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Search of human proteins with 33695090
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|33695090 prostate tumor overexpressed 1 [Homo sapiens]
(416 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|33695090 prostate tumor overexpressed 1 [Homo sapiens] 853 0.0
gi|50428940 mediator complex subunit 25 [Homo sapiens] 267 1e-71
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 40 0.005
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 38 0.015
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 38 0.015
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 37 0.033
gi|239757414 PREDICTED: hypothetical protein XP_002345432 [Homo ... 36 0.056
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 36 0.074
gi|17511255 poly(A) binding protein interacting protein 1 isofor... 36 0.074
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 35 0.096
gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo ... 35 0.096
gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo ... 35 0.096
gi|5032099 smoothened [Homo sapiens] 35 0.13
gi|239749482 PREDICTED: hypothetical protein [Homo sapiens] 35 0.13
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 35 0.13
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 35 0.13
gi|239743620 PREDICTED: hypothetical protein [Homo sapiens] 35 0.16
gi|169207534 PREDICTED: hypothetical protein [Homo sapiens] 34 0.28
gi|239745038 PREDICTED: hypothetical protein XP_002343338 [Homo ... 34 0.28
gi|188536004 zinc finger protein 469 [Homo sapiens] 34 0.28
gi|237757310 synaptojanin 1 isoform a [Homo sapiens] 33 0.37
gi|237757308 synaptojanin 1 isoform b [Homo sapiens] 33 0.37
gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo ... 33 0.37
gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo ... 33 0.37
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 33 0.48
gi|239756566 PREDICTED: hypothetical protein [Homo sapiens] 33 0.48
gi|169204821 PREDICTED: hypothetical protein [Homo sapiens] 33 0.48
gi|169205432 PREDICTED: hypothetical protein [Homo sapiens] 33 0.48
gi|169204105 PREDICTED: hypothetical protein [Homo sapiens] 33 0.48
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 33 0.62
>gi|33695090 prostate tumor overexpressed 1 [Homo sapiens]
Length = 416
Score = 853 bits (2203), Expect = 0.0
Identities = 416/416 (100%), Positives = 416/416 (100%)
Query: 1 MVRPRRAPYRSGAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGA 60
MVRPRRAPYRSGAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGA
Sbjct: 1 MVRPRRAPYRSGAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGA 60
Query: 61 RVFGALGPIGPSSPGLTLGGLAVSEHRLSNKLLAWSGVLEWQEKRRPYSDSTAKLKRTLP 120
RVFGALGPIGPSSPGLTLGGLAVSEHRLSNKLLAWSGVLEWQEKRRPYSDSTAKLKRTLP
Sbjct: 61 RVFGALGPIGPSSPGLTLGGLAVSEHRLSNKLLAWSGVLEWQEKRRPYSDSTAKLKRTLP 120
Query: 121 CQAYVNQGENLETDQWPQKLIMQLIPQQLLTTLGPLFRNSQLAQFHFTNRDCDSLKGLCR 180
CQAYVNQGENLETDQWPQKLIMQLIPQQLLTTLGPLFRNSQLAQFHFTNRDCDSLKGLCR
Sbjct: 121 CQAYVNQGENLETDQWPQKLIMQLIPQQLLTTLGPLFRNSQLAQFHFTNRDCDSLKGLCR 180
Query: 181 IMGNGFAGCMLFPHISPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVSAIRQVITTRKQAV 240
IMGNGFAGCMLFPHISPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVSAIRQVITTRKQAV
