Search of human proteins with 38261969

Search of human proteins with 38261969

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|38261969 APG12 autophagy 12-like [Homo sapiens]
         (187 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|38261969 APG12 autophagy 12-like [Homo sapiens]                    380   e-106
gi|169171742 PREDICTED: hypothetical protein LOC442676 [Homo sap...    36   0.022
gi|169172340 PREDICTED: hypothetical protein LOC442676 [Homo sap...    36   0.022
gi|169170016 PREDICTED: hypothetical protein LOC442676 [Homo sap...    36   0.022
gi|239508816 PREDICTED: hypothetical protein LOC442676 [Homo sap...    36   0.022
gi|22027482 neuronal PAS domain protein 1 [Homo sapiens]               34   0.084
gi|150417978 platelet glycoprotein Ib alpha polypeptide precurso...    33   0.14 
gi|38569423 ATP citrate lyase isoform 2 [Homo sapiens]                 32   0.32 
gi|31563518 microtubule-associated protein 1 light chain 3 alpha...    32   0.32 
gi|119943102 CREB binding protein isoform b [Homo sapiens]             32   0.32 
gi|119943104 CREB binding protein isoform a [Homo sapiens]             32   0.32 
gi|83776596 CaM kinase-like vesicle-associated [Homo sapiens]          32   0.42 
gi|50843820 sickle tail isoform 1 [Homo sapiens]                       32   0.42 
gi|239745132 PREDICTED: similar to Golgin subfamily A member 8-l...    31   0.54 
gi|83367077 mucin 16 [Homo sapiens]                                    31   0.71 
gi|239750798 PREDICTED: similar to hect domain and RLD 2 [Homo s...    31   0.71 
gi|21536357 TBP-associated factor 6 isoform delta [Homo sapiens]       31   0.71 
gi|21536355 TBP-associated factor 6 isoform gamma [Homo sapiens]       31   0.71 
gi|5032147 TBP-associated factor 6 isoform alpha [Homo sapiens]        31   0.71 
gi|21536359 TBP-associated factor 6 isoform alpha [Homo sapiens]       31   0.71 
gi|14210522 microtubule-associated protein 1 light chain 3 alpha...    31   0.71 
gi|91208420 bassoon protein [Homo sapiens]                             31   0.71 
gi|116284392 mucin 2 precursor [Homo sapiens]                          30   1.2  
gi|169208016 PREDICTED: similar to golgi autoantigen, golgin sub...    30   1.2  
gi|31982906 cingulin-like 1 [Homo sapiens]                             30   1.2  
gi|169208042 PREDICTED: similar to Golgin subfamily A member 8-l...    30   1.6  
gi|169208038 PREDICTED: similar to Golgin subfamily A member 8-l...    30   1.6  
gi|169208036 PREDICTED: similar to Golgin subfamily A member 8-l...    30   1.6  
gi|169208018 PREDICTED: similar to Golgin subfamily A member 8-l...    30   1.6  
gi|169208014 PREDICTED: Golgin subfamily A member 8-like protein...    30   1.6  

>gi|38261969 APG12 autophagy 12-like [Homo sapiens]
          Length = 187

 Score =  380 bits (977), Expect = e-106
 Identities = 187/187 (100%), Positives = 187/187 (100%)

Query: 1   MTSREHQVSLCNCVPLLRRLLCDAPWRKARPLHALSRYFRSRVSPSKMAEEPQSVLQLPT 60
           MTSREHQVSLCNCVPLLRRLLCDAPWRKARPLHALSRYFRSRVSPSKMAEEPQSVLQLPT
Sbjct: 1   MTSREHQVSLCNCVPLLRRLLCDAPWRKARPLHALSRYFRSRVSPSKMAEEPQSVLQLPT 60

