Guide to the Human Genome
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Name: SATB2 Sequence: fasta or formatted (733aa) NCBI GI: 38016202
Description:

SATB homeobox 2

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         57           2
 C cysteine            1.2          9           1
 D aspartate           4.1         30           1
 E glutamate           8.6         63           3
 F phenylalanine       1.8         13           2
 G glycine             3.3         24           2
 H histidine           3.4         25           3
 I isoleucine          4.4         32           2
 K lysine              5.5         40           2
 L leucine             9.4         69           2
 M methionine          2.2         16           1
 N asparagine          4.6         34           1
 P proline             7.6         56           6
 Q glutamine           7.2         53           2
 R arginine            6.3         46           2
 S serine              9.1         67           3
 T threonine           3.5         26           2
 V valine              6.8         50           2
 W tryptophan          0.8          6           1
 Y tyrosine            2.3         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SATB homeobox 2 
SATB1                 0.579   special AT-rich sequence binding protein 1 
SATB1                 0.579   special AT-rich sequence binding protein 1 
ZFHX3                 0.016   AT-binding transcription factor 1 
ZFHX4                 0.015   zinc finger homeodomain 4 
ONECUT2               0.015   one cut domain, family member 2 
CUX1                  0.013   cut-like homeobox 1 isoform a 
ONECUT1               0.013   one cut homeobox 1 
HTT                   0.013   huntingtin 
ONECUT3               0.013   one cut homeobox 3 
CUX2                  0.012   cut-like 2 
BARHL2                0.011   BarH-like homeobox 2 
POU6F2                0.011   POU domain, class 6, transcription factor 2 
ZFHX2                 0.011   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.011   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.011   PREDICTED: zinc finger homeobox 2 
BRD4                  0.010   bromodomain-containing protein 4 isoform long 
FUSSEL18              0.010   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.010   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.010   PREDICTED: functional smad suppressing element 18 [...
ISX                   0.010   intestine-specific homeobox 
ESX1                  0.010   extraembryonic, spermatogenesis, homeobox 1-like [Ho...
TTN                   0.009   titin isoform N2-A 
BAZ2B                 0.008   bromodomain adjacent to zinc finger domain, 2B [Homo...
GAPDHS                0.008   glyceraldehyde-3-phosphate dehydrogenase, spermatogen...
USP51                 0.008   ubiquitin specific protease 51 
PHOX2A                0.008   paired-like homeobox 2a 
CBLL1                 0.008   Cas-Br-M (murine) ecotropic retroviral transforming...
SETD1B                0.008   SET domain containing 1B 
ZBTB7B                0.007   zinc finger and BTB domain containing 7B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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