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Search of human proteins with 33667089
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|33667089 ligand dependent nuclear receptor corepressor-like
[Homo sapiens]
(318 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|33667089 ligand dependent nuclear receptor corepressor-like [... 640 0.0
gi|39930473 ligand dependent nuclear receptor corepressor [Homo ... 55 6e-08
gi|53828703 POTE ankyrin domain family, member A isoform 2 [Homo... 35 0.067
gi|50897294 POTE ankyrin domain family, member A isoform 1 [Homo... 35 0.088
gi|22325364 ubiquitin associated protein 2 [Homo sapiens] 35 0.11
gi|12751477 forkhead box L2 [Homo sapiens] 33 0.26
gi|24308171 zinc finger protein 280C [Homo sapiens] 33 0.33
gi|16579828 zinc finger protein 91 [Homo sapiens] 33 0.33
gi|239751535 PREDICTED: hypothetical protein [Homo sapiens] 33 0.44
gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo ... 33 0.44
gi|115527097 CDC42-binding protein kinase beta [Homo sapiens] 32 0.57
gi|148746211 NK2 transcription factor related, locus 3 [Homo sap... 31 1.3
gi|18702331 OTU domain containing 7A [Homo sapiens] 31 1.3
gi|224591419 zinc finger and BTB domain containing 8B [Homo sapi... 31 1.7
gi|7661892 REST corepressor 1 [Homo sapiens] 31 1.7
gi|169209173 PREDICTED: hypothetical protein [Homo sapiens] 31 1.7
gi|113425821 PREDICTED: hypothetical protein [Homo sapiens] 31 1.7
gi|113425445 PREDICTED: hypothetical protein [Homo sapiens] 31 1.7
gi|239741673 PREDICTED: protein immuno-reactive with anti-PTH po... 31 1.7
gi|212549782 caspase 8 associated protein 2 [Homo sapiens] 31 1.7
gi|6912288 caspase 8 associated protein 2 [Homo sapiens] 31 1.7
gi|212549532 caspase 8 associated protein 2 [Homo sapiens] 31 1.7
gi|45356743 SET domain-containing 8 [Homo sapiens] 31 1.7
gi|218505787 protocadherin 15 isoform CD2-1 precursor [Homo sapi... 31 1.7
gi|98961138 ZXD family zinc finger C isoform 2 [Homo sapiens] 31 1.7
gi|98961133 ZXD family zinc finger C isoform 1 [Homo sapiens] 31 1.7
gi|29789072 zinc finger, ZZ-type containing 3 [Homo sapiens] 31 1.7
gi|54633319 PDZ domain-containing guanine nucleotide exchange fa... 30 2.2
gi|239741684 PREDICTED: ankyrin repeat domain 36 [Homo sapiens] 30 2.2
gi|27436887 pre-B-cell leukemia homeobox 2 [Homo sapiens] 30 2.2