Query: 61  SIAAGGEGLTDVSPETTTPEPPSSAAVSPGTEEPAGDTKKKIDILLKAVGDTPIMKTKKW 120
           SIAAGGEGLTDVSPETTTPEPPSSAAVSPGTEEPAGDTKKKIDILLKAVGDTPIMKTKKW
Sbjct: 61  SIAAGGEGLTDVSPETTTPEPPSSAAVSPGTEEPAGDTKKKIDILLKAVGDTPIMKTKKW 120

Query: 121 AVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHY 180
           AVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHY
Sbjct: 121 AVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHY 180

Query: 181 CKSQAWG 187
           CKSQAWG
Sbjct: 181 CKSQAWG 187


>gi|169171742 PREDICTED: hypothetical protein LOC442676 [Homo
           sapiens]
          Length = 679

 Score = 35.8 bits (81), Expect = 0.022
 Identities = 33/115 (28%), Positives = 44/115 (38%), Gaps = 19/115 (16%)

Query: 9   SLCNCVPLLRRLLCDAPWRKARPLHALSRYFRSRVSPSKMAEEPQSVLQLPTSIAAGGEG 68
           SLC CVPL   +LC  P    +P  A  R   S    S  +++P  +  +      GG G
Sbjct: 217 SLCGCVPL---VLCPLPDPSLQPHEA--RQPASHSVASNQSKQPAKLAAVAHERPPGGTG 271

Query: 69  LTDVS--PETTTPEPPSSAAVSPGTEEPAGDTKKKIDILLKAVGDTPIMKTKKWA 121
             D    P  T PE P      PGT    G       ++       P M+ + WA
Sbjct: 272 SVDPGRPPGATCPESP-----GPGTPHTLG-------VVEPGKSPPPTMEEEPWA 314


>gi|169172340 PREDICTED: hypothetical protein LOC442676 [Homo
           sapiens]
          Length = 679

 Score = 35.8 bits (81), Expect = 0.022
 Identities = 33/115 (28%), Positives = 44/115 (38%), Gaps = 19/115 (16%)

Query: 9   SLCNCVPLLRRLLCDAPWRKARPLHALSRYFRSRVSPSKMAEEPQSVLQLPTSIAAGGEG 68
           SLC CVPL   +LC  P    +P  A  R   S    S  +++P  +  +      GG G
Sbjct: 217 SLCGCVPL---VLCPLPDPSLQPHEA--RQPASHSVASNQSKQPAKLAAVAHERPPGGTG 271

Query: 69  LTDVS--PETTTPEPPSSAAVSPGTEEPAGDTKKKIDILLKAVGDTPIMKTKKWA 121
             D    P  T PE P      PGT    G       ++       P M+ + WA
Sbjct: 272 SVDPGRPPGATCPESP-----GPGTPHTLG-------VVEPGKSPPPTMEEEPWA 314


>gi|169170016 PREDICTED: hypothetical protein LOC442676 [Homo
           sapiens]
          Length = 679

 Score = 35.8 bits (81), Expect = 0.022
 Identities = 33/115 (28%), Positives = 44/115 (38%), Gaps = 19/115 (16%)

Query: 9   SLCNCVPLLRRLLCDAPWRKARPLHALSRYFRSRVSPSKMAEEPQSVLQLPTSIAAGGEG 68
           SLC CVPL   +LC  P    +P  A  R   S    S  +++P  +  +      GG G
Sbjct: 217 SLCGCVPL---VLCPLPDPSLQPHEA--RQPASHSVASNQSKQPAKLAAVAHERPPGGTG 271

Query: 69  LTDVS--PETTTPEPPSSAAVSPGTEEPAGDTKKKIDILLKAVGDTPIMKTKKWA 121
             D    P  T PE P      PGT    G       ++       P M+ + WA
Sbjct: 272 SVDPGRPPGATCPESP-----GPGTPHTLG-------VVEPGKSPPPTMEEEPWA 314


>gi|239508816 PREDICTED: hypothetical protein LOC442676 [Homo
           sapiens]
          Length = 679

