 bits (91), Expect = 0.006
Identities = 47/184 (25%), Positives = 72/184 (39%), Gaps = 46/184 (25%)
Query: 134 QDEVFGGFVTEPQEESEEEVEEPEERQQT-----PEVVPDDSGTFYDQAVVSNDMEEHLE 188
++EV V + E EE EP++ ++ PE P + V+ E +
Sbjct: 10944 KEEVVLKSVLRKRPEEEEPKVEPKKLEKVKKPAVPEPPPPKPVEEVEVPTVTK-RERKIP 11002
Query: 189 EPVAEPE-----PDPEPEPEQEPVSEIQEEKPEPVLEE--------TAPEDAQKSSSPAP 235
EP PE P P PEP+ +P +E++ KP PV E T P +K+ + AP
Sbjct: 11003 EPTKVPEIKPAIPLPAPEPKPKPEAEVKTIKPPPVEPEPTPIAAPVTVPVVGKKAEAKAP 11062
Query: 236 ADIAQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIP---PHVVKVPASQPRPES---KPE 289
+ A P G P+ G+P P ++ + RP S KP
Sbjct: 11063 KEEA-------------------AKPKG--PIKGVPKKTPSPIEAERRKLRPGSGGEKPP 11101
Query: 290 SQIP 293
+ P
Sbjct: 11102 DEAP 11105
Score = 38.9 bits (89), Expect = 0.010
Identities = 45/210 (21%), Positives = 84/210 (40%), Gaps = 29/210 (13%)
Query: 144 EPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQAVVSNDMEEHL---------EEPVAEP 194
+P E ++ V P++++ P VP+ ++ V +E ++PV E
Sbjct: 9956 KPVPEEKKPVPVPKKKEAPPAKVPEVPKKPEEKVPVLIPKKEKPPPAKVPEVPKKPVPEE 10015
Query: 195 E-PDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADIAQTVQEDLRTFSWAS 253
+ P P P+ + P +++ E +PV E+ P A K PA + +
Sbjct: 10016 KVPVPVPKKVEAPPAKVPEVPKKPVPEKKVPVPAPKKVEAPPAKVPE------------- 10062
Query: 254 VTSKNLPPSGAVPVTGIPPHVVKVPASQPR-PESKPESQIPPQRPQRDQRVREQRINIPP 312
K L P P T +P KV A P+ P+ + +P PQ ++ + E+ I
Sbjct: 10063 -VPKKLIPEEKKP-TPVPK---KVEAPPPKVPKKREPVPVPVALPQEEEVLFEEEIVPEE 10117
Query: 313 QRGPRPIREAGEQGDIEPRRMVRHPDSHQL 342
+ P E+ ++ P P+ ++
Sbjct: 10118 EVLPEEEEVLPEEEEVLPEEEEVLPEEEEI 10147
Score = 38.5 bits (88), Expect = 0.013
Identities = 49/218 (22%), Positives = 82/218 (37%), Gaps = 36/218 (16%)
Query: 147 EESEEEVEEPEERQQTPEVVPDDSGTFYDQAVVSNDMEEHLEEPVAEPEPDPEPE----- 201
EE E EE E + EV+P++ ++ V + E EE PE + PE
Sbjct: 10122 EEEEVLPEEEEVLPEEEEVLPEEEEIPPEEEEVPPEEEYVPEEEEFVPEEEVLPEVKPKV 10181
Query: 202 PEQEPVSEIQEEKPE-----PVLEETAPEDA--------------QKSSSPAPADIAQTV 242
P PV EI+++ E P EE P K P ++ +
Sbjct: 10182 PVPAPVPEIKKKVTEKKVVIPKKEEAPPAKVPEVPKKVEEKRIILPKEEEVLPVEVTEEP 10241
Query: 243 QEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKV--------PASQPRPESKPESQIPP 294
+E+ S + + PPS PP V +V P P+ P +++
Sbjct: 10242 EEE--PISEEEIPEE--PPSIEEVEEVAPPRVPEVIKKAVPEAPTPVPKKVEAPPAKVSK 10297
Query: 295 QRPQRDQRVREQRINIPPQRGPRPIREAGEQGDIEPRR 332
+ P+ V Q+ PP + P ++ E+ + P++
Sbjct: 10298 KIPEEKVPVPVQKKEAPPAKVPEVPKKVPEKKVLVPKK 10335
Score = 38.5 bits (88), Expect = 0.013
Identities = 40/176 (22%), Positives = 68/176 (38%), Gaps = 36/176 (20%)
Query: 145 PQEESEEEVEEPEERQQTPEVVPDDSGTFYDQAVVSNDMEEHLEEPVAEPEPDPEPEPEQ 204
P+++ E+ + PE+ + TP VP E+ + + + E +P+P+ E
Sbjct: 10904 PKKKVPEKPQVPEKVELTPLKVPGG--------------EKKVRKLLPERKPEPKEEVVL 10949
Query: 205 EPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADIAQTVQEDLRTFSWASVTSKNLPPSGA 264
+ V + E+ EP +E E +K + P P + V+E
Sbjct: 10950 KSVLRKRPEEEEPKVEPKKLEKVKKPAVPEPPP-PKPVEE-------------------- 10988
Query: 265 VPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQRDQRVREQRINIPP-QRGPRPI 319