Sbjct: 181 IMGNGFAGCMLFPHISPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVSAIRQVITTRKQAV 240
Query: 241 GPGGVNSGPVQIVNNKFLAWSGVMEWQEPRPEPNSRSKRWLPSHVYVNQGEILRTEQWPR 300
GPGGVNSGPVQIVNNKFLAWSGVMEWQEPRPEPNSRSKRWLPSHVYVNQGEILRTEQWPR
Sbjct: 241 GPGGVNSGPVQIVNNKFLAWSGVMEWQEPRPEPNSRSKRWLPSHVYVNQGEILRTEQWPR 300
Query: 301 KLYMQLIPQQLLTTLVPLFRNSRLVQFHFTKDLETLKSLCRIMDNGFAGCVHFSYKASCE 360
KLYMQLIPQQLLTTLVPLFRNSRLVQFHFTKDLETLKSLCRIMDNGFAGCVHFSYKASCE
Sbjct: 301 KLYMQLIPQQLLTTLVPLFRNSRLVQFHFTKDLETLKSLCRIMDNGFAGCVHFSYKASCE 360
Query: 361 IRVLMLLYSSEKKIFIGLIPHDQGNFVNGIRRVIANQQQVLQRNLEQEQQQRGMGG 416
IRVLMLLYSSEKKIFIGLIPHDQGNFVNGIRRVIANQQQVLQRNLEQEQQQRGMGG
Sbjct: 361 IRVLMLLYSSEKKIFIGLIPHDQGNFVNGIRRVIANQQQVLQRNLEQEQQQRGMGG 416
>gi|50428940 mediator complex subunit 25 [Homo sapiens]
Length = 747
Score = 267 bits (683), Expect = 1e-71
Identities = 153/282 (54%), Positives = 181/282 (64%), Gaps = 25/282 (8%)
Query: 6 RAPYRSGAGGPLGGRGRPP--RPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGARVF 63
+AP GP G PP +P +V V S A P P + AP
Sbjct: 322 QAPAPQLPPGPPGAPKPPPASQPSLVSTVAPGSGLAPTAQPGAPSMAGTVAPG------- 374
Query: 64 GALGPIGPSSPGLTLGGLAVSEHRLSNKLLAWSGVLEWQEKRRPYS-DSTAKLKRTLPCQ 122
G GP LGG + +SNKLLAWSGVLEWQEK +P S D+ KL R+LPCQ
Sbjct: 375 GVSGPSPAQLGAPALGG----QQSVSNKLLAWSGVLEWQEKPKPASVDANTKLTRSLPCQ 430
Query: 123 AYVNQGENLETDQWPQKLIMQLIPQQLLTTLGPLFRNSQLAQFHFTNRDCDSLKGLCRIM 182
YVN GENL+T+QWPQKLIMQLIPQQLLTTLGPLFRNS++ QFHFTN+D +SLKGL RIM
Sbjct: 431 VYVNHGENLKTEQWPQKLIMQLIPQQLLTTLGPLFRNSRMVQFHFTNKDLESLKGLYRIM 490
Query: 183 GNGFAGCMLFPHISPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVSAIRQVITTRKQAV-- 240
GNGFAGC+ FPH +PCEVRVLMLLYSSKKKIFMGLIPYDQSGFV+ IRQVIT KQ
Sbjct: 491 GNGFAGCVHFPHTAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQVQQQ 550
Query: 241 -------GPGGVNSGP--VQIVNNKFLAWSGVMEWQEPRPEP 273
G GG + P I+ ++ +++ + P+P+P
Sbjct: 551 KLEQQQRGMGGQQAPPGLGPILEDQARPSQNLLQLRPPQPQP 592
Score = 237 bits (605), Expect = 1e-62
Identities = 128/193 (66%), Positives = 147/193 (76%), Gaps = 18/193 (9%)
Query: 240 VGPGGVNS-----------GPVQIVNNKFLAWSGVMEWQE-PRP---EPNSRSKRWLPSH 284
V PGGV+ G Q V+NK LAWSGV+EWQE P+P + N++ R LP
Sbjct: 371 VAPGGVSGPSPAQLGAPALGGQQSVSNKLLAWSGVLEWQEKPKPASVDANTKLTRSLPCQ 430
Query: 285 VYVNQGEILRTEQWPRKLYMQLIPQQLLTTLVPLFRNSRLVQFHFT-KDLETLKSLCRIM 343
VYVN GE L+TEQWP+KL MQLIPQQLLTTL PLFRNSR+VQFHFT KDLE+LK L RIM
Sbjct: 431 VYVNHGENLKTEQWPQKLIMQLIPQQLLTTLGPLFRNSRMVQFHFTNKDLESLKGLYRIM 490
Query: 344 DNGFAGCVHFSYKASCEIRVLMLLYSSEKKIFIGLIPHDQGNFVNGIRRVIANQQQVLQR 403
NGFAGCVHF + A CE+RVLMLLYSS+KKIF+GLIP+DQ FVNGIR+VI N +QV Q+
Sbjct: 491 GNGFAGCVHFPHTAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQVQQQ 550
Query: 404 NLEQEQQQRGMGG 416
L EQQQRGMGG
Sbjct: 551 KL--EQQQRGMGG 561
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 39.7 bits (91), Expect = 0.005
Identities = 28/68 (41%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 11 SGAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGARVFGALGPIG 70
S A P GGRGR P V PA P GP PP A PP G GP G
Sbjct: 193 SRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPP-FPAGQTPPRPPLGPPGPPGPPG 251
Query: 71 PSSPGLTL 78
P PG L
Sbjct: 252 PPPPGQVL 259
Score = 29.6 bits (65), Expect = 5.3