 Score = 35.8 bits (81), Expect = 0.022
 Identities = 33/115 (28%), Positives = 44/115 (38%), Gaps = 19/115 (16%)

Query: 9   SLCNCVPLLRRLLCDAPWRKARPLHALSRYFRSRVSPSKMAEEPQSVLQLPTSIAAGGEG 68
           SLC CVPL   +LC  P    +P  A  R   S    S  +++P  +  +      GG G
Sbjct: 217 SLCGCVPL---VLCPLPDPSLQPHEA--RQPASHSVASNQSKQPAKLAAVAHERPPGGTG 271

Query: 69  LTDVS--PETTTPEPPSSAAVSPGTEEPAGDTKKKIDILLKAVGDTPIMKTKKWA 121
             D    P  T PE P      PGT    G       ++       P M+ + WA
Sbjct: 272 SVDPGRPPGATCPESP-----GPGTPHTLG-------VVEPGKSPPPTMEEEPWA 314


>gi|22027482 neuronal PAS domain protein 1 [Homo sapiens]
          Length = 590

 Score = 33.9 bits (76), Expect = 0.084
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 43  VSPSKMAEEPQSVLQLPTSIAAGGEGLTDVSPETTTPEPPSSAAVSPGTEEPAGDTKKK 101
           +S ++  + P    QLP S+A   E  +   PE T PEPP+    +   E  A  T+ K
Sbjct: 405 LSQAEGGQTPLDAFQLPASVAC--EEASSPGPEPTEPEPPTEGKQAAPAENEAPQTQGK 461


>gi|150417978 platelet glycoprotein Ib alpha polypeptide precursor
           [Homo sapiens]
          Length = 639

 Score = 33.1 bits (74), Expect = 0.14
 Identities = 23/72 (31%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 26  WRKARPLHALSRYFRSRVSPSKMAEEPQSVLQLPTSIAAGGEGLTDVSPETTTPEPPSSA 85
           W     LH  S  F S+   S     P      P    A      + +P  TTPEP S  
Sbjct: 359 WTPNFTLHMESITF-SKTPKSTTEPTPSPTTSEPVPEPAPNMTTLEPTPSPTTPEPTSEP 417

Query: 86  AVSPGTEEPAGD 97
           A SP T EP  +
Sbjct: 418 APSPTTPEPTSE 429



 Score = 32.3 bits (72), Expect = 0.24
 Identities = 16/36 (44%), Positives = 19/36 (52%)

Query: 59  PTSIAAGGEGLTDVSPETTTPEPPSSAAVSPGTEEP 94
           PT      E  ++ +P  TTPEP S  A SP T EP
Sbjct: 404 PTPSPTTPEPTSEPAPSPTTPEPTSEPAPSPTTPEP 439


>gi|38569423 ATP citrate lyase isoform 2 [Homo sapiens]
          Length = 1091

 Score = 32.0 bits (71), Expect = 0.32
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 4/79 (5%)

Query: 59  PTSIAAGGEGLTDVSPETTTPEPPSSAAVSPGTEEPAGDTKKKIDILLKAVGDTPIMKTK 118
           P + A     L + S  T+TP P  +A+ S    +     KK    + +    T   +  
Sbjct: 428 PPTAAHTANFLLNASGSTSTPAPSRTASFSESRADEVAPAKKAKPAMPQGKSTTLFSRHT 487

Query: 119 K---WAVERTRTIQGLIDF 134
           K   W ++ TR +QG++DF
Sbjct: 488 KAIVWGMQ-TRAVQGMLDF 505


>gi|31563518 microtubule-associated protein 1 light chain 3 alpha
           isoform b [Homo sapiens]
          Length = 125

 Score = 32.0 bits (71), Expect = 0.32
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 9/116 (7%)

