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Search of human proteins with 34101288
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|34101288 cleavage and polyadenylation specific factor 2
[Homo sapiens]
(782 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34101288 cleavage and polyadenylation specific factor 2 [Homo... 1568 0.0
gi|7706427 cleavage and polyadenylation specific factor 3, 73kDa... 140 5e-33
gi|33300633 cleavage and polyadenylation specific factor 3-like ... 134 3e-31
gi|223555970 integrator complex subunit 9 isoform 2 [Homo sapiens] 65 2e-10
gi|223555968 integrator complex subunit 9 isoform 1 [Homo sapiens] 65 2e-10
gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens] 42 0.003
gi|90819229 cutaneous T-cell lymphoma-associated antigen 1 isofo... 39 0.024
gi|42740899 CTAGE family, member 5 isoform 3 [Homo sapiens] 38 0.041
gi|42740897 CTAGE family, member 5 isoform 1 [Homo sapiens] 38 0.041
gi|42740901 CTAGE family, member 5 isoform 4 [Homo sapiens] 38 0.041
gi|42740905 CTAGE family, member 5 isoform 2 [Homo sapiens] 38 0.041
gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1 [... 37 0.071
gi|71143141 cyclic nucleotide gated channel alpha 1 isoform 2 [H... 37 0.071
gi|21361639 DIPB protein [Homo sapiens] 37 0.071
gi|145580615 KRI1 homolog [Homo sapiens] 37 0.071
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 37 0.071
gi|168229156 NFKB activating protein [Homo sapiens] 37 0.092
gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo... 37 0.092
gi|71061468 centromere protein E [Homo sapiens] 37 0.092
gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens] 36 0.12
gi|224593278 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sap... 36 0.12
gi|154146191 heat shock 90kDa protein 1, alpha isoform 2 [Homo s... 36 0.16
gi|153792590 heat shock 90kDa protein 1, alpha isoform 1 [Homo s... 36 0.16
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 36 0.16
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 36 0.16
gi|56676397 ankyrin repeat domain 11 [Homo sapiens] 36 0.16
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 36 0.16
gi|4757900 calreticulin precursor [Homo sapiens] 35 0.21
gi|148839339 nexilin (F actin binding protein) [Homo sapiens] 35 0.21
gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens] 35 0.21
>gi|34101288 cleavage and polyadenylation specific factor 2 [Homo
sapiens]
Length = 782
Score = 1568 bits (4059), Expect = 0.0
Identities = 782/782 (100%), Positives = 782/782 (100%)
Query: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 301 NPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTT 360
NPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTT
Sbjct: 301 NPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTT 360
Query: 361 PGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSS 420
PGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSS
Sbjct: 361 PGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSS 420
Query: 421 DESDIEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEII 480
DESDIEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEII
Sbjct: 421 DESDIEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEII 480
Query: 481 KPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDVPTKCISTTESIEIKARVTYIDY 540
KPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDVPTKCISTTESIEIKARVTYIDY
Sbjct: 481 KPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDVPTKCISTTESIEIKARVTYIDY 540
Query: 541 EGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDIKVYMPKLHETVDAT 600
EGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDIKVYMPKLHETVDAT
Sbjct: 541 EGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDIKVYMPKLHETVDAT 600
Query: 601 SETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDS 660
SETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDS
Sbjct: 601 SETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDS 660
Query: 661 EMQVEAPSDSSVIAQQKAMKSLFGDDEKETGEESEIIPTLEPLPPHEVPGHQSVFMNEPR 720
EMQVEAPSDSSVIAQQKAMKSLFGDDEKETGEESEIIPTLEPLPPHEVPGHQSVFMNEPR