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 3 RPRRAPYRSGAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPM 57
+P P G P+ G G PP P + P P GP PPR PP+
Sbjct: 286 QPPLGPLPPGPPPPVPGYGPPPGP-----PPPQQGPPPPPGPFPPRPPGPLGPPL 335
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 38.1 bits (87), Expect = 0.015
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 11 SGAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGARVFGALGPIG 70
SG GP G RG PP P+ + P GP PR R+ P G GP G
Sbjct: 1154 SGPAGPSGPRG-PPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPG 1212
Query: 71 PSSPGLTLGGLA 82
P PG+ + A
Sbjct: 1213 PPGPGIDMSAFA 1224
Score = 34.3 bits (77), Expect = 0.21
Identities = 28/87 (32%), Positives = 34/87 (39%), Gaps = 25/87 (28%)
Query: 4 PRRAPYRSGAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGP--------------QPPRI 49
PR P +GA GP G +G P P S P PRGP +P +
Sbjct: 208 PRGPPGPAGAPGPQGFQGNPGEP----GEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKA 263
Query: 50 RARSAPPMEGARVFGALGPIGPSSPGL 76
R P +GAR F P +PGL
Sbjct: 264 GERGPPGPQGARGF-------PGTPGL 283
Score = 31.2 bits (69), Expect = 1.8
Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 4 PRRAPYRSGAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGARVF 63
PR P G+ GP G G P + A S P P P R P
Sbjct: 391 PRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQ------- 443
Query: 64 GALGPIGP 71
GA GP+GP
Sbjct: 444 GATGPLGP 451
Score = 30.0 bits (66), Expect = 4.0
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 7 APYRSGAGGPLGGRGRPPR-----PLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGAR 61
+P +G+ GP+G RG P P R P GP P + P GA
Sbjct: 313 SPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGP-VGPAGGPGFPGAP 371
Query: 62 VFGALGPIGPS 72
GA G GP+
Sbjct: 372 --GAKGEAGPT 380
Score = 29.3 bits (64), Expect = 6.9
Identities = 25/73 (34%), Positives = 27/73 (36%), Gaps = 10/73 (13%)
Query: 8 PYRSGAGGPLGGRGR------PPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGAR 61
P R GA G G RG P P PA P G Q R A + PM +
Sbjct: 1046 PGRDGAAGVKGDRGETGAVGAPGAP----GPPGSPGPAGPTGKQGDRGEAGAQGPMGPSG 1101
Query: 62 VFGALGPIGPSSP 74
GA G GP P
Sbjct: 1102 PAGARGIQGPQGP 1114
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 38.1 bits (87), Expect = 0.015
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 11 SGAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGARVFGALGPIG 70
SG GP G RG PP P+ + P GP PR R+ P G GP G
Sbjct: 1085 SGPAGPSGPRG-PPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPG 1143
Query: 71 PSSPGLTLGGLA 82
P PG+ + A
Sbjct: 1144 PPGPGIDMSAFA 1155
Score = 34.3 bits (77), Expect = 0.21
Identities = 28/87 (32%), Positives = 34/87 (39%), Gaps = 25/87 (28%)
Query: 4 PRRAPYRSGAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGP--------------QPPRI 49
PR P +GA GP G +G P P S P PRGP +P +
Sbjct: 139 PRGPPGPAGAPGPQGFQGNPGEP----GEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKA 194
Query: 50 RARSAPPMEGARVFGALGPIGPSSPGL 76
R P +GAR F P +PGL
Sbjct: 195 GERGPPGPQGARGF-------PGTPGL 214
Score = 31.2 bits (69), Expect = 1.8
Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 4 PRRAPYRSGAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGARVF 63
PR P G+ GP G G P + A S P P P R P
Sbjct: 322 PRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQ------- 374
