Guide to the Human Genome
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Name: SATB1 Sequence: fasta or formatted (763aa) NCBI GI: 4506791
Description:

special AT-rich sequence binding protein 1

Referenced in:

Homeobox and Related Proteins

Other entries for this name:
alt mRNA [763aa] special AT-rich sequence binding protein 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         53           2
 C cysteine            0.8          6           1
 D aspartate           4.2         32           1
 E glutamate           7.6         58           3
 F phenylalanine       2.0         15           2
 G glycine             4.1         31           1
 H histidine           2.9         22           3
 I isoleucine          3.8         29           2
 K lysine              5.8         44           2
 L leucine            10.1         77           2
 M methionine          2.6         20           2
 N asparagine          5.5         42           2
 P proline             7.6         58           4
 Q glutamine           9.8         75          15
 R arginine            4.6         35           2
 S serine              7.9         60           2
 T threonine           4.6         35           2
 V valine              5.9         45           2
 W tryptophan          0.9          7           1
 Y tyrosine            2.5         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   special AT-rich sequence binding protein 1 
SATB1                 1.000   special AT-rich sequence binding protein 1 
SATB2                 0.554   SATB homeobox 2 
HTT                   0.021   huntingtin 
TNRC6A                0.020   trinucleotide repeat containing 6A 
MED12                 0.020   mediator complex subunit 12 
MEF2A                 0.019   myocyte enhancer factor 2A isoform 4 
MEF2A                 0.019   myocyte enhancer factor 2A isoform 3 
MEF2A                 0.019   myocyte enhancer factor 2A isoform 2 
MEF2A                 0.019   myocyte enhancer factor 2A isoform 1 
KCNN3                 0.019   small conductance calcium-activated potassium chann...
ESX1                  0.019   extraembryonic, spermatogenesis, homeobox 1-like [Ho...
FOXP2                 0.018   forkhead box P2 isoform I 
FOXP2                 0.018   forkhead box P2 isoform III 
FOXP2                 0.018   forkhead box P2 isoform II 
MAML2                 0.017   mastermind-like 2 
ZFHX4                 0.017   zinc finger homeodomain 4 
ATXN2                 0.017   ataxin 2 
SMARCA2               0.017   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.017   SWI/SNF-related matrix-associated actin-dependent re...
CHERP                 0.017   calcium homeostasis endoplasmic reticulum protein [...
POU6F2                0.017   POU domain, class 6, transcription factor 2 
C14orf43              0.016   hypothetical protein LOC91748 
C14orf43              0.016   hypothetical protein LOC91748 
MAML3                 0.016   mastermind-like 3 
TBP                   0.015   TATA box binding protein 
NCOA6                 0.015   nuclear receptor coactivator 6 
NCOA3                 0.015   nuclear receptor coactivator 3 isoform a 
NCOA3                 0.015   nuclear receptor coactivator 3 isoform b 
MED15                 0.015   mediator complex subunit 15 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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