V V + K+P PE KP +P P+ + I PP + P PI
Sbjct: 10989 VEVPTVTKRERKIPEPTKVPEIKPAIPLPAPEPKPKPEAEVKTIKPPPVEPEPTPI 11044
Score = 38.1 bits (87), Expect = 0.017
Identities = 51/193 (26%), Positives = 76/193 (39%), Gaps = 29/193 (15%)
Query: 144 EPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQAVVSNDMEEHLEEPVAEPEPDPEPEPE 203
EPQ E + E +ER T E + VS EE EE E D + E
Sbjct: 9713 EPQPIKEVTIMEEKERAYTLE-----------EEAVSVQREEEYEE---YEEYDYKEFEE 9758
Query: 204 QEPVSEI-QEEKPEPVLEETAPEDAQKSSSPAPADIAQTVQEDLRTFSWASVTSKNLPPS 262
EP E Q E+ E E E + + P + V E+ V +K P
Sbjct: 9759 YEPTEEYDQYEEYEEREYERYEEHEEYITEPEKPIPVKPVPEE-------PVPTKPKAPP 9811
Query: 263 GAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQRDQRVREQRINIP-PQRGPRPIRE 321
V +P KVP P+ P PP+ P+ ++V E++I I +R + E
Sbjct: 9812 AKVLKKAVPEE--KVPVPIPKKLKPP----PPKVPEEPKKVFEEKIRISITKREKEQVTE 9865
Query: 322 AGEQGDIEPRRMV 334
+ ++P+R+V
Sbjct: 9866 PAAKVPMKPKRVV 9878
Score = 35.8 bits (81), Expect = 0.085
Identities = 41/179 (22%), Positives = 72/179 (40%), Gaps = 36/179 (20%)
Query: 141 FVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQAVVSNDMEEHLEEPVAEPEPDPEP 200
F+ Q EEE E+ + EV + +++ E E+ + +P +
Sbjct: 10401 FIKLEQHRVEEE-HRVEKVHRVIEVFEAEEVEVFEKPKAPPKGPEISEKIIPPKKPPTKV 10459
Query: 201 EPEQEPVSEIQEEKPEPVLEE--TAPEDAQKSSSPAPADIAQTVQEDLRTFSWASVTSKN 258
P +EP +++ E + V+EE PE+ + + P +
Sbjct: 10460 VPRKEPPAKVPEVPKKIVVEEKVRVPEEPRVPPTKVP---------------------EV 10498
Query: 259 LPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQRDQR-VREQRINIPPQRGP 316
LPP VP +P VP P KPE+ PP+ P+ + V E+++ +PP + P
Sbjct: 10499 LPPKEVVPEKKVP-----VP-----PAKKPEAP-PPKVPEAPKEVVPEKKVPVPPPKKP 10546
Score = 35.4 bits (80), Expect = 0.11
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 145 PQEESEEEVEEPEERQQTPEVVPDDSGTFYDQAVVSNDMEEHLEEPVAEPEPDPEPEPEQ 204
P E +EE EEP ++ PE P + V + E +++ V E P P P+ +
Sbjct: 10234 PVEVTEEPEEEPISEEEIPEEPPSIEEV---EEVAPPRVPEVIKKAVPE-APTPVPKKVE 10289
Query: 205 EPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADIAQ 240
P +++ ++ P EE P QK +P PA + +
Sbjct: 10290 APPAKVSKKIP----EEKVPVPVQKKEAP-PAKVPE 10320
Score = 32.7 bits (73), Expect = 0.72
Identities = 47/224 (20%), Positives = 86/224 (38%), Gaps = 35/224 (15%)
Query: 145 PQEESEEEVEEPEERQQTPE----VVPDDSGTFYDQAVVSNDMEEHLEEPVAEPEPDPEP 200
P++ E++V P++ P V+ + + Q VV ++E LE V E E + P
Sbjct: 10322 PKKVPEKKVLVPKKEAVPPAKGRTVLEEKVSVAFRQEVV---VKERLELEVVEAEVEEIP 10378
Query: 201 EPEQ-------------EPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADIAQTVQEDLR 247
E E+ V E + + V EE E + A+ + ++
Sbjct: 10379 EEEEFHEVEEYFEEGEFHEVEEFIKLEQHRVEEEHRVEKVHRVIEVFEAEEVEVFEKPKA 10438
Query: 248 TFSWASVTSKNLPP----SGAVPVTGIPPHVVKVP--------ASQPRPESKPESQIPPQ 295
++ K +PP + VP P V +VP P P +++P
Sbjct: 10439 PPKGPEISEKIIPPKKPPTKVVPRKEPPAKVPEVPKKIVVEEKVRVPEEPRVPPTKVPEV 10498
Query: 296 RPQRDQRVREQRINIPPQRGPR--PIREAGEQGDIEPRRMVRHP 337
P ++ V E+++ +PP + P P + ++ P + V P
Sbjct: 10499 LPPKEV-VPEKKVPVPPAKKPEAPPPKVPEAPKEVVPEKKVPVP 10541
Score = 31.6 bits (70), Expect = 1.6
Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 24/159 (15%)
Query: 141 FVTEPQEESEE-EVEEPEERQQTPEVVPDDSGTFYDQAVVSNDMEEHLEEPVAEPEPDPE 199
+ EP E+ EE +VE +E + E ++ +Y++ ++ EE EE E E
Sbjct: 9093 YYEEPDEDYEEIKVEAKKEVHEEWEEDFEEGQEYYEREEGYDEGEEEWEEAYQERE---- 9148
Query: 200 PEPEQEPVSEIQEEKPEPVLEETAPEDA-QKSSSPAPADIAQTVQEDLRTFSWASVTSKN 258
V ++Q+E E E P +K + P P I + V E + TS+
Sbjct: 9149 -------VIQVQKEVYEESHERKVPAKVPEKKAPPPPKVIKKPVIEKIEK------TSRR 9195
Query: 259 LPPSGAVPVTGIPPHVVKV----PASQPRPESKPESQIP 293
+ V VT +P K+ P+ P E E ++P
Sbjct: 9196 MEEE-KVQVTKVPEVSKKIVPQKPSRTPVQEEVIEVKVP 9233
>gi|169203146 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 56.2 bits (134), Expect = 6e-08
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 18/132 (13%)
Query: 328 IEPRRMVRHPDSHQ---------LFIGNLPHEVDKSELKDFFQSYG--NVVELRINSG-G 375
+EP+ V DS + +F+G + + ++ L+D+++ YG V+E+ + G G
Sbjct: 84 VEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQYGKTEVIEIMTDQGSG 143
Query: 376 KLPNFGFVVFDDSEPVQKVLSNRPIMFRG---EVRLNVEEKKTRAAREGDRRDNRLRGPG 432
K +F FV FD+ + K++ + + G EVR + ++K +A R + G G
Sbjct: 144 KKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMASAPSSQRSRS---GSG 200
Query: 433 GPRGGLGGGMRG 444
GG GGG G
Sbjct: 201 NFGGGRGGGFSG 212
>gi|89035135 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 56.2 bits (134), Expect = 6e-08
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 18/132 (13%)
Query: 328 IEPRRMVRHPDSHQ---------LFIGNLPHEVDKSELKDFFQSYG--NVVELRINSG-G 375
+EP+ V DS + +F+G + + ++ L+D+++ YG V+E+ + G G
Sbjct: 84 VEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQYGKTEVIEIMTDQGSG 143
Query: 376 KLPNFGFVVFDDSEPVQKVLSNRPIMFRG---EVRLNVEEKKTRAAREGDRRDNRLRGPG 432
K +F FV FD+ + K++ + + G EVR + ++K +A R + G G
Sbjct: 144 KKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMASAPSSQRSRS---GSG 200
Query: 433 GPRGGLGGGMRG 444
GG GGG G
Sbjct: 201 NFGGGRGGGFSG 212
>gi|89034333 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 56.2 bits (134), Expect = 6e-08
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 18/132 (13%)
Query: 328 IEPRRMVRHPDSHQ---------LFIGNLPHEVDKSELKDFFQSYG--NVVELRINSG-G 375
+EP+ V DS + +F+G + + ++ L+D+++ YG V+E+ + G G
Sbjct: 84 VEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQYGKTEVIEIMTDQGSG 143
Query: 376 KLPNFGFVVFDDSEPVQKVLSNRPIMFRG---EVRLNVEEKKTRAAREGDRRDNRLRGPG 432
K +F FV FD+ + K++ + + G EVR + ++K +A R + G G
Sbjct: 144 KKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMASAPSSQRSRS---GSG 200
Query: 433 GPRGGLGGGMRG 444
GG GGG G
Sbjct: 201 NFGGGRGGGFSG 212
>gi|4506903 splicing factor, arginine/serine-rich 9 [Homo sapiens]
Length = 221
Score = 55.5 bits (132), Expect = 1e-07
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 341 QLFIGNLPHEVDKSELKDFFQSYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPI 400
++++GNLP +V + +L+D F YG + E+ + + L F FV F+D + + R
Sbjct: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG 74
Query: 401 MFRGEVRLNVEEKKTRAAREGDRRDNRLRGPGGPRGGLGGGMRGPPRGGMVQ 452
G+ RL VE +T R G R R GP R + G P G Q