Query: 81  PPSSAAVSPG-----TEEPAGDTKKKIDILL---KAVGDTPIMKTKKWAVERTRTIQGLI 132
           P   AAV P       ++       KI +++   K     P++   K+ V     +  L+
Sbjct: 9   PCGKAAVDPADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELV 68

Query: 133 DFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYEC-FGSDGKLVLHYCKSQAWG 187
             I++ L+L  ++  F+ VNQ    S    +  +YE     DG L + Y   + +G
Sbjct: 69  KIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 124


>gi|119943102 CREB binding protein isoform b [Homo sapiens]
          Length = 2404

 Score = 32.0 bits (71), Expect = 0.32
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 36   SRYFRSRVSPSKMAEEPQSVLQLPTSIAAGGEGLTDVSPETTTPEPPSSAAVSPGTEEPA 95
            ++  R R++       PQ  L  PTS   G       +P+T  P+PP+    SP +  PA
Sbjct: 1824 AQLMRRRMATMNTRNVPQQSLPSPTSAPPGTPTQQPSTPQT--PQPPAQPQPSPVSMSPA 1881

Query: 96   G 96
            G
Sbjct: 1882 G 1882


>gi|119943104 CREB binding protein isoform a [Homo sapiens]
          Length = 2442

 Score = 32.0 bits (71), Expect = 0.32
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 36   SRYFRSRVSPSKMAEEPQSVLQLPTSIAAGGEGLTDVSPETTTPEPPSSAAVSPGTEEPA 95
            ++  R R++       PQ  L  PTS   G       +P+T  P+PP+    SP +  PA
Sbjct: 1862 AQLMRRRMATMNTRNVPQQSLPSPTSAPPGTPTQQPSTPQT--PQPPAQPQPSPVSMSPA 1919

Query: 96   G 96
            G
Sbjct: 1920 G 1920


>gi|83776596 CaM kinase-like vesicle-associated [Homo sapiens]
          Length = 501

 Score = 31.6 bits (70), Expect = 0.42
 Identities = 21/72 (29%), Positives = 29/72 (40%)

Query: 24  APWRKARPLHALSRYFRSRVSPSKMAEEPQSVLQLPTSIAAGGEGLTDVSPETTTPEPPS 83
           A W+KA  +  L +  R+    S  A +  S     T  AAGG      S  T+ PE  +
Sbjct: 311 AKWKKAVRVTTLMKRLRAPEQSSTAAAQSASATDTATPGAAGGATAAAASGATSAPEGDA 370

Query: 84  SAAVSPGTEEPA 95
           + A       PA
Sbjct: 371 ARAAKSDNVAPA 382


>gi|50843820 sickle tail isoform 1 [Homo sapiens]
          Length = 1943

 Score = 31.6 bits (70), Expect = 0.42
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 19   RLLCDAPWRKARPLHALSRYFRSRVSPSKMA--EEPQSVLQLPTSIAAGGEGLTDVSPET 76
            + L D      R   A S +     SP  +   +E  + L+ PTSI +     +  +P+T
Sbjct: 1686 KALVDTSCSSNRDSVASSSHIAQEASPRPLLVPDEGPTALEPPTSIPSASRKGSSGAPQT 1745

Query: 77   TTPEPPSSAAVSPGTEEPAGDTKKKID 103
            +    P SA   PGT +  G   K  D
Sbjct: 1746 SRMPVPMSAKNRPGTLDKPGKQSKLQD 1772


>gi|239745132 PREDICTED: similar to Golgin subfamily A member 8-like
           protein 1 [Homo sapiens]
          Length = 602

 Score = 31.2 bits (69), Expect = 0.54
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 45  PSKMAEEP----QSVLQLPTSIAAGGEGLTDVSPETTTPEPPSSAAVSPGTEEPAGDTKK 100
           P  + EEP    ++ LQL   +    E L +V    T+ +    AA  PG   P G++  
Sbjct: 369 PQSVFEEPNNENKNALQLEQQVKELQEKLGEVKETETSAQKEPEAARGPGAPGPGGESSS 428

