Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: AP1B1 Sequence: fasta or formatted (942aa) NCBI GI: 22027653
Description:

adaptor-related protein complex 1 beta 1 subunit isoform b

Referenced in:

ER, Golgi, and the Secretory Pathway
Small RNAs in RNA Processing

Other entries for this name:
alt prot [949aa] adaptor-related protein complex 1 beta 1 subunit isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         81           2
 C cysteine            1.7         16           1
 D aspartate           6.1         57           2
 E glutamate           6.8         64           2
 F phenylalanine       2.9         27           2
 G glycine             4.4         41           3
 H histidine           1.1         10           1
 I isoleucine          5.4         51           1
 K lysine              6.6         62           3
 L leucine            12.5        118           2
 M methionine          2.5         24           1
 N asparagine          4.6         43           2
 P proline             5.8         55           2
 Q glutamine           4.2         40           2
 R arginine            3.2         30           1
 S serine              6.6         62           2
 T threonine           5.3         50           3
 V valine              8.3         78           2
 W tryptophan          0.6          6           1
 Y tyrosine            2.9         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   adaptor-related protein complex 1 beta 1 subunit iso... 
AP1B1                 0.996   adaptor-related protein complex 1 beta 1 subunit iso...
AP2B1                 0.846   adaptor-related protein complex 2, beta 1 subunit iso...
AP2B1                 0.845   adaptor-related protein complex 2, beta 1 subunit is...
AP4B1                 0.149   adaptor-related protein complex 4, beta 1 subunit [...
AP3B2                 0.139   adaptor-related protein complex 3, beta 2 subunit [H...
AP3B1                 0.138   adaptor-related protein complex 3, beta 1 subunit [H...
AP2A1                 0.040   adaptor-related protein complex 2, alpha 1 subunit i...
AP2A2                 0.039   adaptor-related protein complex 2, alpha 2 subunit [...
AP2A1                 0.039   adaptor-related protein complex 2, alpha 1 subunit i...
AP1G1                 0.038   adaptor-related protein complex 1, gamma 1 subunit i...
AP3D1                 0.037   adaptor-related protein complex 3, delta 1 subunit ...
AP1G1                 0.037   adaptor-related protein complex 1, gamma 1 subunit i...
COPB1                 0.033   coatomer protein complex, subunit beta 1 
COPB1                 0.033   coatomer protein complex, subunit beta 1 
COPB1                 0.033   coatomer protein complex, subunit beta 1 
COPG                  0.024   coatomer protein complex, subunit gamma 1 
AP4E1                 0.023   adaptor-related protein complex 4, epsilon 1 subunit...
COPG2                 0.023   coatomer protein complex, subunit gamma 2 
AP1G2                 0.018   adaptor-related protein complex 1, gamma 2 subunit [H...
AP3D1                 0.015   adaptor-related protein complex 3, delta 1 subunit ...
TSC22D2               0.009   TSC22 domain family, member 2 
SHANK1                0.007   SH3 and multiple ankyrin repeat domains 1 
SPAG6                 0.007   sperm associated antigen 6 isoform 1 
TPR                   0.006   nuclear pore complex-associated protein TPR 
NCAPD3                0.006   non-SMC condensin II complex, subunit D3 
MMP9                  0.005   matrix metalloproteinase 9 preproprotein 
SPAG6                 0.005   sperm associated antigen 6 isoform 2 
TRIM7                 0.005   tripartite motif-containing 7 isoform 1 
RPTOR                 0.005   raptor isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press