>gi|33667089 ligand dependent nuclear receptor corepressor-like
[Homo sapiens]
Length = 318
Score = 640 bits (1651), Expect = 0.0
Identities = 318/318 (100%), Positives = 318/318 (100%)
Query: 1 MDKGRERMAAAAAAAAAAAAAAQCRSPRCAAERRGFRRELDSWRHRLMHCVGFESILEGL 60
MDKGRERMAAAAAAAAAAAAAAQCRSPRCAAERRGFRRELDSWRHRLMHCVGFESILEGL
Sbjct: 1 MDKGRERMAAAAAAAAAAAAAAQCRSPRCAAERRGFRRELDSWRHRLMHCVGFESILEGL 60
Query: 61 YGPRLRRDLSLFEDCEPEELTDWSMDEKCSFCNLQREAVSDCIPSLDSSQSTPTEELSSQ 120
YGPRLRRDLSLFEDCEPEELTDWSMDEKCSFCNLQREAVSDCIPSLDSSQSTPTEELSSQ
Sbjct: 61 YGPRLRRDLSLFEDCEPEELTDWSMDEKCSFCNLQREAVSDCIPSLDSSQSTPTEELSSQ 120
Query: 121 GQSNTDKIECQAENYLNALFRKKDLPQNCDPNIPLVAQELMKKMIRQFAIEYISKSGKTQ 180
GQSNTDKIECQAENYLNALFRKKDLPQNCDPNIPLVAQELMKKMIRQFAIEYISKSGKTQ
Sbjct: 121 GQSNTDKIECQAENYLNALFRKKDLPQNCDPNIPLVAQELMKKMIRQFAIEYISKSGKTQ 180
Query: 181 ENRNGSIGPSIVCKSIQMNQAENSLQEEQEGPLDLTVNRMQEQNTQQGDGVLDLSTKKTS 240
ENRNGSIGPSIVCKSIQMNQAENSLQEEQEGPLDLTVNRMQEQNTQQGDGVLDLSTKKTS
Sbjct: 181 ENRNGSIGPSIVCKSIQMNQAENSLQEEQEGPLDLTVNRMQEQNTQQGDGVLDLSTKKTS 240
Query: 241 IKSEESSICDPSSENSVAGMLQVKTDEKLNVSDENTASCPLSPIKMCLNRPIEWNLNLTT 300
IKSEESSICDPSSENSVAGMLQVKTDEKLNVSDENTASCPLSPIKMCLNRPIEWNLNLTT
Sbjct: 241 IKSEESSICDPSSENSVAGMLQVKTDEKLNVSDENTASCPLSPIKMCLNRPIEWNLNLTT 300
Query: 301 ASLTSCTVHNQNLKSEEK 318
ASLTSCTVHNQNLKSEEK
Sbjct: 301 ASLTSCTVHNQNLKSEEK 318
>gi|39930473 ligand dependent nuclear receptor corepressor [Homo
sapiens]
Length = 433
Score = 55.5 bits (132), Expect = 6e-08
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 13/108 (12%)
Query: 161 MKKMIRQFAIEYISKSGKTQE------NRNGS------IGPSIVCKSIQMNQAENSLQEE 208
M++MI+QFA EY SK+ TQ+ +N S + S + Q L +
Sbjct: 1 MQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMAD 60
Query: 209 QEGPLDLTVNRMQEQNTQQGDGVLDLSTKKTSIKSEESSICDPSSENS 256
Q+ PLDLTV + Q + ++Q DGVLDLSTKK+ S P ++
Sbjct: 61 QDSPLDLTVRKSQSEPSEQ-DGVLDLSTKKSPCAGSTSLSHSPGCSST 107
>gi|53828703 POTE ankyrin domain family, member A isoform 2 [Homo
sapiens]
Length = 498
Score = 35.4 bits (80), Expect = 0.067
Identities = 37/204 (18%), Positives = 83/204 (40%), Gaps = 5/204 (2%)
Query: 65 LRRDLSLF-EDCEPEELTDWSMDEKCSF-CNLQREAVSDCIPSLDSSQSTPTEELSSQGQ 122
L++++ +F +D + D+++ S C L + + +P+ S S P ++L +
Sbjct: 251 LQQNIDVFSQDVFGQTAEDYAVSSHHSIICQLLSDYKENQMPNNSSGNSNPEQDLKLTSE 310