Sbjct: 661 EMQVEAPSDSSVIAQQKAMKSLFGDDEKETGEESEIIPTLEPLPPHEVPGHQSVFMNEPR 720
Query: 721 LSDFKQVLLREGIQAEFVGGVLVCNNQVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYA 780
LSDFKQVLLREGIQAEFVGGVLVCNNQVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYA
Sbjct: 721 LSDFKQVLLREGIQAEFVGGVLVCNNQVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYA 780
Query: 781 IV 782
IV
Sbjct: 781 IV 782
>gi|7706427 cleavage and polyadenylation specific factor 3, 73kDa
[Homo sapiens]
Length = 684
Score = 140 bits (353), Expect = 5e-33
Identities = 99/375 (26%), Positives = 180/375 (48%), Gaps = 22/375 (5%)
Query: 10 LSGVQEESALCYLLQVDEFRFLLDCG-------WDEHFSMDIIDSLRKHVHQIDAVLLSH 62
L QE C +L+ + +LDCG D +D+ID +ID +L+SH
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 63 PDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVDAA 122
H GALP+ + K + T + + + D + + + D L+T D++ +
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEES 131
Query: 123 FDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKREI 182
DKI+ + F ++ + G + AGH++G ++ I G + ++Y DF+ + +
Sbjct: 132 MDKIETINFHEVKEVAG----IKFWCYHAGHVLGAAMFMIEIAGVK-LLYTGDFSRQEDR 186
Query: 183 HLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTAGR 242
HL + + +P +LI +S T++ +R++R+ + V + + G LI V GR
Sbjct: 187 HLMAAEIPNI-KPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 243 VLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRNNP 302
EL +LD+ W+ L + ++++ + ++ V M+DK+ + + NNP
Sbjct: 246 AQELLLILDEYWQNHPE-LHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRK--QININNP 302
Query: 303 FQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTTPG 362
F F+H+S + + P VV+AS ++ G SR+LF WC D +N +I+ G
Sbjct: 303 FVFKHISNLKSMDHFDDI-GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEG 361
Query: 363 TLARFLIDNPSEKIT 377
TLA+ ++ P E T
Sbjct: 362 TLAKHIMSEPEEITT 376
Score = 33.1 bits (74), Expect = 1.0
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 527 ESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPP-EASQDLAECCRAFGGKD 585
+ + +K V YI + +D + I +KP +I+VHG E ++ A R + D
Sbjct: 380 QKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDND 439
Query: 586 ---IKVYMPKLHETV 597
I+V+ P+ E V
Sbjct: 440 EVHIEVHNPRNTEAV 454
>gi|33300633 cleavage and polyadenylation specific factor 3-like
[Homo sapiens]
Length = 600
Score = 134 bits (337), Expect = 3e-31
Identities = 110/401 (27%), Positives = 181/401 (45%), Gaps = 26/401 (6%)
Query: 5 IKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMD-------IIDSLRKHVHQIDA 57
I++T L Q+ C L+ + +LDCG F+ D I + +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTE-DFTLFTL 116
V++SH H GALPY +G + IY T P + + + D + + + + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDF 176
+ K+ + Q V + + L I AGH++G +++I K G E +VY D+
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDE---LEIKAYYAGHVLGAAMFQI-KVGSESVVYTGDY 179
Query: 177 NHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIA 236
N + HL ++ RP+LLIT+S AT ++ ++ R+ L V ET+ G VLI
Sbjct: 180 NMTPDRHLGAAWIDKC-RPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIP 238
Query: 237 VDTAGRVLELAQLLDQIWRTKDAGLGVY-SLALLNNVSYNVVEFSKSQVEWMSDKLMRCF 295
V GR EL LL+ W + + +Y S L ++ + K + W + K+ + F
Sbjct: 239 VFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANH----YYKLFIPWTNQKIRKTF 294
Query: 296 EDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIIL 355
+ N F+F+H+ A P P VV A+ L G S +F +W + KN +I+
Sbjct: 295 VQR--NMFEFKHIKAFD--RAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
Query: 356 TYRTTPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYL 396
GT+ ++ ++E+ R LE K EY+
Sbjct: 351 PGYCVQGTVGHKILSGQ----RKLEMEGRQVLEVKMQVEYM 387
Score = 37.7 bits (86), Expect = 0.041
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 529 IEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDIKV 588
+E+K +V Y+ + +D I +++ Q +P +++VHG + + L + + +
Sbjct: 378 LEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQ--KIEQELRVNC 435
Query: 589 YMPKLHETV 597
YMP ETV
Sbjct: 436 YMPANGETV 444
>gi|223555970 integrator complex subunit 9 isoform 2 [Homo sapiens]
Length = 637
Score = 65.5 bits (158), Expect = 2e-10