Sbjct: 75 YDYGQCRLRVEFPRTYGGRGGWPRGGR-NGPPTRRSDFRVLVSGLPPSGSWQ 125
>gi|155030232 proline, glutamic acid and leucine rich protein 1 [Homo
sapiens]
Length = 1130
Score = 54.7 bits (130), Expect = 2e-07
Identities = 49/181 (27%), Positives = 73/181 (40%), Gaps = 36/181 (19%)
Query: 144 EPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQAVVSNDMEEHLEEPVAEPEPDPEPEPE 203
E +EE EEE EE EE + E D+ F ++ + EE EE E E + E E E
Sbjct: 892 EEEEEEEEEEEEEEEEEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEEDE 951
Query: 204 QEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADIAQTVQEDLRTFSWASVTSKNLPPSG 263
+E E + E+ E + TA + ++ + P P LPP
Sbjct: 952 EE---EEELEEVEDLEFGTAGGEVEEGAPPPP----------------------TLPP-- 984
Query: 264 AVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQRDQRVREQRINIPPQRGPRPIREAG 323
A+P PP V QP PE +P + + P ++ E+ + P P + G
Sbjct: 985 ALPPPESPPKV------QPEPEPEPGLLLEVEEPGTEE---ERGADTAPTLAPEALPSQG 1035
Query: 324 E 324
E
Sbjct: 1036 E 1036
Score = 40.4 bits (93), Expect = 0.003
Identities = 44/179 (24%), Positives = 66/179 (36%), Gaps = 31/179 (17%)
Query: 135 DEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQAVVSNDMEEHLEEPVAEP 194
+E G E +EE EEE EE EE + G + A + L P + P
Sbjct: 936 EEEEGELEEEEEEEDEEEEEELEEVEDLE--FGTAGGEVEEGAPPPPTLPPALPPPESPP 993
Query: 195 EPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADIAQTVQEDLRTFSWASV 254
+ PEPEPE + E++ EP EE D + +P V+ +
Sbjct: 994 KVQPEPEPEPGLLLEVE----EPGTEEERGADTAPTLAPEALPSQGEVERE--------- 1040
Query: 255 TSKNLPPSGAVPVTGIPPH--VVKVPASQP------RPESKPESQIPPQRPQRDQRVRE 305
G P G PP V + P++ P + + Q PP+ P ++ E
Sbjct: 1041 --------GESPAAGPPPQELVEEEPSAPPTLLEEETEDGSDKVQPPPETPAEEEMETE 1091
>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
[Homo sapiens]
Length = 285
Score = 53.9 bits (128), Expect = 3e-07
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 323 GEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKDFFQSYGNVVELRIN---SGGKLPN 379
G +GD + D+ ++F+G L + K +LKD+F +G VV+ I + G+
Sbjct: 54 GAEGD-QINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 112
Query: 380 FGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKTRAARE 420
FGF++F D+ V+KVL + G V ++ KK A ++
Sbjct: 113 FGFILFKDAASVEKVLDQKEHRLDGRV---IDPKKAMAMKK 150
Score = 52.8 bits (125), Expect = 7e-07
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
Query: 341 QLFIGNLPHEVDKSELKDFFQSYGNVVELRINSGGKL---PNFGFVVFDDSEPVQKVLSN 397
++F+G L E + +++++F +G + + + KL F F+ F + EPV+KVL
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214
Query: 398 RPIMFRG---EVRLNVEEKKTRAAREGD-RRDNRLRGPGGPRGGLGGGMRGPPRGGMVQK 453
+ G E+++ ++ + + G R NR RG G GG GGG +G G Q+
Sbjct: 215 KFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGGGGGGQGSTNYGKSQR 274
Query: 454 PG 455
G
Sbjct: 275 RG 276
>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
[Homo sapiens]
Length = 332
Score = 53.9 bits (128), Expect = 3e-07
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 323 GEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKDFFQSYGNVVELRIN---SGGKLPN 379
G +GD + D+ ++F+G L + K +LKD+F +G VV+ I + G+