Query: 123 SNTDKIECQAENYLNALFRKKDLPQNCDPNIPLVAQELMKKMIRQFAIEYISKSGKTQEN 182
+++ + + ++ D+ ++CD V +E+ K + G N
Sbjct: 311 EEPQRLKGSENSQHEKVTQEPDINKDCDRE---VEEEMQKHGSNNVGLSENLTDGAAAGN 367
Query: 183 RNGSIGPSIVCKSIQMNQAENSLQEEQEGPLDLTVNRMQEQNTQQGDGVLDLSTKKTSIK 242
+G + P + + Q N+ EE P + + + ++ LD T + I
Sbjct: 368 GDGGLVPQRKSRKHENQQFPNTEIEEYHRPEKKSNEKNKVKSQIHSVDNLDDITWPSEIA 427
Query: 243 SEESSICDPSSENSVAGMLQVKTD 266
SE+ + + E + Q+K D
Sbjct: 428 SEDYDLLFSNYETFTLLIEQLKMD 451
>gi|50897294 POTE ankyrin domain family, member A isoform 1 [Homo
sapiens]
Length = 452
Score = 35.0 bits (79), Expect = 0.088
Identities = 33/183 (18%), Positives = 71/183 (38%), Gaps = 3/183 (1%)
Query: 84 SMDEKCSFCNLQREAVSDCIPSLDSSQSTPTEELSSQGQSNTDKIECQAENYLNALFRKK 143
++D C L + + +P+ S S P ++L + +++ + + ++
Sbjct: 226 ALDRFGRICQLLSDYKENQMPNNSSGNSNPEQDLKLTSEEEPQRLKGSENSQHEKVTQEP 285
Query: 144 DLPQNCDPNIPLVAQELMKKMIRQFAIEYISKSGKTQENRNGSIGPSIVCKSIQMNQAEN 203
D+ ++CD V +E+ K + G N +G + P + + Q N
Sbjct: 286 DINKDCDRE---VEEEMQKHGSNNVGLSENLTDGAAAGNGDGGLVPQRKSRKHENQQFPN 342
Query: 204 SLQEEQEGPLDLTVNRMQEQNTQQGDGVLDLSTKKTSIKSEESSICDPSSENSVAGMLQV 263
+ EE P + + + ++ LD T + I SE+ + + E + Q+
Sbjct: 343 TEIEEYHRPEKKSNEKNKVKSQIHSVDNLDDITWPSEIASEDYDLLFSNYETFTLLIEQL 402
Query: 264 KTD 266
K D
Sbjct: 403 KMD 405
>gi|22325364 ubiquitin associated protein 2 [Homo sapiens]
Length = 1119
Score = 34.7 bits (78), Expect = 0.11
Identities = 48/236 (20%), Positives = 101/236 (42%), Gaps = 35/236 (14%)
Query: 104 PSLDSSQSTP-TEELSSQGQSNTDKIECQAENYLNALFRKKDLPQNCDPNIPLVAQELMK 162
PSL +TP T++ S+ + T + + +++ D +P+ P+++Q +
Sbjct: 383 PSLGQFTTTPSTQQNSTSHPTTTTSWDLKPPTSQSSVLSHLDFKSQPEPS-PVLSQLSQR 441
Query: 163 KMIRQFAI-------EYISKSGKTQENRNGSIGPSIVCKSIQMNQA--ENSLQEEQEGPL 213
+ + A+ E K +E+ G PS V K +Q+ EN +
Sbjct: 442 QQHQSQAVTVPPPGLESFPSQAKLRESTPGD-SPSTVNKLLQLPSTTIEN---------I 491
Query: 214 DLTVNRMQEQNTQQGDGVLDLSTKKTSIKSEESSICDPSSENSVAGMLQVKTDEKLNV-- 271
++V++ Q ++ + + ++K + E D + N G L+ ++ L+
Sbjct: 492 SVSVHQPQPKHIKLAKRRIPPASKIPASAVEMPGSADVTGLNVQFGALEFGSEPSLSEFG 551
Query: 272 ---SDENTASCPLSPIKMCLNRPIEWNLNL---------TTASLTSCTVHNQNLKS 315
S EN+ P+S L+ P+ +L++ TT+ +TSC++ + +L S
Sbjct: 552 SAPSSENSNQIPISLYSKSLSEPLNTSLSMTSAVQNSTYTTSVITSCSLTSSSLNS 607
>gi|12751477 forkhead box L2 [Homo sapiens]
Length = 376