Query: 64 GALGPIGP 71
GA GP+GP
Sbjct: 375 GATGPLGP 382
Score = 30.0 bits (66), Expect = 4.0
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 7 APYRSGAGGPLGGRGRPPR-----PLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGAR 61
+P +G+ GP+G RG P P R P GP P + P GA
Sbjct: 244 SPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGP-VGPAGGPGFPGAP 302
Query: 62 VFGALGPIGPS 72
GA G GP+
Sbjct: 303 --GAKGEAGPT 311
Score = 29.3 bits (64), Expect = 6.9
Identities = 25/73 (34%), Positives = 27/73 (36%), Gaps = 10/73 (13%)
Query: 8 PYRSGAGGPLGGRGR------PPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGAR 61
P R GA G G RG P P PA P G Q R A + PM +
Sbjct: 977 PGRDGAAGVKGDRGETGAVGAPGAP----GPPGSPGPAGPTGKQGDRGEAGAQGPMGPSG 1032
Query: 62 VFGALGPIGPSSP 74
GA G GP P
Sbjct: 1033 PAGARGIQGPQGP 1045
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 37.0 bits (84), Expect = 0.033
Identities = 26/73 (35%), Positives = 29/73 (39%), Gaps = 13/73 (17%)
Query: 3 RPRRAPYRSGAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGARV 62
RP G GPL PP PL + P +PRGP PP R PP
Sbjct: 328 RPPIVGGNKGRSGPL-----PPVPLGIAPP-----PPTPRGPPPP---GRGGPPPPPPPA 374
Query: 63 FGALGPIGPSSPG 75
G GP+ P PG
Sbjct: 375 TGRSGPLPPPPPG 387
Score = 30.8 bits (68), Expect = 2.4
Identities = 27/75 (36%), Positives = 28/75 (37%), Gaps = 12/75 (16%)
Query: 14 GGPLGGRGRPPRPLVVRAVRSRSWPASPRG----PQPPRIRARSAPPMEGARVFGALGPI 69
G P GRG PP P RS P P G P PP PP G GP
Sbjct: 358 GPPPPGRGGPPPPPPPATGRSGPLPPPPPGAGGPPMPPPPPPPPPPPSSGN------GPA 411
Query: 70 GPSSPG--LTLGGLA 82
P P + GGLA
Sbjct: 412 PPPLPPALVPAGGLA 426
>gi|239757414 PREDICTED: hypothetical protein XP_002345432 [Homo
sapiens]
Length = 176
Score = 36.2 bits (82), Expect = 0.056
Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 10 RSGAGGPLGGRGR-PPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPP-MEGARVFGALG 67
R G GGP G R P P VR PRGPQP AR PP GA+
Sbjct: 103 RPGGGGPCQGSARFSPDPAAVRP--------QPRGPQPDSGSARQVPPDSRGAQALHRGA 154
Query: 68 PIGPSSP 74
P+ +P
Sbjct: 155 PLASPAP 161
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 35.8 bits (81), Expect = 0.074
Identities = 26/65 (40%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 12 GAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGARVF-GALGPIG 70
G+ GP G RG P P A P + QP A AP + GA F GA GP G
Sbjct: 362 GSEGPQGVRGEPGPPGPAGAAGPAGNPGADG--QPGAKGANGAPGIAGAPGFPGARGPSG 419
Query: 71 PSSPG 75
P PG
Sbjct: 420 PQGPG 424
Score = 34.7 bits (78), Expect = 0.16
Identities = 25/65 (38%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 11 SGAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGARVFGALGPIG 70
SGA GP G RG PP + P GP PR R A P+ G GP G
Sbjct: 1132 SGASGPAGPRG-PPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPG 1190
Query: 71 PSSPG 75
P S G
Sbjct: 1191 PPSAG 1195
Score = 32.7 bits (73), Expect = 0.62
Identities = 29/82 (35%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 4 PRRAPYRSGAGGPLGGRGRPPRPLV-----VRAVRSRSWPASPRGPQPPRIRARSA--PP 56
P P GA GP+G RG P P R P GPQ R +A P
Sbjct: 204 PPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPG 263
Query: 57 MEGARVF----GALGPIGPSSP 74
M+G R F GA G GP+ P
Sbjct: 264 MKGHRGFSGLDGAKGDAGPAGP 285
Score = 31.6 bits (70), Expect = 1.4