Sbjct: 54 GAEGD-QINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 112
Query: 380 FGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKTRAARE 420
FGF++F D+ V+KVL + G V ++ KK A ++
Sbjct: 113 FGFILFKDAASVEKVLDQKEHRLDGRV---IDPKKAMAMKK 150
Score = 49.3 bits (116), Expect = 7e-06
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 10/134 (7%)
Query: 341 QLFIGNLPHEVDKSELKDFFQSYGNVVELRINSGGKL---PNFGFVVFDDSEPVQKVLSN 397
++F+G L E + +++++F +G + + + KL F F+ F + EPV+KVL
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214
Query: 398 RPIMFRG---EVRLNVEEKKTRAAREGD-RRDNRLRGPGGPRGGLGGGMRGPPRG---GM 450
+ G E+++ ++ + + G R NR RG G GG GGG + G
Sbjct: 215 KFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGN 274
Query: 451 VQKPGFGVGRGLAP 464
G+G +G P
Sbjct: 275 YWNQGYGYQQGYGP 288
>gi|14327896 cyclin B1 [Homo sapiens]
Length = 433
Score = 53.5 bits (127), Expect = 4e-07
Identities = 25/48 (52%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 190 PVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPAD 237
PV+EP P+PEPEPE EPV E ++ PEP+L +TA ++S APA+
Sbjct: 93 PVSEPVPEPEPEPEPEPVKE-EKLSPEPILVDTASPSPMETSGCAPAE 139
Score = 30.8 bits (68), Expect = 2.7
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 14/111 (12%)
Query: 222 TAPEDAQKSS---SPAPADIAQTVQEDLRTF------SWASVTSKNLPPSGAVPVTGIPP 272
TAP K A DI V E L+ + S T K + P+ +P
Sbjct: 29 TAPAATSKPGLRPRTALGDIGNKVSEQLQAKMPMKKEAKPSATGKVIDKKLPKPLEKVPM 88
Query: 273 HVVKVPASQPRPESKPESQIPPQRPQRDQRVREQRINIPPQRGPRPIREAG 323
+V VP S+P PE +PE P P +++++ + I + P P+ +G
Sbjct: 89 -LVPVPVSEPVPEPEPE---PEPEPVKEEKLSPEPI-LVDTASPSPMETSG 134
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 53.5 bits (127), Expect = 4e-07
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 338 DSHQLFIGNLPHEVDKSELKDFFQSYGNVVELRINSG---GKLPNFGFVVFDDSEPVQKV 394
D ++FIG L + K +LKD+F +G VV+ + G+ FGFV+F +SE V KV
Sbjct: 76 DEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 135
Query: 395 LSNRPIMFRGEVRLNVEEKKTRAAR 419
+ + G+V ++ K+ +A +
Sbjct: 136 MDQKEHKLNGKV---IDPKRAKAMK 157
Score = 45.8 bits (107), Expect = 8e-05
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 16/128 (12%)
Query: 328 IEPRR---MVRHPDSHQLFIGNLPHEVDKSELKDFFQSYGNVVELRI---NSGGKLPNFG 381
I+P+R M ++F+G L + + +++++F +G V + + N K F
Sbjct: 148 IDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFC 207
Query: 382 FVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKTRAAREGDRRDNRLRGPGGPRGGLGGG 441
F+ F + EPV+K++ + V L+ E K ++E ++ + G RGG G
Sbjct: 208 FITFKEEEPVKKIMEKK----YHNVGLSKCEIKVAMSKEQYQQQQQ----WGSRGGFAGR 259
Query: 442 MRGPPRGG 449
RG RGG
Sbjct: 260 ARG--RGG 265
>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
Length = 287
Score = 53.5 bits (127), Expect = 4e-07
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 338 DSHQLFIGNLPHEVDKSELKDFFQSYGNVVELRINSG---GKLPNFGFVVFDDSEPVQKV 394
D ++FIG L + K +LKD+F +G VV+ + G+ FGFV+F +SE V KV
Sbjct: 76 DEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 135
Query: 395 LSNRPIMFRGEVRLNVEEKKTRAAR 419
+ + G+V ++ K+ +A +