Identities = 94/425 (22%), Positives = 169/425 (39%), Gaps = 96/425 (22%)
Query: 5 IKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIID---------------SLR 49
+KL LSG + C +L+ +LDCG D +++ + SL+
Sbjct: 1 MKLYCLSG--HPTLPCNVLKFKSTTIMLDCGLDMTSTLNFLPLPLVQSPRLSNLPGWSLK 58
Query: 50 K-----------HVHQIDAVLLSHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFM 98
+ +D +L+S+ + ALPY G +YAT P ++G++ M
Sbjct: 59 DGNAFLDKTELIDLSTVDVILISNYHCMM--ALPYITEHTGFTGTVYATEPTVQIGRLLM 116
Query: 99 YDLYQ-----------SRHNTEDFT------------------LFTLDDVDAAFDKIQQL 129
+L S +D +T+ +V++A KIQ +
Sbjct: 117 EELVNFIERVPKAQSASLWKNKDIQRLLPSPLKDAVEVSTWRRCYTMQEVNSALSKIQLV 176
Query: 130 KFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSL 189
+SQ + L G + +TPL +G+ +G + W I++ E++ Y ++G SL
Sbjct: 177 GYSQKIELFG---AVQVTPLSSGYALGSSNW-IIQSHYEKVSY-----------VSGSSL 221
Query: 190 -----EMLSRPSLLITDSFNATYVQPRRKQRDE----QLLTNVLETLRGDGNVLIAVDTA 240
+ + + SL +D T + + + +N+ T+R GNVL+ +
Sbjct: 222 LTTHPQPMDQASLKNSDVLVLTGLTQIPTANPDGMVGEFCSNLALTVRNGGNVLVPCYPS 281
Query: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWM-SDKLMRCFEDKR 299
G + +L + L Q AGL L ++ V+ + +EFS+ EW+ +K + + +
Sbjct: 282 GVIYDLLECLYQY--IDSAGLSSVPLYFISPVANSSLEFSQIFAEWLCHNKQSKVYLPEP 339
Query: 300 NNPF-------QFRHLSLCHGLSDLAR-VPSPKVVLASQPDLECGFSRDLFIQWCQDPKN 351
P + +H HG D + P VV P L G W + N
Sbjct: 340 PFPHAELIQTNKLKHYPSIHG--DFSNDFRQPCVVFTGHPSLRFGDVVHFMELWGKSSLN 397
Query: 352 SIILT 356
++I T
Sbjct: 398 TVIFT 402
>gi|223555968 integrator complex subunit 9 isoform 1 [Homo sapiens]
Length = 658
Score = 65.1 bits (157), Expect = 2e-10
Identities = 80/349 (22%), Positives = 144/349 (41%), Gaps = 68/349 (19%)
Query: 55 IDAVLLSHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQ----------- 103
+D +L+S+ + ALPY G +YAT P ++G++ M +L
Sbjct: 96 VDVILISNYHCMM--ALPYITEHTGFTGTVYATEPTVQIGRLLMEELVNFIERVPKAQSA 153
Query: 104 SRHNTEDFT------------------LFTLDDVDAAFDKIQQLKFSQIVNLKGKGHGLS 145
S +D +T+ +V++A KIQ + +SQ + L G +
Sbjct: 154 SLWKNKDIQRLLPSPLKDAVEVSTWRRCYTMQEVNSALSKIQLVGYSQKIELFG---AVQ 210
Query: 146 ITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSL-----EMLSRPSLLIT 200
+TPL +G+ +G + W I++ E++ Y ++G SL + + + SL +
Sbjct: 211 VTPLSSGYALGSSNW-IIQSHYEKVSY-----------VSGSSLLTTHPQPMDQASLKNS 258
Query: 201 DSFNATYVQPRRKQRDE----QLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRT 256
D T + + + +N+ T+R GNVL+ +G + +L + L Q
Sbjct: 259 DVLVLTGLTQIPTANPDGMVGEFCSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQY--I 316
Query: 257 KDAGLGVYSLALLNNVSYNVVEFSKSQVEWM-SDKLMRCFEDKRNNPF-------QFRHL 308
AGL L ++ V+ + +EFS+ EW+ +K + + + P + +H
Sbjct: 317 DSAGLSSVPLYFISPVANSSLEFSQIFAEWLCHNKQSKVYLPEPPFPHAELIQTNKLKHY 376
Query: 309 SLCHGLSDLAR-VPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILT 356
HG D + P VV P L G W + N++I T
Sbjct: 377 PSIHG--DFSNDFRQPCVVFTGHPSLRFGDVVHFMELWGKSSLNTVIFT 423
>gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens]
Length = 2440
Score = 41.6 bits (96), Expect = 0.003
Identities = 56/220 (25%), Positives = 85/220 (38%), Gaps = 48/220 (21%)
Query: 374 EKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEAD-IDSSDESDIEEDIDQP 432
EK+ E E K K E KE E+ E+EK +KE +K E +KE D ID + E E + P
Sbjct: 512 EKVEEKEEDKAEKTEKKEEEKKDEEEKDEKEDSK--ENTKEKDKIDGTAEETEEREQATP 569
Query: 433 SAHKTKHDLMMKGEGSRKGSFFKQ---------------AKKSYPMFPAPEERIKWDEYG 477
KT + +G RKG + ++ P P P E I +
Sbjct: 570 RGRKTAN-----SQGRRKGRITRSMTNEAAAASAAAAAATEEPPPPLPPPPEPISTEP-- 622
Query: 478 EIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDVPTKCISTTESIEIKARVTY 537
V + TEEE + GL V TK E + + Y
Sbjct: 623 ---------VETSRWTEEEMEVAKKGLVEHGRNWAAIAKMVGTKS-------EAQCKNFY 666
Query: 538 IDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
+Y+ R + D++ + Q R+ P +D+++C
Sbjct: 667 FNYKRRHNLDNLLQQHKQKTSRK-------PREERDVSQC 699
Score = 30.4 bits (67), Expect = 6.6
Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 332 DLECGFSRDLFIQWCQDPKN-SIILTY---RTTPGTLARFLIDNPSEKITEIELRKRVKL 387
D E +D FIQ PKN +I +Y ++ P + + + +E + R K
Sbjct: 442 DHEKEIFKDKFIQ---HPKNFGLIASYLERKSVPDCVLYYYLTKKNENYKALVRRNYGKR 498