Query: 101 KIDILLKAVGDTPIMKTKK 119
            +D L +    + ++K K+
Sbjct: 429 FMDHLEEKADLSELVKKKE 447


>gi|83367077 mucin 16 [Homo sapiens]
          Length = 14507

 Score = 30.8 bits (68), Expect = 0.71
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 41   SRVSPSKMAEEPQSVLQLPTSI-AAGGEGLTDVSPETTTPEPPSSAAVSPGTEEPA 95
            S  SP  +   P  V  LPTS+     + L   SPE+ T  PP+ ++++   E PA
Sbjct: 5351 SSTSPQSIPSSPLPVTALPTSVLVTTTDVLGTTSPESVTSSPPNLSSIT--HERPA 5404


>gi|239750798 PREDICTED: similar to hect domain and RLD 2 [Homo
           sapiens]
          Length = 691

 Score = 30.8 bits (68), Expect = 0.71
 Identities = 19/73 (26%), Positives = 34/73 (46%)

Query: 47  KMAEEPQSVLQLPTSIAAGGEGLTDVSPETTTPEPPSSAAVSPGTEEPAGDTKKKIDILL 106
           ++  E +S LQL   +    E L +V    T+ +    AA  PG   P G++   +D L 
Sbjct: 487 ELNNENKSALQLEQQVKELQEKLGEVKDTETSAQKEPEAARGPGAPGPGGESSSFMDHLE 546

Query: 107 KAVGDTPIMKTKK 119
           +    + ++K K+
Sbjct: 547 EKADLSELVKKKE 559


>gi|21536357 TBP-associated factor 6 isoform delta [Homo sapiens]
          Length = 667

 Score = 30.8 bits (68), Expect = 0.71
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 11/78 (14%)

Query: 43  VSPSKMAEEPQSVLQLPTSIAAGGEGLTDVSPETTT-------PEPPSSAAVSPGTEEPA 95
           +S S  A   Q VL L TS  A G G T  SP TTT        +  S+A  +P +  P+
Sbjct: 531 MSSSSSAPSTQQVLSLSTS--APGSGSTTTSPVTTTVPSVQPIVKLVSTATTAPPSTAPS 588

Query: 96  --GDTKKKIDILLKAVGD 111
             G  +K I + L   G+
Sbjct: 589 GPGSVQKYIVVSLPPTGE 606


>gi|21536355 TBP-associated factor 6 isoform gamma [Homo sapiens]
          Length = 667

 Score = 30.8 bits (68), Expect = 0.71
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 11/78 (14%)

Query: 43  VSPSKMAEEPQSVLQLPTSIAAGGEGLTDVSPETTT-------PEPPSSAAVSPGTEEPA 95
           +S S  A   Q VL L TS  A G G T  SP TTT        +  S+A  +P +  P+
Sbjct: 531 MSSSSSAPSTQQVLSLSTS--APGSGSTTTSPVTTTVPSVQPIVKLVSTATTAPPSTAPS 588

Query: 96  --GDTKKKIDILLKAVGD 111
             G  +K I + L   G+
Sbjct: 589 GPGSVQKYIVVSLPPTGE 606


>gi|5032147 TBP-associated factor 6 isoform alpha [Homo sapiens]
          Length = 677

 Score = 30.8 bits (68), Expect = 0.71
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 11/78 (14%)

Query: 43  VSPSKMAEEPQSVLQLPTSIAAGGEGLTDVSPETTT-------PEPPSSAAVSPGTEEPA 95
           +S S  A   Q VL L TS  A G G T  SP TTT        +  S+A  +P +  P+
Sbjct: 541 MSSSSSAPSTQQVLSLSTS--APGSGSTTTSPVTTTVPSVQPIVKLVSTATTAPPSTAPS 598