Sbjct: 136 MDQKEHKLNGKV---IDPKRAKAMK 157
Score = 47.8 bits (112), Expect = 2e-05
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 17/136 (12%)
Query: 328 IEPRR---MVRHPDSHQLFIGNLPHEVDKSELKDFFQSYGNVVELRI---NSGGKLPNFG 381
I+P+R M ++F+G L + + +++++F +G V + + N K F
Sbjct: 148 IDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFC 207
Query: 382 FVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKTRAAREGDRRDNRLRGPGGPRGGLGGG 441
F+ F + EPV+K++ + V L+ E K ++E ++ + G RGG G
Sbjct: 208 FITFKEEEPVKKIMEKK----YHNVGLSKCEIKVAMSKEQYQQQQQ----WGSRGGFAGR 259
Query: 442 MRGPPRGGMVQKPGFG 457
RG RGG Q+ G+G
Sbjct: 260 ARG--RGG-DQQSGYG 272
>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
Length = 355
Score = 52.0 bits (123), Expect = 1e-06
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 341 QLFIGNLPHEVDKSELKDFFQSYGNVVELRINSG---GKLPNFGFVVFDDSEPVQKVLSN 397
++FIG L + K +LKD+F +G VV+ + G+ FGFV+F +SE V KV+
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 398 RPIMFRGEVRLNVEEKKTRAAR 419
+ G+V ++ K+ +A +
Sbjct: 158 KEHKLNGKV---IDPKRAKAMK 176
Score = 45.8 bits (107), Expect = 8e-05
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 16/128 (12%)
Query: 328 IEPRR---MVRHPDSHQLFIGNLPHEVDKSELKDFFQSYGNVVELRI---NSGGKLPNFG 381
I+P+R M ++F+G L + + +++++F +G V + + N K F
Sbjct: 167 IDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFC 226
Query: 382 FVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKTRAAREGDRRDNRLRGPGGPRGGLGGG 441
F+ F + EPV+K++ + V L+ E K ++E ++ + G RGG G
Sbjct: 227 FITFKEEEPVKKIMEKK----YHNVGLSKCEIKVAMSKEQYQQQQQ----WGSRGGFAGR 278
Query: 442 MRGPPRGG 449
RG RGG
Sbjct: 279 ARG--RGG 284
>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
[Homo sapiens]
Length = 306
Score = 52.0 bits (123), Expect = 1e-06
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 341 QLFIGNLPHEVDKSELKDFFQSYGNVVELRINSG---GKLPNFGFVVFDDSEPVQKVLSN 397
++FIG L + K +LKD+F +G VV+ + G+ FGFV+F +SE V KV+
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 398 RPIMFRGEVRLNVEEKKTRAAR 419
+ G+V ++ K+ +A +
Sbjct: 158 KEHKLNGKV---IDPKRAKAMK 176
Score = 47.8 bits (112), Expect = 2e-05
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 17/136 (12%)
Query: 328 IEPRR---MVRHPDSHQLFIGNLPHEVDKSELKDFFQSYGNVVELRI---NSGGKLPNFG 381
I+P+R M ++F+G L + + +++++F +G V + + N K F
Sbjct: 167 IDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFC 226
Query: 382 FVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKTRAAREGDRRDNRLRGPGGPRGGLGGG 441
F+ F + EPV+K++ + V L+ E K ++E ++ + G RGG G
Sbjct: 227 FITFKEEEPVKKIMEKK----YHNVGLSKCEIKVAMSKEQYQQQQQ----WGSRGGFAGR 278
Query: 442 MRGPPRGGMVQKPGFG 457
RG RGG Q+ G+G
Sbjct: 279 ARG--RGG-DQQSGYG 291
>gi|118582269 splicing factor, arginine/serine-rich 1 isoform 2
[Homo sapiens]
Length = 201
Score = 51.6 bits (122), Expect = 1e-06
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 18/110 (16%)
Query: 341 QLFIGNLPHEVDKSELKDFFQSYGNV--VELRINSGGKLPNFGFVVFDDSEPVQKVLSNR 398
++++GNLP ++ +++D F YG + ++L+ GG P F FV F+D + + R
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGG--PPFAFVEFEDPRDAEDAVYGR 74