Query: 388 EGK--ELEEYLEKEKLKKEAAKKLEQSKEADIDSSDESDIEEDIDQPSAHKTK 438
G+ ++ ++EK++++ K E++++ + + DE + +E D K K
Sbjct: 499 RGRNQQIARPSQEEKVEEKEEDKAEKTEKKEEEKKDEEEKDEKEDSKENTKEK 551
>gi|90819229 cutaneous T-cell lymphoma-associated antigen 1 isoform
1 [Homo sapiens]
Length = 745
Score = 38.5 bits (88), Expect = 0.024
Identities = 63/287 (21%), Positives = 127/287 (44%), Gaps = 41/287 (14%)
Query: 368 LIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSSDE--SDI 425
LI+ + + + L ++ + EG E+E L+ +KEA + QS EA + + S++
Sbjct: 55 LIEEKCKLLEKFSLVQK-EYEGYEVESSLKNASFEKEATEA--QSLEATCEKLNRFNSEL 111
Query: 426 EEDI--------DQPSAHKTKHDLM---------MKGEGSRKGSFFKQAKKSYPMFPAPE 468
+I ++ S H +++LM ++ E S +AK ++ F A E
Sbjct: 112 VHEILCLEKELKEEKSKHSEQNELMADISKRIQSLEDESKSLKSQVAEAKMTFKRFQANE 171
Query: 469 ERIK------WDEYGEIIKPEDFLVPELQATEEEKSKL---ESGLTNGDEPMDQDLSDVP 519
ER++ W E E+ + + L+ E + +E+ S+L + + +Q L+D
Sbjct: 172 ERLEIEIQDAWKENSELQESQKQLLQEAEVWKEQVSELIKQKRTFEDSKVHAEQVLNDKE 231
Query: 520 TKCISTTES-IEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECC 578
+ TE +++K V ++ E +D D+++ +N + + P A + L
Sbjct: 232 NHIKTLTERLLKMKDGVAMLE-EDVTDDDNLELEMNSESEDGAYLDNPPKGALKKLIHAA 290
Query: 579 ------RAFGGKDIKVYMPKLHETVDATSETHIYQVRLKDSLVSSLQ 619
+ G+ ++Y+ +L E VD T E ++ + +SLQ
Sbjct: 291 KLNASLKTLEGERNQIYI-QLSE-VDKTKEELTEHIKNLQTEQASLQ 335
>gi|42740899 CTAGE family, member 5 isoform 3 [Homo sapiens]
Length = 761
Score = 37.7 bits (86), Expect = 0.041
Identities = 61/286 (21%), Positives = 125/286 (43%), Gaps = 39/286 (13%)
Query: 368 LIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADID--SSDESDI 425
LI+ S+ + + L ++ + EG E+E L+ +KEA + QS EA + + S++
Sbjct: 85 LIEEKSKLLEKFSLVQK-EYEGYEVESSLKDASFEKEATEA--QSLEATCEKLNRSNSEL 141
Query: 426 EEDI--------DQPSAHKTKHDLM---------MKGEGSRKGSFFKQAKKSYPMFPAPE 468
E++I ++ S H + +LM ++ E S +AK ++ +F E
Sbjct: 142 EDEILCLEKELKEEKSKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKMTFKIFQMNE 201
Query: 469 ERIK------WDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEP---MDQDLSDVP 519
ER+K +E ++ + + L+ E + +E+ S+L ++ +Q L+D
Sbjct: 202 ERLKIAIKDALNENSQLQESQKQLLQEAEVWKEQVSELNKQKVTFEDSKVHAEQVLNDKE 261
Query: 520 TKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECC- 578
+ + TE + + E +D D+++ +N + + P A + L
Sbjct: 262 SHIKTLTERLLKMKDWAAMLGEDITDDDNLELEMNSESENGAYLDNPPKGALKKLIHAAK 321
Query: 579 -----RAFGGKDIKVYMPKLHETVDATSETHIYQVRLKDSLVSSLQ 619
+ G+ ++Y+ +L E VD T E ++ + +SLQ
Sbjct: 322 LNASLKTLEGERNQIYI-QLSE-VDKTKEELTEHIKNLQTEQASLQ 365
>gi|42740897 CTAGE family, member 5 isoform 1 [Homo sapiens]
Length = 804
Score = 37.7 bits (86), Expect = 0.041
Identities = 61/286 (21%), Positives = 125/286 (43%), Gaps = 39/286 (13%)
Query: 368 LIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADID--SSDESDI 425
LI+ S+ + + L ++ + EG E+E L+ +KEA + QS EA + + S++
Sbjct: 85 LIEEKSKLLEKFSLVQK-EYEGYEVESSLKDASFEKEATEA--QSLEATCEKLNRSNSEL 141
Query: 426 EEDI--------DQPSAHKTKHDLM---------MKGEGSRKGSFFKQAKKSYPMFPAPE 468
E++I ++ S H + +LM ++ E S +AK ++ +F E
Sbjct: 142 EDEILCLEKELKEEKSKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKMTFKIFQMNE 201
Query: 469 ERIK------WDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEP---MDQDLSDVP 519
ER+K +E ++ + + L+ E + +E+ S+L ++ +Q L+D
Sbjct: 202 ERLKIAIKDALNENSQLQESQKQLLQEAEVWKEQVSELNKQKVTFEDSKVHAEQVLNDKE 261
Query: 520 TKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECC- 578
+ + TE + + E +D D+++ +N + + P A + L
Sbjct: 262 SHIKTLTERLLKMKDWAAMLGEDITDDDNLELEMNSESENGAYLDNPPKGALKKLIHAAK 321
Query: 579 -----RAFGGKDIKVYMPKLHETVDATSETHIYQVRLKDSLVSSLQ 619
+ G+ ++Y+ +L E VD T E ++ + +SLQ
Sbjct: 322 LNASLKTLEGERNQIYI-QLSE-VDKTKEELTEHIKNLQTEQASLQ 365
>gi|42740901 CTAGE family, member 5 isoform 4 [Homo sapiens]
Length = 775
Score = 37.7 bits (86), Expect = 0.041
Identities = 61/286 (21%), Positives = 125/286 (43%), Gaps = 39/286 (13%)
Query: 368 LIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADID--SSDESDI 425
LI+ S+ + + L ++ + EG E+E L+ +KEA + QS EA + + S++
Sbjct: 56 LIEEKSKLLEKFSLVQK-EYEGYEVESSLKDASFEKEATEA--QSLEATCEKLNRSNSEL 112
