Guide to the Human Genome
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Name: COPG2 Sequence: fasta or formatted (871aa) NCBI GI: 109134349
Description:

coatomer protein complex, subunit gamma 2

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         69           3
 C cysteine            2.3         20           1
 D aspartate           5.3         46           3
 E glutamate           7.7         67           2
 F phenylalanine       4.4         38           2
 G glycine             3.6         31           2
 H histidine           2.2         19           1
 I isoleucine          6.0         52           2
 K lysine              5.9         51           2
 L leucine            10.1         88           2
 M methionine          3.3         29           2
 N asparagine          3.9         34           2
 P proline             4.5         39           1
 Q glutamine           3.7         32           2
 R arginine            4.8         42           2
 S serine              7.8         68           3
 T threonine           6.3         55           2
 V valine              7.5         65           4
 W tryptophan          0.2          2           1
 Y tyrosine            2.8         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coatomer protein complex, subunit gamma 2 
COPG                  0.828   coatomer protein complex, subunit gamma 1 
AP4B1                 0.025   adaptor-related protein complex 4, beta 1 subunit [...
AP1B1                 0.025   adaptor-related protein complex 1 beta 1 subunit iso...
AP1B1                 0.025   adaptor-related protein complex 1 beta 1 subunit iso...
AP2B1                 0.024   adaptor-related protein complex 2, beta 1 subunit is...
AP2B1                 0.024   adaptor-related protein complex 2, beta 1 subunit iso...
AP1G1                 0.021   adaptor-related protein complex 1, gamma 1 subunit i...
AP1G1                 0.019   adaptor-related protein complex 1, gamma 1 subunit i...
AP4E1                 0.013   adaptor-related protein complex 4, epsilon 1 subunit...
AP1G2                 0.013   adaptor-related protein complex 1, gamma 2 subunit [H...
AP3B1                 0.008   adaptor-related protein complex 3, beta 1 subunit [H...
COPB1                 0.007   coatomer protein complex, subunit beta 1 
COPB1                 0.007   coatomer protein complex, subunit beta 1 
COPB1                 0.007   coatomer protein complex, subunit beta 1 
AP3D1                 0.007   adaptor-related protein complex 3, delta 1 subunit ...
CAND2                 0.007   TBP-interacting protein isoform 1 
CAND2                 0.007   TBP-interacting protein isoform 2 
ZYG11A                0.005   PREDICTED: zyg-11 homolog A (C. elegans) 
ZYG11A                0.005   PREDICTED: zyg-11 homolog A (C. elegans) 
ZYG11A                0.005   PREDICTED: zyg-11 homolog A 
ZYG11A                0.005   zyg-11 homolog A 
AP3D1                 0.004   adaptor-related protein complex 3, delta 1 subunit ...
LOC100292655          0.004   PREDICTED: similar to armadillo repeat containing, ...
CDON                  0.004   surface glycoprotein, Ig superfamily member 
CASP10                0.003   caspase 10 isoform d preproprotein 
CASP10                0.003   caspase 10 isoform b preproprotein 
CASP10                0.003   caspase 10 isoform a preproprotein 
EIF4G2                0.003   eukaryotic translation initiation factor 4 gamma, 2...
EIF4G2                0.003   eukaryotic translation initiation factor 4 gamma, 2 i...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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