Query: 96  --GDTKKKIDILLKAVGD 111
             G  +K I + L   G+
Sbjct: 599 GPGSVQKYIVVSLPPTGE 616


>gi|21536359 TBP-associated factor 6 isoform alpha [Homo sapiens]
          Length = 677

 Score = 30.8 bits (68), Expect = 0.71
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 11/78 (14%)

Query: 43  VSPSKMAEEPQSVLQLPTSIAAGGEGLTDVSPETTT-------PEPPSSAAVSPGTEEPA 95
           +S S  A   Q VL L TS  A G G T  SP TTT        +  S+A  +P +  P+
Sbjct: 541 MSSSSSAPSTQQVLSLSTS--APGSGSTTTSPVTTTVPSVQPIVKLVSTATTAPPSTAPS 598

Query: 96  --GDTKKKIDILLKAVGD 111
             G  +K I + L   G+
Sbjct: 599 GPGSVQKYIVVSLPPTGE 616


>gi|14210522 microtubule-associated protein 1 light chain 3 alpha
           isoform a [Homo sapiens]
          Length = 121

 Score = 30.8 bits (68), Expect = 0.71
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 101 KIDILL---KAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAP 157
           KI +++   K     P++   K+ V     +  L+  I++ L+L  ++  F+ VNQ    
Sbjct: 30  KIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMV 89

Query: 158 SPDQEVGTLYEC-FGSDGKLVLHYCKSQAWG 187
           S    +  +YE     DG L + Y   + +G
Sbjct: 90  SVSTPIADIYEQEKDEDGFLYMVYASQETFG 120


>gi|91208420 bassoon protein [Homo sapiens]
          Length = 3926

 Score = 30.8 bits (68), Expect = 0.71
 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 12/115 (10%)

Query: 28  KARPLHALSRYFRSRVSP-------SKMAEEPQSVLQLPTSIAAGGEGLTDVSPETTTPE 80
           KA PL   +    S+ SP       S+ ++ P SV +  T +    E +    PETT   
Sbjct: 571 KASPLSTKASPLPSKASPQAKPLRASEPSKTPSSVQEKKTRVPTKAEPMPKPPPETT--P 628

Query: 81  PPSSAAVSPGTE--EPAGDTKKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLID 133
            P++  V  G    EPA    K +    K  G+   +  K ++ + +R+ Q L D
Sbjct: 629 TPATPKVKSGVRRAEPATPVVKAVPEAPKG-GEAEDLVGKPYSQDASRSPQSLSD 682


>gi|116284392 mucin 2 precursor [Homo sapiens]
          Length = 5179

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 45   PSKMAEEPQSVLQLPTSIAAGGEGLTDVSPETTTPEPPSSAAVSP 89
            P+     P +    PT+  +     T   P TTTP PP++  ++P
Sbjct: 1466 PTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITP 1510



 Score = 29.6 bits (65), Expect = 1.6
 Identities = 14/45 (31%), Positives = 18/45 (40%)

Query: 45   PSKMAEEPQSVLQLPTSIAAGGEGLTDVSPETTTPEPPSSAAVSP 89
            P+     P S    P          T  SP TTTP PP++   +P
Sbjct: 1450 PTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTP 1494



 Score = 29.6 bits (65), Expect = 1.6
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 45   PSKMAEEPQSVLQLPTSIAAGGEGLTDVSPETTTP-EPPSSAAVSPGTEEPAGDT 98
            P+     P +    PT+        T  SP TTTP  PP+S    P T  P+  T
Sbjct: 1473 PTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPASTTTLPPTTTPSPPT 1527



 Score = 29.3 bits (64), Expect = 2.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 59   PTSIAAGGEGLTDVSPETTTPEPPSSAAVSPGT 91
            PT+  +     T   P TTTP PP++  ++P T
Sbjct: 1519 PTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPT 1551



 Score = 29.3 bits (64), Expect = 2.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 59   PTSIAAGGEGLTDVSPETTTPEPPSSAAVSPGT 91
            PT+  +     T   P TTTP PP++  ++P T
Sbjct: 1598 PTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPT 1630