Query: 426 EEDI--------DQPSAHKTKHDLM---------MKGEGSRKGSFFKQAKKSYPMFPAPE 468
E++I ++ S H + +LM ++ E S +AK ++ +F E
Sbjct: 113 EDEILCLEKELKEEKSKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKMTFKIFQMNE 172
Query: 469 ERIK------WDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEP---MDQDLSDVP 519
ER+K +E ++ + + L+ E + +E+ S+L ++ +Q L+D
Sbjct: 173 ERLKIAIKDALNENSQLQESQKQLLQEAEVWKEQVSELNKQKVTFEDSKVHAEQVLNDKE 232
Query: 520 TKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECC- 578
+ + TE + + E +D D+++ +N + + P A + L
Sbjct: 233 SHIKTLTERLLKMKDWAAMLGEDITDDDNLELEMNSESENGAYLDNPPKGALKKLIHAAK 292
Query: 579 -----RAFGGKDIKVYMPKLHETVDATSETHIYQVRLKDSLVSSLQ 619
+ G+ ++Y+ +L E VD T E ++ + +SLQ
Sbjct: 293 LNASLKTLEGERNQIYI-QLSE-VDKTKEELTEHIKNLQTEQASLQ 336
>gi|42740905 CTAGE family, member 5 isoform 2 [Homo sapiens]
Length = 792
Score = 37.7 bits (86), Expect = 0.041
Identities = 61/286 (21%), Positives = 125/286 (43%), Gaps = 39/286 (13%)
Query: 368 LIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADID--SSDESDI 425
LI+ S+ + + L ++ + EG E+E L+ +KEA + QS EA + + S++
Sbjct: 73 LIEEKSKLLEKFSLVQK-EYEGYEVESSLKDASFEKEATEA--QSLEATCEKLNRSNSEL 129
Query: 426 EEDI--------DQPSAHKTKHDLM---------MKGEGSRKGSFFKQAKKSYPMFPAPE 468
E++I ++ S H + +LM ++ E S +AK ++ +F E
Sbjct: 130 EDEILCLEKELKEEKSKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKMTFKIFQMNE 189
Query: 469 ERIK------WDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEP---MDQDLSDVP 519
ER+K +E ++ + + L+ E + +E+ S+L ++ +Q L+D
Sbjct: 190 ERLKIAIKDALNENSQLQESQKQLLQEAEVWKEQVSELNKQKVTFEDSKVHAEQVLNDKE 249
Query: 520 TKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECC- 578
+ + TE + + E +D D+++ +N + + P A + L
Sbjct: 250 SHIKTLTERLLKMKDWAAMLGEDITDDDNLELEMNSESENGAYLDNPPKGALKKLIHAAK 309
Query: 579 -----RAFGGKDIKVYMPKLHETVDATSETHIYQVRLKDSLVSSLQ 619
+ G+ ++Y+ +L E VD T E ++ + +SLQ
Sbjct: 310 LNASLKTLEGERNQIYI-QLSE-VDKTKEELTEHIKNLQTEQASLQ 353
>gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1
[Homo sapiens]
Length = 759
Score = 37.0 bits (84), Expect = 0.071
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 361 PGTLARFLIDNPSEKITEIELRKRVKLEGKEL-----EEYLEKEKLKKEAAKKLEQSKEA 415
PG +A F ++N S K E E +K+ K E K E + EK KK+ K+ ++ +E
Sbjct: 153 PGAIALFNVNNSSNKDQEPEEKKKKKKEKKSKSDDKNENKNDPEKKKKKKDKEKKKKEEK 212
Query: 416 DIDSSDESDIEEDIDQPSAH 435
D +E E + PS +
Sbjct: 213 SKDKKEEEKKEVVVIDPSGN 232
>gi|71143141 cyclic nucleotide gated channel alpha 1 isoform 2 [Homo
sapiens]
Length = 690
Score = 37.0 bits (84), Expect = 0.071
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 361 PGTLARFLIDNPSEKITEIELRKRVKLEGKEL-----EEYLEKEKLKKEAAKKLEQSKEA 415
PG +A F ++N S K E E +K+ K E K E + EK KK+ K+ ++ +E
Sbjct: 84 PGAIALFNVNNSSNKDQEPEEKKKKKKEKKSKSDDKNENKNDPEKKKKKKDKEKKKKEEK 143
Query: 416 DIDSSDESDIEEDIDQPSAH 435
D +E E + PS +
Sbjct: 144 SKDKKEEEKKEVVVIDPSGN 163
>gi|21361639 DIPB protein [Homo sapiens]
Length = 344
Score = 37.0 bits (84), Expect = 0.071
Identities = 17/74 (22%), Positives = 37/74 (50%)
Query: 378 EIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSSDESDIEEDIDQPSAHKT 437
E+++ + ++E + EE +E+ + E + E+ E + D E D EE+++ +
Sbjct: 82 EVKVEQEREIESEAGEESESEEESESEEESETEEESEDESDEESEEDSEEEMEDEQESEA 141
Query: 438 KHDLMMKGEGSRKG 451
+ D +GE +G
Sbjct: 142 EEDNQEEGESEAEG 155
Score = 30.0 bits (66), Expect = 8.6
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 402 KKEAAKKLEQSKEADIDSSDESDIEEDIDQPSAHKTKHD 440
K+EA K+EQ +E + ++ +ES+ EE+ + +T+ +
Sbjct: 78 KEEAEVKVEQEREIESEAGEESESEEESESEEESETEEE 116
>gi|145580615 KRI1 homolog [Homo sapiens]
Length = 709
Score = 37.0 bits (84), Expect = 0.071
Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 9/152 (5%)
Query: 347 QDPKNSIILTYRTTPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLK-KEA 405
++P ++ + TY + + R + EK E RK+ + + K+ EE + + LK KE
Sbjct: 309 EEPDSASVKTYPRSIASSVRRKDERRKEKREETRERKK-REKAKKQEELKQLKNLKRKEI 367
Query: 406 AKKLEQSKEA---DIDSSDESDIEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
KLE+ ++ ++ +E D+E+D D P+ H LM K G ++ K +
Sbjct: 368 LAKLEKLRKVTGNEMLGLEEGDLEDDFD-PAQH---DQLMQKCFGDEYYGAVEEEKPQFE 423
