Guide to the Human Genome
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Name: CTAGE1 Sequence: fasta or formatted (745aa) NCBI GI: 90819229
Description:

cutaneous T-cell lymphoma-associated antigen 1 isoform 1

Referenced in:

T cells

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         47           2
 C cysteine            0.8          6           1
 D aspartate           4.7         35           3
 E glutamate          11.5         86           2
 F phenylalanine       4.2         31           2
 G glycine             4.6         34           3
 H histidine           2.1         16           1
 I isoleucine          3.1         23           2
 K lysine              8.3         62           2
 L leucine            10.6         79           2
 M methionine          2.1         16           2
 N asparagine          4.2         31           1
 P proline             8.5         63           5
 Q glutamine           4.2         31           2
 R arginine            6.2         46           2
 S serine              7.5         56           2
 T threonine           3.9         29           1
 V valine              3.6         27           1
 W tryptophan          1.1          8           1
 Y tyrosine            2.6         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cutaneous T-cell lymphoma-associated antigen 1 isofo... 
CTAGE5                0.861   CTAGE family, member 5 isoform 1 
CTAGE5                0.861   CTAGE family, member 5 isoform 4 
CTAGE5                0.861   CTAGE family, member 5 isoform 2 
CTAGE5                0.792   CTAGE family, member 5 isoform 3 
LOC441294             0.754   hypothetical protein LOC441294 
CTAGE6                0.751   CTAGE family, member 6 
LOC643854             0.749   hypothetical protein LOC643854 
CTAGE4                0.745   CTAGE family, member 4 
MIA3                  0.135   melanoma inhibitory activity family, member 3 [Homo...
LOC283685             0.039   PREDICTED: golgi autoantigen, golgin subfamily a-li...
MYH2                  0.038   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.038   myosin, heavy chain 2, skeletal muscle, adult [Homo...
LOC440243             0.038   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC727832             0.038   golgi autoantigen, golgin subfamily a-like 
MYH1                  0.038   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH7                  0.038   myosin, heavy chain 7, cardiac muscle, beta 
MYH6                  0.038   myosin heavy chain 6 
MYH13                 0.038   myosin, heavy polypeptide 13, skeletal muscle [Homo...
LOC283767             0.037   golgi autoantigen, golgin subfamily a-like 
KTN1                  0.037   kinectin 1 isoform a 
KTN1                  0.037   kinectin 1 isoform c 
KTN1                  0.037   kinectin 1 isoform a 
LOC283685             0.037   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC645202             0.036   PREDICTED: hypothetical protein LOC645202 
GOLGB1                0.036   golgi autoantigen, golgin subfamily b, macrogolgin ...
MYH10                 0.036   myosin, heavy polypeptide 10, non-muscle 
GOLGA4                0.036   golgi autoantigen, golgin subfamily a, 4 
CCDC88A               0.035   coiled-coil domain containing 88A isoform 1 
CCDC88A               0.035   coiled-coil domain containing 88A isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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