 Score = 28.9 bits (63), Expect = 2.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 59   PTSIAAGGEGLTDVSPETTTPEPPSSAAVSPGT 91
            PT+  +     T   P TTTP PP++   SP T
Sbjct: 1558 PTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPT 1590



 Score = 27.7 bits (60), Expect = 6.0
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 59   PTSIAAGGEGLTDVSPETTTPEPPSSAAVSPGTEEPAGDT 98
            PT+  +     T   P TTTP PP++   SP T  P+  T
Sbjct: 1450 PTTTPSPPISTTTTPPPTTTPSPPTTTP-SPPTTTPSPPT 1488



 Score = 27.7 bits (60), Expect = 6.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 59   PTSIAAGGEGLTDVSPETTTPEPPSSAAVSP 89
            PT+  +     T   P TTTP PP++   SP
Sbjct: 1637 PTTTPSPPPTTTTTPPPTTTPSPPTTTTPSP 1667



 Score = 27.3 bits (59), Expect = 7.9
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 69   LTDVSPETTTPE-PPSSAAVSPGTEEPAGDT 98
            +T  SP TTTP  PP+S    P T  P+  T
Sbjct: 1396 ITTPSPPTTTPSPPPTSTTTLPPTTTPSPPT 1426



 Score = 27.3 bits (59), Expect = 7.9
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 52   PQSVLQLPTSIAAGGEGLTDVSPETTTP-EPPSSAAVSPGTEEPA 95
            P +    PT+        T  SP TTTP  PP+S    P T  P+
Sbjct: 1519 PTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPS 1563



 Score = 27.3 bits (59), Expect = 7.9
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 52   PQSVLQLPTSIAAGGEGLTDVSPETTTP-EPPSSAAVSPGTEEPA 95
            P +    PT+        T  SP TTTP  PP+S    P T  P+
Sbjct: 1598 PTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPS 1642


>gi|169208016 PREDICTED: similar to golgi autoantigen, golgin
           subfamily a, 8E isoform 1 [Homo sapiens]
          Length = 594

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 18/73 (24%), Positives = 34/73 (46%)

Query: 47  KMAEEPQSVLQLPTSIAAGGEGLTDVSPETTTPEPPSSAAVSPGTEEPAGDTKKKIDILL 106
           ++  E +S LQL   +    E L +V    T+ +    AA  PG   P G++   +D L 
Sbjct: 367 ELNNENKSTLQLEQQVKELQEKLGEVKETETSAQKEPEAARGPGAPGPGGESSSFMDHLK 426

Query: 107 KAVGDTPIMKTKK 119
           +    + ++K ++
Sbjct: 427 EKADLSELLKKQE 439


>gi|31982906 cingulin-like 1 [Homo sapiens]
          Length = 1302

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 16/51 (31%), Positives = 24/51 (47%)

Query: 67  EGLTDVSPETTTPEPPSSAAVSPGTEEPAGDTKKKIDILLKAVGDTPIMKT 117
           EG+ +  P T  P+P +S   SP  E+PA      I +    V + P  +T
Sbjct: 181 EGINNKKPWTCFPKPSNSQPTSPSLEDPAKSGVTAIRLCSSVVIEDPKKQT 231


>gi|169208042 PREDICTED: similar to Golgin subfamily A member 8-like
           protein 2 isoform 2 [Homo sapiens]
          Length = 595

 Score = 29.6 bits (65), Expect = 1.6
 Identities = 18/73 (24%), Positives = 34/73 (46%)

Query: 47  KMAEEPQSVLQLPTSIAAGGEGLTDVSPETTTPEPPSSAAVSPGTEEPAGDTKKKIDILL 106
           ++  E +S LQL   +    E L +V    T+ +    AA  PG   P G++   +D L 
Sbjct: 368 ELNNENKSTLQLEQQVKELQEKLGEVKETETSAQKEPEAARGPGAPGPGGESSSFMDHLK 427