Query: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATE 494
E+ WD + + D+ EL +
Sbjct: 424 EEEGLEDDWNWDTWDGPEQEGDWSQQELHCED 455
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 37.0 bits (84), Expect = 0.071
Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 15/133 (11%)
Query: 378 EIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSSDESDIEEDIDQPSAHKT 437
E ++K K++ ++ +E EKEK KKE AKK D++ I+++ ++P +
Sbjct: 635 EKTVKKETKVKPEDKKE--EKEKPKKEVAKK-----------EDKTPIKKE-EKPKKEEV 680
Query: 438 KHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEK 497
K ++ + + K K+ KK P +E +K +E E+ K E E++ ++
Sbjct: 681 KKEVKKEIKKEEKKEPKKEVKKETPPKEVKKE-VKKEEKKEVKKEEKEPKKEIKKLPKDA 739
Query: 498 SKLESGLTNGDEP 510
K + L+ +P
Sbjct: 740 KKSSTPLSEAKKP 752
>gi|168229156 NFKB activating protein [Homo sapiens]
Length = 415
Score = 36.6 bits (83), Expect = 0.092
Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 18/134 (13%)
Query: 377 TEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSSDESDIEEDIDQPSA-- 434
T E +K+ KE + K+K K KK S+++D DS E+D ++ ++ A
Sbjct: 177 TSEEEKKKKSSRSKERSKKRRKKKSSKRKHKKY--SEDSDSDSDSETDSSDEDNKRRAKK 234
Query: 435 ---------HKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAP--EERIKWDEYGEIIKPE 483
H++K + + SRK S +K+S F ++R K +E ++I PE
Sbjct: 235 AKKKEKKKKHRSKKYKKKRSKKSRKESSDSSSKESQEEFLENPWKDRTKAEEPSDLIGPE 294
Query: 484 DFLVPELQATEEEK 497
P+ ++++K
Sbjct: 295 ---APKTLTSQDDK 305
Score = 32.0 bits (71), Expect = 2.3
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 370 DNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSSDESDIEEDI 429
D+ ++ E R+ K + KE ++ +K KK+ +KK S++ DSS + EE +
Sbjct: 218 DSETDSSDEDNKRRAKKAKKKEKKKKHRSKKYKKKRSKK---SRKESSDSSSKESQEEFL 274
Query: 430 DQPSAHKTK 438
+ P +TK
Sbjct: 275 ENPWKDRTK 283
>gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo
sapiens]
Length = 1938
Score = 36.6 bits (83), Expect = 0.092
Identities = 66/334 (19%), Positives = 131/334 (39%), Gaps = 31/334 (9%)
Query: 379 IELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSSDES--DIEEDIDQPSAHK 436
I++ +++ + +LE LE+EK + ++ ++ E D+ S ES D+E D Q
Sbjct: 1025 IKINAKLEQQTDDLEGSLEQEKKLRADLERAKRKLEGDLKMSQESIMDLENDKQQIEEKL 1084
Query: 437 TKHDLMMK-------GEGSRKGSFFKQAKKSYPMFPAPEERIKWDE--YGEIIKPEDFLV 487
K + + E F K+ K+ EE I+ + +I K L
Sbjct: 1085 KKKEFELSQLQAKIDDEQVHSLQFQKKIKELQARIEELEEEIEAEHTLRAKIEKQRSDLA 1144
Query: 488 PELQATEEEKSKLESGLTNGDEPMDQDLSDVPTKCISTTESIEIKARVTYIDYEGRSDGD 547
EL+ E + SG T+ M++ K E ++ T + D
Sbjct: 1145 RELEEISERLEE-ASGATSAQIEMNKKREAEFQKMRRDLEEATLQHEATAATLR-KKQAD 1202
Query: 548 SIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDIKVYMPKLHETVDATSETHIYQ 607
S+ ++ Q+ Q + E S ++K+ + + ++A S++
Sbjct: 1203 SVAELGEQIDNLQRVKQKLEKEKS-------------ELKMEIDDMASNIEALSKSKSNI 1249
Query: 608 VRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDSEMQVEAP 667
R ++ KAKD + + L+M+ +++ T + GEL E+ E +
Sbjct: 1250 ERTCRTVEDQFSEIKAKDEQQTQLIHDLNMQKARLQT----QNGELSHRVEEKESLISQL 1305
Query: 668 SDSSVIAQQKAMKSLFGDDEKETGEESEIIPTLE 701
+ S Q+ ++ L E+ET ++ + L+
Sbjct: 1306 TKSKQALTQQ-LEELKRQMEEETKAKNAMAHALQ 1338
>gi|71061468 centromere protein E [Homo sapiens]
Length = 2701
Score = 36.6 bits (83), Expect = 0.092
Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 15/149 (10%)
Query: 370 DNPSEKITEIELRKRVKLEGKELEEYLEKEKLK------KEAAKKLEQSKEADIDSSDES 423
D +E +++EL + + + K+L+EY++ +KL+ + + +E K+ D
Sbjct: 572 DLENELSSKVELLREKEDQIKKLQEYIDSQKLENIKMDLSYSLESIEDPKQMKQTLFDAE 631
Query: 424 DIEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEIIKPE 483
+ D + SA +L +K + + +KQ + ++ + E K K +
Sbjct: 632 TVALDAKRESAFLRSENLELKEKMKELATTYKQMENDIQLYQSQLEAKK--------KMQ 683
Query: 484 DFLVPELQATEEEKSKLESGLTNGDEPMD 512
L ELQ+ E +KL S L +G P D
Sbjct: 684 VDLEKELQSAFNEITKLTS-LIDGKVPKD 711
>gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens]
Length = 1960
Score = 36.2 bits (82), Expect = 0.12
Identities = 47/231 (20%), Positives = 99/231 (42%), Gaps = 23/231 (9%)
Query: 382 RKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSSDESDI---EEDIDQPSAHKTK 438
+K+++ +ELEE LE+E+ ++ + + + EA + +E I +++ K
