COPB1 36014

Name: COPB1	Sequence: fasta or formatted (953aa)		NCBI GI: 7705369
Description: coatomer protein complex, subunit beta 1		Referenced in: ER, Golgi, and the Secretory Pathway
Other entries for this name: alt mRNA [953aa] coatomer protein complex, subunit beta 1 alt mRNA [953aa] coatomer protein complex, subunit beta 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.9 75 4 C cysteine 2.1 20 1 D aspartate 6.1 58 3 E glutamate 7.6 72 3 F phenylalanine 2.9 28 2 G glycine 3.0 29 1 H histidine 2.3 22 1 I isoleucine 7.0 67 2 K lysine 7.2 69 3 L leucine 12.3 117 3 M methionine 2.9 28 2 N asparagine 4.6 44 2 P proline 4.1 39 2 Q glutamine 3.6 34 1 R arginine 4.4 42 2 S serine 6.4 61 3 T threonine 5.2 50 2 V valine 7.5 71 2 W tryptophan 0.4 4 1 Y tyrosine 2.4 23 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 coatomer protein complex, subunit beta 1 COPB1 1.000 coatomer protein complex, subunit beta 1 COPB1 1.000 coatomer protein complex, subunit beta 1 AP1B1 0.033 adaptor-related protein complex 1 beta 1 subunit iso... AP1B1 0.033 adaptor-related protein complex 1 beta 1 subunit iso... AP3D1 0.032 adaptor-related protein complex 3, delta 1 subunit ... AP2B1 0.029 adaptor-related protein complex 2, beta 1 subunit is... AP2B1 0.029 adaptor-related protein complex 2, beta 1 subunit iso... AP3B2 0.024 adaptor-related protein complex 3, beta 2 subunit [H... AP3B1 0.023 adaptor-related protein complex 3, beta 1 subunit [H... AP4E1 0.019 adaptor-related protein complex 4, epsilon 1 subunit... AP1G1 0.016 adaptor-related protein complex 1, gamma 1 subunit i... AP1G1 0.016 adaptor-related protein complex 1, gamma 1 subunit i... AP1G2 0.014 adaptor-related protein complex 1, gamma 2 subunit [H... AP4B1 0.010 adaptor-related protein complex 4, beta 1 subunit [... COPG2 0.007 coatomer protein complex, subunit gamma 2 COPG 0.006 coatomer protein complex, subunit gamma 1 DNAH7 0.005 dynein, axonemal, heavy chain 7 C1orf125 0.005 hypothetical protein LOC126859 isoform 1 MAP1A 0.005 microtubule-associated protein 1A C14orf145 0.005 hypothetical protein LOC145508 LOC100288809 0.004 PREDICTED: hypothetical protein XP_002343208 TSHZ3 0.004 zinc finger protein 537 FILIP1L 0.004 filamin A interacting protein 1-like isoform 3 [Hom... FILIP1L 0.004 filamin A interacting protein 1-like isoform 2 [Hom... FILIP1L 0.004 filamin A interacting protein 1-like isoform 1 [Hom... CENPE 0.004 centromere protein E CLMN 0.004 calmin VAV2 0.004 vav 2 guanine nucleotide exchange factor isoform 1 ... VAV2 0.004 vav 2 guanine nucleotide exchange factor isoform 2 [... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.