Identities = 22/70 (31%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Query: 7 APYRSGAGGPLGGRGR--PPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGARVFG 64
+P R G+ G G RG P P P P G R A P G
Sbjct: 1023 SPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVG 1082
Query: 65 ALGPIGPSSP 74
A GP GP P
Sbjct: 1083 ARGPAGPQGP 1092
Score = 30.8 bits (68), Expect = 2.4
Identities = 31/89 (34%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 4 PRRAPYRSGAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGPQ-PPRIRARSAPPMEGARV 62
PR P GA GP G +G P P S P PRGP PP + R
Sbjct: 186 PRGLPGPPGAPGPQGFQGPPGEP----GEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRP 241
Query: 63 FGALGPIGPSS----PGLTLGGLAVSEHR 87
G GP GP PG T G + HR
Sbjct: 242 -GERGPPGPQGARGLPG-TAGLPGMKGHR 268
Score = 30.8 bits (68), Expect = 2.4
Identities = 25/76 (32%), Positives = 29/76 (38%), Gaps = 14/76 (18%)
Query: 7 APYRSGAGGPLGGRGRP--------PRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPME 58
+P +GA G +G RG P P P R + A P GP P P
Sbjct: 291 SPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGP----AGPPGFP 346
Query: 59 GARVFGALGPIGPSSP 74
GA GA G GP P
Sbjct: 347 GA--VGAKGEAGPQGP 360
Score = 29.3 bits (64), Expect = 6.9
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 7 APYRSGAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGARVFGAL 66
AP G+ G G +G P R P RG P+ A +P +G R G
Sbjct: 714 APGAPGSQGAPGLQGMPGE----RGAAGLPGPKGDRGDAGPK-GADGSPGKDGVR--GLT 766
Query: 67 GPIGPSSP 74
GPIGP P
Sbjct: 767 GPIGPPGP 774
>gi|17511255 poly(A) binding protein interacting protein 1 isoform
1 [Homo sapiens]
Length = 479
Score = 35.8 bits (81), Expect = 0.074
Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 12/70 (17%)
Query: 12 GAGGPLGG---RGRPPRPLVVRAVRSRSWPASPRGP---QPPRIRARSAPPMEGARVFGA 65
G GGP GG G P A R+R P P+ P QPP +R P GA+
Sbjct: 22 GGGGPEGGGFPNGAGP------AERARHQPPQPKAPGFLQPPPLRQPRTTPPPGAQCEVP 75
Query: 66 LGPIGPSSPG 75
P PS PG
Sbjct: 76 ASPQRPSRPG 85
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 35.4 bits (80), Expect = 0.096
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 12 GAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGARVFGALGPIGP 71
GA G GGRG P +P R + P PRG + PR P + G GP G
Sbjct: 892 GANGEKGGRGTPGKP----GPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGE 947
Query: 72 SSP 74
P
Sbjct: 948 RGP 950
Score = 33.5 bits (75), Expect = 0.37
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 13 AGGP-LGGRGRPPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGARVFGALGPIG- 70
AG P L G G PP P R + S P+ GP P + P +G + G+ GP+G
Sbjct: 1290 AGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGP----KGPPGDDGPK--GSPGPVGF 1343
Query: 71 PSSPG 75
P PG
Sbjct: 1344 PGDPG 1348
>gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo
sapiens]
Length = 177
Score = 35.4 bits (80), Expect = 0.096
Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 1 MVRPRRAPYRSGAGGPLGGRGRPPRPLVVRAV---RSRSWPASPRGPQPPRIR-----AR 52
+ P P S + P+ R PPRP+ A R P SP GP P R R R
Sbjct: 64 LAAPSLVPNASASPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRARPLGAPGR 123
Query: 53 SAPP 56
SAPP
Sbjct: 124 SAPP 127
>gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo
sapiens]
Length = 177
Score = 35.4 bits (80), Expect = 0.096
Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 1 MVRPRRAPYRSGAGGPLGGRGRPPRPLVVRAV---RSRSWPASPRGPQPPRIR-----AR 52
+ P P S + P+ R PPRP+ A R P SP GP P R R R
Sbjct: 64 LAAPSLVPNASASPRPVSCRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRARPLGAPGR 123
Query: 53 SAPP 56
SAPP
Sbjct: 124 SAPP 127
>gi|5032099 smoothened [Homo sapiens]
Length = 787
Score = 35.0 bits (79), Expect = 0.13
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 3/88 (3%)
Query: 12 GAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGARVFGALGPIGP 71
G G G P P RS A+ GP PP A P E R LG + P
Sbjct: 27 GRGAASSGNATGPGPRSAGGSARRS--AAVTGPPPPLSHCGRAAPCEPLRYNVCLGSVLP 84
Query: 72 -SSPGLTLGGLAVSEHRLSNKLLAWSGV 98
+ L G + S+ KL+ WSG+
Sbjct: 85 YGATSTLLAGDSDSQEEAHGKLVLWSGL 112
>gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 35.0 bits (79), Expect = 0.13
Identities = 38/124 (30%), Positives = 52/124 (41%), Gaps = 11/124 (8%)
Query: 10 RSGAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGPQPPRIRAR-SAPPMEGARVFGALGP 68
R + GP GG G + A++ R PA P P P + AR S+PP + P
Sbjct: 78 RRRSPGPQGGGGGDIASPLPPALQPRGAPAVPAAPSPGPLPARPSSPPPRPSL------P 131
Query: 69 IGPSSPGLTLGGLAVSEHRLSNKLLAWSGVLEWQEKRRPYSDSTAKLKRTLPCQAYVNQG 128
GP P L LA L+ L S V ++++RP S A L V+ G
Sbjct: 132 SGPHRPVLPPSALAAPRPPLARPLPQGS-VTAREQEQRPRSRRRAGAPEAL---GPVHAG 187
Query: 129 ENLE 132
+LE
Sbjct: 188 SDLE 191
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 35.0 bits (79), Expect = 0.13
Identities = 31/87 (35%), Positives = 35/87 (40%), Gaps = 20/87 (22%)
Query: 4 PRRAPYRSGAGGPLG--------GRGRPPRPLVVRAVRSRSWPASPRGPQ-PPRIRARSA 54
PR P GA G G G G P RP R P P GP PP + R
Sbjct: 169 PRGFPGEKGAPGVPGMNGQKGEMGYGAPGRP----GERGLPGPQGPTGPSGPPGVGKRGE 224
Query: 55 ------PPMEGARVF-GALGPIGPSSP 74
P ++G R F G +GPIGP P
Sbjct: 225 NGVPGQPGIKGDRGFPGEMGPIGPPGP 251
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 35.0 bits (79), Expect = 0.13
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 3 RPRRAPYRSG---AGGPLGGRGRPPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEG 59
+P+ P + G G P G+ + P P ++ RS P P+GP P + + PP G
Sbjct: 56 KPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGKPQGPPPQGG 115
Query: 60 ARVFGALGPIGPSSPGLTLG 79
+ P GP PG G
Sbjct: 116 NK------PQGPPPPGKPQG 129
>gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 34.7 bits (78), Expect = 0.16
Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 10 RSGAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGPQPPRIRAR-SAPPMEGARVFGALGP 68
R + GP GG G + A++ R PA P P P + AR S+PP + P
Sbjct: 78 RRRSPGPQGGGGGDIASPLPPALQPRGAPAVPAAPSPGPLPARPSSPPPRPSL------P 131
Query: 69 IGPSSPGLTLGGLAVSEHRLSNKLLAWSGVLEWQEKR 105
GP P L LA L+ L S QE+R
Sbjct: 132 SGPHRPVLPPSALAAPRPPLARPLPQGSVTAREQEQR 168
>gi|169207534 PREDICTED: hypothetical protein [Homo sapiens]
Length = 183
Score = 33.9 bits (76), Expect = 0.28
Identities = 26/71 (36%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 4 PRRAPYRSGAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGARVF 63
PR +P R PL R RP + RA R P SP P PP R PP R+
Sbjct: 67 PRASPDRPRPSCPLASPDRR-RPAIPRASPDRPRPISPAPPGPPTSR---QPP----RIS 118
Query: 64 GALGPIGPSSP 74
A P+ P+ P
Sbjct: 119 VAAAPVLPAPP 129
>gi|239745038 PREDICTED: hypothetical protein XP_002343338 [Homo
sapiens]
Length = 244
Score = 33.9 bits (76), Expect = 0.28