Query: 107 KAVGDTPIMKTKK 119
           +    + ++K ++
Sbjct: 428 EKADLSELVKKQE 440


>gi|169208038 PREDICTED: similar to Golgin subfamily A member 8-like
           protein 2 isoform 2 [Homo sapiens]
          Length = 595

 Score = 29.6 bits (65), Expect = 1.6
 Identities = 18/73 (24%), Positives = 34/73 (46%)

Query: 47  KMAEEPQSVLQLPTSIAAGGEGLTDVSPETTTPEPPSSAAVSPGTEEPAGDTKKKIDILL 106
           ++  E +S LQL   +    E L +V    T+ +    AA  PG   P G++   +D L 
Sbjct: 368 ELNNENKSTLQLEQQVKELQEKLGEVKETETSAQKEPEAARGPGAPGPGGESSSFMDHLK 427

Query: 107 KAVGDTPIMKTKK 119
           +    + ++K ++
Sbjct: 428 EKADLSELVKKQE 440


>gi|169208036 PREDICTED: similar to Golgin subfamily A member 8-like
           protein 1 isoform 2 [Homo sapiens]
          Length = 601

 Score = 29.6 bits (65), Expect = 1.6
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 45  PSKMAEEP----QSVLQLPTSIAAGGEGLTDVSPETTTPEPPSSAAVSPGTEEPAGDTKK 100
           P  + EEP    ++ LQL   +    E L +V    T+ +    AA  PG   P G++  
Sbjct: 369 PQSVFEEPNNENKNALQLEQQVKELQEKLGEVKETETSAQKEPEAARGPGAPGPGGESSS 428

Query: 101 KIDILLKAVGDTPIMK 116
            +D L +    + ++K
Sbjct: 429 FMDHLKEKADLSELVK 444


>gi|169208018 PREDICTED: similar to Golgin subfamily A member 8-like
           protein 2 isoform 3 [Homo sapiens]
          Length = 595

 Score = 29.6 bits (65), Expect = 1.6
 Identities = 18/73 (24%), Positives = 34/73 (46%)

Query: 47  KMAEEPQSVLQLPTSIAAGGEGLTDVSPETTTPEPPSSAAVSPGTEEPAGDTKKKIDILL 106
           ++  E +S LQL   +    E L +V    T+ +    AA  PG   P G++   +D L 
Sbjct: 368 ELNNENKSTLQLEQQVKELQEKLGEVKETETSAQKEPEAARGPGAPGPGGESSSFMDHLK 427

Query: 107 KAVGDTPIMKTKK 119
           +    + ++K ++
Sbjct: 428 EKADLSELVKKQE 440


>gi|169208014 PREDICTED: Golgin subfamily A member 8-like protein 3
           isoform 2 [Homo sapiens]
          Length = 602

 Score = 29.6 bits (65), Expect = 1.6
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 45  PSKMAEEP----QSVLQLPTSIAAGGEGLTDVSPETTTPEPPSSAAVSPGTEEPAGDTKK 100
           P  + +EP    ++ LQL   +    E L +V    T+ +    AA  PG   P G++  
Sbjct: 369 PQSVFKEPNNENKNALQLEQQVKELQEKLGEVKETETSAQKEPEAARGPGAPGPGGESSS 428

Query: 101 KIDILLKAVGDTPIMKTKK 119
            +D L +    + ++K K+
Sbjct: 429 FMDHLEEKADLSELVKKKE 447


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.132    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,116,059
Number of Sequences: 37866
Number of extensions: 387305
Number of successful extensions: 2498
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 2344
Number of HSP's gapped (non-prelim): 203
length of query: 187
length of database: 18,247,518
effective HSP length: 96
effective length of query: 91
effective length of database: 14,612,382
effective search space: 1329726762
effective search space used: 1329726762
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.