Guide to the Human Genome
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Name: CTAGE5 Sequence: fasta or formatted (792aa) NCBI GI: 42740905
Description:

CTAGE family, member 5 isoform 2

Referenced in:

T cells

Other entries for this name:
alt prot [804aa] CTAGE family, member 5 isoform 1
alt prot [761aa] CTAGE family, member 5 isoform 3
alt prot [775aa] CTAGE family, member 5 isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         47           2
 C cysteine            0.6          5           1
 D aspartate           4.9         39           3
 E glutamate          12.2         97           3
 F phenylalanine       3.8         30           2
 G glycine             5.3         42           4
 H histidine           2.1         17           1
 I isoleucine          2.7         21           2
 K lysine              7.2         57           2
 L leucine            11.1         88           2
 M methionine          2.4         19           2
 N asparagine          4.7         37           1
 P proline             9.2         73           5
 Q glutamine           4.2         33           2
 R arginine            5.6         44           2
 S serine              8.3         66           2
 T threonine           3.7         29           1
 V valine              3.2         25           2
 W tryptophan          0.9          7           1
 Y tyrosine            2.0         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CTAGE family, member 5 isoform 2 
CTAGE5                0.989   CTAGE family, member 5 isoform 1 
CTAGE5                0.980   CTAGE family, member 5 isoform 4 
CTAGE5                0.918   CTAGE family, member 5 isoform 3 
CTAGE1                0.810   cutaneous T-cell lymphoma-associated antigen 1 isofo...
LOC441294             0.783   hypothetical protein LOC441294 
LOC643854             0.782   hypothetical protein LOC643854 
CTAGE6                0.781   CTAGE family, member 6 
CTAGE4                0.779   CTAGE family, member 4 
MIA3                  0.158   melanoma inhibitory activity family, member 3 [Homo...
KTN1                  0.047   kinectin 1 isoform a 
KTN1                  0.047   kinectin 1 isoform c 
KTN1                  0.047   kinectin 1 isoform a 
CCDC88A               0.038   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.038   coiled-coil domain containing 88A isoform 1 
MYH6                  0.037   myosin heavy chain 6 
MYH10                 0.036   myosin, heavy polypeptide 10, non-muscle 
LOC645202             0.035   PREDICTED: hypothetical protein LOC645202 
CENPF                 0.035   centromere protein F 
SYCP1                 0.035   synaptonemal complex protein 1 
MYH1                  0.035   myosin, heavy chain 1, skeletal muscle, adult [Homo...
LOC283685             0.035   PREDICTED: golgi autoantigen, golgin subfamily a-li...
MYH2                  0.035   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.035   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH9                  0.034   myosin, heavy polypeptide 9, non-muscle 
CIT                   0.034   citron 
TCHH                  0.034   trichohyalin 
MYO18A                0.034   myosin 18A isoform b 
MYO18A                0.034   myosin 18A isoform a 
EEA1                  0.034   early endosome antigen 1, 162kD 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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