Query: 399 PIMFRGEVRLNVEEKKTRAAREGDRRDNRLRGPGGPRGGLGGGMRGPPRG 448
RL VE ++ G G RGG GGG G PRG
Sbjct: 75 DGYDYDGYRLRVEFPRS--------------GRGTGRGGGGGGGGGAPRG 110
>gi|5902076 splicing factor, arginine/serine-rich 1 isoform 1 [Homo
sapiens]
Length = 248
Score = 51.6 bits (122), Expect = 1e-06
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 18/110 (16%)
Query: 341 QLFIGNLPHEVDKSELKDFFQSYGNV--VELRINSGGKLPNFGFVVFDDSEPVQKVLSNR 398
++++GNLP ++ +++D F YG + ++L+ GG P F FV F+D + + R
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGG--PPFAFVEFEDPRDAEDAVYGR 74
Query: 399 PIMFRGEVRLNVEEKKTRAAREGDRRDNRLRGPGGPRGGLGGGMRGPPRG 448
RL VE ++ G G RGG GGG G PRG
Sbjct: 75 DGYDYDGYRLRVEFPRS--------------GRGTGRGGGGGGGGGAPRG 110
>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
Length = 172
Score = 50.4 bits (119), Expect = 3e-06
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 20/130 (15%)
Query: 338 DSHQLFIGNLPHEVDKSELKDFFQSYGNVVELRI---NSGGKLPNFGFVVF---DDSEPV 391
D +LF+G L + ++ L+ F YG + E+ + + FGFV F DD++
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 392 QKVLSNRPIMFRGEVRLNVEEKKTRAAREGDRRDNRLRGPGGPRGGLGGGMRGPPRGGMV 451
++ + +V+ ++ R + G DNR R G RGG GG RG RGG
Sbjct: 64 MMAMNGK----------SVDGRQIRVDQAGKSSDNRSR---GYRGGSAGG-RGFFRGGRG 109
Query: 452 QKPGFGVGRG 461
+ GF G G
Sbjct: 110 RGRGFSRGGG 119
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 49.7 bits (117), Expect = 6e-06
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 10/136 (7%)
Query: 333 MVRHPDSHQLFIGNLPHEVDKSELKDFFQSYGNVVE---LRINSGGKLPNFGFVVFD--- 386
MV +LFIG L E ++ L+ F YG +VE ++ K F FV F+
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 387 DSEPVQKVLSNRPIMFRGEVRLNVEEKKTRAAREGDRRDNRLRG-PGGPRGGLG--GGMR 443
D++ + ++ + + + + + R G R RG P G RGG G GG R
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR 120
Query: 444 GPP-RGGMVQKPGFGV 458
GPP RGG + G+ +
Sbjct: 121 GPPSRGGHMDDGGYSM 136
>gi|93277122 RNA binding motif protein 4 [Homo sapiens]
Length = 364
Score = 49.3 bits (116), Expect = 7e-06
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 341 QLFIGNLPHEVDKSELKDFFQSYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPI 400
+LFIGNLP E + E++ F+ YG V+E I + N+GFV +D + + N
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDI-----IKNYGFVHIEDKTAAEDAIRNLHH 57
Query: 401 MFRGEVRLNVEEKKTRA 417
V +NVE K ++
Sbjct: 58 YKLHGVNINVEASKNKS 74
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.135 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,935,589
Number of Sequences: 37866
Number of extensions: 1436359
Number of successful extensions: 15898
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 865
Number of HSP's that attempted gapping in prelim test: 9838
Number of HSP's gapped (non-prelim): 4594
length of query: 466
length of database: 18,247,518
effective HSP length: 106
effective length of query: 360
effective length of database: 14,233,722
effective search space: 5124139920
effective search space used: 5124139920
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.