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 4 PRRAPYRSGAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGARVF 63
PR + R PL R R RP + RA R P SP P PP R + R+
Sbjct: 67 PRASQDRPRPSCPLASRDRR-RPAIPRASPDRPRPISPAPPGPPTSR-------QSPRIS 118
Query: 64 GALGPIGPSSP 74
A P+ P++P
Sbjct: 119 VAAAPVLPAAP 129
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 33.9 bits (76), Expect = 0.28
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 4 PRRAPYRSGAGGP--LGGR--GRPPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEG 59
P+ P RS P L GR G PP+ ++ SR+ P P+ P++ A P ++
Sbjct: 93 PQTPPGRSPLQAPSRLAGRAEGSPPQRYILGIASSRTKPTLDETPENPQLEAAQLPEVDT 152
Query: 60 ARVFGALGPIGPSSP 74
+ G P+ P P
Sbjct: 153 PQGPGTGAPLRPGLP 167
>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
Length = 1612
Score = 33.5 bits (75), Expect = 0.37
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 21/92 (22%)
Query: 2 VRPRRAPYRSGAGGPLGGRGRP--PRPLVVRAVRSRSWPASPRGPQPPRIRA-------- 51
+RP RAP R+ GP + P +P + + P P+ P PPR A
Sbjct: 1105 IRPSRAPSRTP--GPPSAQSSPIDAQPATPLPQKDPAQPLEPKRPPPPRPVAPPTRPAPP 1162
Query: 52 RSAPPMEGAR-------VFGALGPIGPSSPGL 76
+ PP GAR FG +G P SPG+
Sbjct: 1163 QRPPPPSGARSPAPTRKEFGGIG--APPSPGV 1192
>gi|237757308 synaptojanin 1 isoform b [Homo sapiens]
Length = 1350
Score = 33.5 bits (75), Expect = 0.37
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 21/92 (22%)
Query: 2 VRPRRAPYRSGAGGPLGGRGRP--PRPLVVRAVRSRSWPASPRGPQPPRIRA-------- 51
+RP RAP R+ GP + P +P + + P P+ P PPR A
Sbjct: 1105 IRPSRAPSRTP--GPPSAQSSPIDAQPATPLPQKDPAQPLEPKRPPPPRPVAPPTRPAPP 1162
Query: 52 RSAPPMEGAR-------VFGALGPIGPSSPGL 76
+ PP GAR FG +G P SPG+
Sbjct: 1163 QRPPPPSGARSPAPTRKEFGGIG--APPSPGV 1192
>gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo
sapiens]
Length = 229
Score = 33.5 bits (75), Expect = 0.37
Identities = 27/71 (38%), Positives = 30/71 (42%), Gaps = 12/71 (16%)
Query: 10 RSGAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGARVFGALGPI 69
R+ G P GG PP P RSR P GP PPR SA +G + GP
Sbjct: 37 RTTQGRPAGGASPPPSP------RSR-----PEGPGPPRPATPSARRPQGLSAGVSAGPA 85
Query: 70 GPSSPGLTLGG 80
S P L L G
Sbjct: 86 QRSRP-LQLAG 95
>gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo
sapiens]
Length = 229
Score = 33.5 bits (75), Expect = 0.37
Identities = 27/71 (38%), Positives = 30/71 (42%), Gaps = 12/71 (16%)
Query: 10 RSGAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGARVFGALGPI 69
R+ G P GG PP P RSR P GP PPR SA +G + GP
Sbjct: 37 RTTQGRPAGGASPPPSP------RSR-----PEGPGPPRPATPSARRPQGLSAGVSAGPA 85
Query: 70 GPSSPGLTLGG 80
S P L L G
Sbjct: 86 QRSRP-LQLAG 95
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 33.1 bits (74), Expect = 0.48
Identities = 23/63 (36%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 12 GAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGARVFGALGPIGP 71
G GP G G P R V R P SP GP + PP G GP GP
Sbjct: 513 GPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSD---GKPGPPGSQGE-SGRPGPPGP 568
Query: 72 SSP 74
S P
Sbjct: 569 SGP 571
Score = 32.3 bits (72), Expect = 0.81
Identities = 26/71 (36%), Positives = 28/71 (39%), Gaps = 14/71 (19%)
Query: 12 GAGGPLGGRGRP--------PRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGARVF 63
GA G G RG P P P + PA PRGP P S PP +
