Guide to the Human Genome
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Name: AP4E1 Sequence: fasta or formatted (1137aa) NCBI GI: 37675283
Description:

adaptor-related protein complex 4, epsilon 1 subunit

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         70           3
 C cysteine            1.8         21           2
 D aspartate           4.2         48           2
 E glutamate           7.9         90           3
 F phenylalanine       3.7         42           1
 G glycine             4.6         52           3
 H histidine           2.8         32           1
 I isoleucine          5.0         57           2
 K lysine              7.1         81           2
 L leucine            13.6        155           5
 M methionine          2.6         29           2
 N asparagine          3.7         42           3
 P proline             3.8         43           2
 Q glutamine           4.7         53           2
 R arginine            2.6         29           2
 S serine              9.8        111           3
 T threonine           5.4         61           3
 V valine              6.6         75           2
 W tryptophan          0.8          9           1
 Y tyrosine            3.3         37           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   adaptor-related protein complex 4, epsilon 1 subunit... 
AP1G1                 0.096   adaptor-related protein complex 1, gamma 1 subunit i...
AP1G1                 0.095   adaptor-related protein complex 1, gamma 1 subunit i...
AP1G2                 0.086   adaptor-related protein complex 1, gamma 2 subunit [H...
AP2A1                 0.065   adaptor-related protein complex 2, alpha 1 subunit i...
AP2A1                 0.065   adaptor-related protein complex 2, alpha 1 subunit i...
AP3D1                 0.063   adaptor-related protein complex 3, delta 1 subunit ...
AP2A2                 0.063   adaptor-related protein complex 2, alpha 2 subunit [...
AP3D1                 0.024   adaptor-related protein complex 3, delta 1 subunit ...
AP1B1                 0.019   adaptor-related protein complex 1 beta 1 subunit iso...
AP1B1                 0.019   adaptor-related protein complex 1 beta 1 subunit iso...
COPB1                 0.016   coatomer protein complex, subunit beta 1 
COPB1                 0.016   coatomer protein complex, subunit beta 1 
COPB1                 0.016   coatomer protein complex, subunit beta 1 
AP2B1                 0.016   adaptor-related protein complex 2, beta 1 subunit is...
AP2B1                 0.016   adaptor-related protein complex 2, beta 1 subunit iso...
AP3B1                 0.011   adaptor-related protein complex 3, beta 1 subunit [H...
COPG2                 0.010   coatomer protein complex, subunit gamma 2 
AP3B2                 0.009   adaptor-related protein complex 3, beta 2 subunit [H...
COPG                  0.008   coatomer protein complex, subunit gamma 1 
CLMN                  0.006   calmin 
SUFU                  0.006   suppressor of fused 
CEP350                0.005   centrosome-associated protein 350 
MUC12                 0.005   PREDICTED: mucin 12 
MUC12                 0.005   PREDICTED: mucin 12 
MUC12                 0.005   PREDICTED: mucin 12 
DDX27                 0.005   DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 
TNPO1                 0.004   transportin 1 isoform 2 
TNPO1                 0.004   transportin 1 isoform 1 
NOP58                 0.004   NOP58 ribonucleoprotein homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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