Sbjct: 938 KKKMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEEQIILEDQNCKLAKEKKLL 997
Query: 439 HDLM------MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDFLVPELQA 492
D + + E + S K K M EER++ +E + Q
Sbjct: 998 EDRIAEFTTNLTEEEEKSKSLAKLKNKHEAMITDLEERLRREE------------KQRQE 1045
Query: 493 TEEEKSKLESGLTN-GDEPMDQDLSDVPTKCISTTESIEIKARVTYIDYEGRSDGDSIKK 551
E+ + KLE T+ D+ + K + E++A + ++ E ++KK
Sbjct: 1046 LEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKEEELQAALARVEEEAAQKNMALKK 1105
Query: 552 IIN-QMKPRQLIIVHGPPEASQDLAECCRAFGGKDIKVYMPKLHETVDATS 601
I + + +L AS++ AE + G++++ +L +T+D+T+
Sbjct: 1106 IRELESQISELQEDLESERASRNKAEKQKRDLGEELEALKTELEDTLDSTA 1156
>gi|224593278 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo
sapiens]
Length = 796
Score = 36.2 bits (82), Expect = 0.12
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 374 EKITEIELRKRVKLEGKELEE-YLEKEKLKKEAAKKLEQSKEADIDSSDESDIEEDIDQP 432
EKI ++ RK+ K E KE + LEKEK KE ++ EQ D+ +DE E++ +
Sbjct: 119 EKIEKV--RKKRKTEDKEAKSGKLEKEKEAKEGSEPKEQE---DLQENDEEGSEDEASET 173
Query: 433 SAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDE 475
+++ K + + K+ KK E+ ++DE
Sbjct: 174 DYSSADENILTKADTLKVKDRKKKKKKGQEAGGFFEDASQYDE 216
>gi|154146191 heat shock 90kDa protein 1, alpha isoform 2 [Homo
sapiens]
Length = 732
Score = 35.8 bits (81), Expect = 0.16
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 379 IELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSSDESDIEEDIDQPSAHKTK 438
+E + ++ E EE +KE+ K++ K+ E E + SDE + ++D D+ K K
Sbjct: 222 VEKERDKEVSDDEAEEKEDKEEEKEKEEKESEDKPEIEDVGSDEEEEKKDGDKKKKKKIK 281
Query: 439 HDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEIIK 481
+ + ++ K+ P++ + I +EYGE K
Sbjct: 282 EKYIDQ----------EELNKTKPIWTRNPDDITNEEYGEFYK 314
>gi|153792590 heat shock 90kDa protein 1, alpha isoform 1 [Homo
sapiens]
Length = 854
Score = 35.8 bits (81), Expect = 0.16
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 379 IELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSSDESDIEEDIDQPSAHKTK 438
+E + ++ E EE +KE+ K++ K+ E E + SDE + ++D D+ K K
Sbjct: 344 VEKERDKEVSDDEAEEKEDKEEEKEKEEKESEDKPEIEDVGSDEEEEKKDGDKKKKKKIK 403
Query: 439 HDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEIIK 481
+ + ++ K+ P++ + I +EYGE K
Sbjct: 404 EKYIDQ----------EELNKTKPIWTRNPDDITNEEYGEFYK 436
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 35.8 bits (81), Expect = 0.16
Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 17/170 (10%)
Query: 370 DNPSEKITEIELRKRVKLE----GKELEEYLEKEKLKKEAAKKLEQSKEADIDSSDESDI 425
D P +K E +++ E K ++ +LEKE KE K L+Q KE + +
Sbjct: 727 DVPEKKKAESPVKEEAVAEVVTITKSVKVHLEKET--KEEGKPLQQEKEKEKAGGEGGSE 784
Query: 426 EEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDF 485
EE D+ + K D+ + GE K ++ K+ + + +E G + D
Sbjct: 785 EEGSDKGAKGSRKEDIAVNGEVEGKEEVEQETKE--------KGSGREEEKGVVTNGLD- 835
Query: 486 LVPELQATEEEKSKLESGLTNGDEPMDQDLSDVPTKCISTTESIEIKARV 535
L P + +KS+ + +T E + + D TK I T+S+ + +V
Sbjct: 836 LSPADEKKGGDKSEEKVVVTKTVEKITSEGGDGATKYI--TKSVTVTQKV 883
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 35.8 bits (81), Expect = 0.16
Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 17/170 (10%)
Query: 370 DNPSEKITEIELRKRVKLE----GKELEEYLEKEKLKKEAAKKLEQSKEADIDSSDESDI 425
D P +K E +++ E K ++ +LEKE KE K L+Q KE + +
Sbjct: 351 DVPEKKKAESPVKEEAVAEVVTITKSVKVHLEKET--KEEGKPLQQEKEKEKAGGEGGSE 408
Query: 426 EEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDF 485
EE D+ + K D+ + GE K ++ K+ + + +E G + D
Sbjct: 409 EEGSDKGAKGSRKEDIAVNGEVEGKEEVEQETKE--------KGSGREEEKGVVTNGLD- 459
Query: 486 LVPELQATEEEKSKLESGLTNGDEPMDQDLSDVPTKCISTTESIEIKARV 535
L P + +KS+ + +T E + + D TK I T+S+ + +V
Sbjct: 460 LSPADEKKGGDKSEEKVVVTKTVEKITSEGGDGATKYI--TKSVTVTQKV 507
>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
Length = 2663
Score = 35.8 bits (81), Expect = 0.16
Identities = 33/149 (22%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 383 KRVKLEGKELEEYLEKEK-----LKKEAAKKLEQSKEADIDSSDESDIEEDIDQPSAHKT 437
KR+K K++ +EK +KE + K + KE + E ++ D+PS +
Sbjct: 719 KRIKDTNKDISRSFREEKDRSNKAEKERSLKEKSPKEEKLRLYKEERKKKSKDRPSKLEK 778