Sbjct: 1101 GAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGP-----SGPPGKDG-TS 1154
Query: 64 GALGPIGPSSP 74
G GPIGP P
Sbjct: 1155 GHPGPIGPPGP 1165
Score = 31.6 bits (70), Expect = 1.4
Identities = 29/80 (36%), Positives = 30/80 (37%), Gaps = 15/80 (18%)
Query: 5 RRAPYRSGAGGPLG--------GRGRPPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPP 56
R AP G GGP G G PP P V+ R P P P R PP
Sbjct: 827 RGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKG--ERGSPGGPGAAGFPGARGLPGPP 884
Query: 57 MEGARVFGALGPIGPS-SPG 75
G GP GPS SPG
Sbjct: 885 GSN----GNPGPPGPSGSPG 900
>gi|239756566 PREDICTED: hypothetical protein [Homo sapiens]
Length = 214
Score = 33.1 bits (74), Expect = 0.48
Identities = 28/73 (38%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 18 GGRGRPP-RPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGARVFGALGPIGPSSPGL 76
GG GRP R V R R P PRG P + +A P G R GA G +G + G
Sbjct: 128 GGGGRPSHRAAAVDQGRPR--PRVPRGQPLPGLHPSAAAPGVGGRASGAGGLLGEGAAG- 184
Query: 77 TLGGLAVSEHRLS 89
GG A H S
Sbjct: 185 --GGGAHLRHSCS 195
>gi|169204821 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 33.1 bits (74), Expect = 0.48
Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 12 GAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGAR-VFGALGPIG 70
GAG GR RP RP + WP SPR P R +APP G+R + G
Sbjct: 79 GAGALPAGRRRPDRPRP-----APPWPLSPRPSHLPS-RVSAAPPPAGSRGLLETQDTSG 132
Query: 71 PSSPG 75
+SPG
Sbjct: 133 FASPG 137
>gi|169205432 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 33.1 bits (74), Expect = 0.48
Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 12 GAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGAR-VFGALGPIG 70
GAG GR RP RP + WP SPR P R +APP G+R + G
Sbjct: 79 GAGALPAGRRRPDRPRP-----APPWPLSPRPSHLPS-RVSAAPPPAGSRGLLETQDTSG 132
Query: 71 PSSPG 75
+SPG
Sbjct: 133 FASPG 137
>gi|169204105 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 33.1 bits (74), Expect = 0.48
Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 12 GAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGPQPPRIRARSAPPMEGAR-VFGALGPIG 70
GAG GR RP RP + WP SPR P R +APP G+R + G
Sbjct: 79 GAGALPAGRRRPDRPRP-----APPWPLSPRPSHLPS-RVSAAPPPAGSRGLLETQDTSG 132
Query: 71 PSSPG 75
+SPG
Sbjct: 133 FASPG 137
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 32.7 bits (73), Expect = 0.62
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 9 YRSGAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGPQPPRI--RARSAPPMEGARVFGAL 66
+RSG P R PPRP V S P P P+P + R +PP+ G +
Sbjct: 157 HRSGPPEPQRNRMPPPRPDVGSKPDSIP-PPVPSTPRPIQSSPHNRGSPPVPGGPRQPSP 215
Query: 67 GPIGPSSP---GLTLGGLAVSEHRLSN 90
GP P P G LGG ++ + LS+
Sbjct: 216 GPTPPPFPGNRGTALGGGSIRQSPLSS 242
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,921,704
Number of Sequences: 37866
Number of extensions: 938443
Number of successful extensions: 4580
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 149
Number of HSP's that attempted gapping in prelim test: 4146
Number of HSP's gapped (non-prelim): 516
length of query: 416
length of database: 18,247,518
effective HSP length: 105
effective length of query: 311
effective length of database: 14,271,588
effective search space: 4438463868
effective search space used: 4438463868
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.