Query: 438 KHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEY---GEIIKPEDFLVPELQATE 494
K+DL K FK+ K+ E +DEY + ++ ED + ++
Sbjct: 779 KNDLKEDKISKEKEKIFKEDKEKLKKEKVYREDSAFDEYCNKNQFLENED---TKFSLSD 835
Query: 495 EEKSKLESGLTN------GDEPMDQDLSD 517
+++ + S L++ G++ D ++D
Sbjct: 836 DQRDRWFSDLSDSSFDFKGEDSWDSPVTD 864
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 35.8 bits (81), Expect = 0.16
Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
Query: 380 ELRKRVKLEGKELEEYLEKE---KLKKEAAKKLEQSKEADIDSSDESDIEEDIDQPSAHK 436
E+R+R + + +E E+ LEKE + +KE K E+ +E + + E + + ++++ +
Sbjct: 503 EIREREREKEREREKELEKEQEQEREKEREKDRERQQEKEKELEKEQEKQREMEKERKQE 562
Query: 437 TKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDFLVPELQATEEE 496
+ +L + E ++ K+ +K + +ER K +E E +P L P ++ E E
Sbjct: 563 KEKELERQKEKEKELQKMKEQEKECEL---EKEREKLEEKIEPREPN--LEPMVEKQESE 617
Query: 497 KS 498
S
Sbjct: 618 NS 619
Score = 32.3 bits (72), Expect = 1.7
Identities = 24/110 (21%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 374 EKITEIELRKRVKLEGKELEEYLEKEK------LKKEAAKKLEQSKEADIDSSDESDIEE 427
+K+ E E ++ E ++LEE +E + ++K+ ++ +E + + +S+ E
Sbjct: 578 QKMKEQEKECELEKEREKLEEKIEPREPNLEPMVEKQESENSCNKEEEPVFTRQDSNRSE 637
Query: 428 DIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSY-PMFPAPEERIKWDEY 476
P H+T+ + + + +FKQ +KS P F +E++K ++
Sbjct: 638 KEATPVVHETEPESGSQPRPAVLSGYFKQFQKSLPPRFQRQQEQMKQQQW 687
Score = 30.0 bits (66), Expect = 8.6
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 374 EKITEIELRKRVKLEGK---ELEEYLEKEKLK-KEAAKKLEQSKEADIDSSDESDIEEDI 429
EK E E K+ ++E + E E+ LE++K K KE K EQ KE +++ E +EE I
Sbjct: 542 EKELEKEQEKQREMEKERKQEKEKELERQKEKEKELQKMKEQEKECELEKEREK-LEEKI 600
Query: 430 D 430
+
Sbjct: 601 E 601
>gi|4757900 calreticulin precursor [Homo sapiens]
Length = 417
Score = 35.4 bits (80), Expect = 0.21
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 375 KITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSSDESDIEEDIDQPSA 434
K E +++ + E + EE +K++ ++E A+ E ++ D D DE D EED ++
Sbjct: 351 KAAEKQMKDKQDEEQRLKEEEEDKKRKEEEEAEDKEDDEDKDEDEEDEEDKEEDEEEDVP 410
Query: 435 HKTKHDL 441
+ K +L
Sbjct: 411 GQAKDEL 417
>gi|148839339 nexilin (F actin binding protein) [Homo sapiens]
Length = 675
Score = 35.4 bits (80), Expect = 0.21
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 374 EKITEIELRKRVKLEGKEL--EEYLEKEKLKKEAAKKLEQSKEADIDSSDESDIEEDIDQ 431
EK + E RKR + E K ++ LEK K+++E AK+ EQ + DI+++ E+ D
Sbjct: 110 EKQRQEEQRKRTEEERKRRIEQDMLEKRKIQRELAKRAEQIE--DINNTGTESASEEGDD 167
Query: 432 PSAHKTKHDLMMKGEGSRKGSF---FKQAKKSYPMFPAPEERIKWDEYGEIIKPEDFLVP 488
K G K +F K+ ++ + ++RI+++E +K L
Sbjct: 168 SLLITVVPVKSYKTSGKMKKNFEDLEKEREEKERIKYEEDKRIRYEEQRPSLKEAKCLSL 227
Query: 489 ELQATEEEKSKLES 502
+ E ++K ES
Sbjct: 228 VMDDEIESEAKKES 241
>gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens]
Length = 569
Score = 35.4 bits (80), Expect = 0.21
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 378 EIELRKRVKLEGKELEEYLEKEKLK-KEAAKKLEQSKEADIDSSDESDIEEDIDQPSAHK 436
E E++K +++ KE +E E+E++K KE +++ E + +S DE D +ED Q +
Sbjct: 378 EEEMKKEEEMKKKEEKEEEEEEEMKQKEEEEEIRNKNEEEGESKDEEDEDEDGGQKPEGE 437
Query: 437 TKHD 440
+ D
Sbjct: 438 PQQD 441
Score = 33.1 bits (74), Expect = 1.0
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 382 RKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSSDESDIEEDI 429
RKR++ +E++E E+E K+E KK E+ +E + + + + EE+I
Sbjct: 363 RKRMRAFQQEMKEKEEEEMKKEEEMKKKEEKEEEEEEEMKQKEEEEEI 410
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,197,449
Number of Sequences: 37866
Number of extensions: 1428059
Number of successful extensions: 7594
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 162
Number of HSP's that attempted gapping in prelim test: 6944
Number of HSP's gapped (non-prelim): 688
length of query: 782
length of database: 18,247,518
effective HSP length: 110
effective length of query: 672
effective length of database: 14,082,258
effective search space: 9463277376
effective search space used: 9463277376
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.