Score = 33.5 bits (75), Expect = 0.26
Identities = 20/29 (68%), Positives = 22/29 (75%)
Query: 7 RMAAAAAAAAAAAAAAQCRSPRCAAERRG 35
+MAAAAAAAAAAAAAA SP AA +G
Sbjct: 219 QMAAAAAAAAAAAAAAGPGSPGAAAVVKG 247
>gi|24308171 zinc finger protein 280C [Homo sapiens]
Length = 737
Score = 33.1 bits (74), Expect = 0.33
Identities = 54/254 (21%), Positives = 96/254 (37%), Gaps = 43/254 (16%)
Query: 71 LFEDCEPEELTDWSM---------DEKCSFCNLQREAVSDCIPSLDSSQSTPTEELSSQG 121
LF +CE EEL W D++ F +S P++ + + SS+G
Sbjct: 18 LFMECEEEELEPWQKKVEETQDEDDDELIFVG----EISSSKPAISNILNRGHSSSSSKG 73
Query: 122 QSNTDKIECQAENYLNALFRKKDLPQN---CDPNIPLVAQELMKKMIRQFAIEYISKSGK 178
+ E + A R +D P N P LV++ + +E SK
Sbjct: 74 IKSEPHSPGIPEIFRTASQRCRDPPSNPVAASPRFHLVSKSSQSSV----TVENASKPDF 129
Query: 179 TQENRNGSIGPSIVCKSIQMNQAENSLQEEQEGPLDLTVNRMQEQNT-----QQGDGVLD 233
T+ ++ GS SI + + + SL Q+ P + R +NT ++
Sbjct: 130 TKNSQVGSDNSSI----LLFDSTQESLPPSQDIP---AIFREGMKNTSYVLKHPSTSKVN 182
Query: 234 LSTKKTSIKSEESSICDPSSENSVAGMLQVKTDEKLNVSDENTAS-----------CPLS 282
T K SE+ +PS+ + G V + + + NT+S CP
Sbjct: 183 SVTPKKPKTSEDVPQINPSTSLPLIGSPPVTSSQVMLSKGTNTSSPYDAGADYLRACPKC 242
Query: 283 PIKMCLNRPIEWNL 296
++ L P+++++
Sbjct: 243 NVQFNLLDPLKYHM 256
>gi|16579828 zinc finger protein 91 [Homo sapiens]
Length = 570
Score = 33.1 bits (74), Expect = 0.33
Identities = 60/245 (24%), Positives = 96/245 (39%), Gaps = 49/245 (20%)
Query: 4 GRERMAAAAAAAAAAAAAAQCRSPRCAAERRGFRRELDSWR-----HRLMHCVGFESILE 58
GR+R AAAAAAAAA S R AE RR S R + S ++
Sbjct: 53 GRDRGRAAAAAAAAAV------SRRRKAEYPRRRRSSPSARPPDVPGQQPQAAKSPSPVQ 106
Query: 59 GLYGPRLRRDLSLFEDCEP----EELTDWSMDEKCSFC--------NLQREAVS---DCI 103
G PRL + D +P EE D ++ ++ S R +VS D
Sbjct: 107 GKKSPRLLCIEKVTTDKDPKEEKEEEDDSALPQEVSIAASRPSRGWRSSRTSVSRHRDTE 166
Query: 104 PSLDSSQSTPTEELSSQGQSNTDKI----------------ECQAENYLNALFRKKDLPQ 147
+ S T + +L + + NTD++ E + E L ++++P
Sbjct: 167 NTRSSRSKTGSLQLICKSEPNTDQLDYDVGEEHQSPGGISSEEEEEEEEEMLISEEEIPF 226
Query: 148 NCDPNIPLVAQELMKKMIRQFAIEYISKSGKTQENRNGSIGPSIVCKSIQMNQAENSLQE 207
DP E K + + + KSGK +E + V +++ + EN ++E
Sbjct: 227 KDDPR-----DETYKPHLERETPKPRRKSGKVKEEKEKK--EIKVEVEVEVKEEENEIRE 279
Query: 208 EQEGP 212
++E P
Sbjct: 280 DEEPP 284
>gi|239751535 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 32.7 bits (73), Expect = 0.44
Identities = 19/37 (51%), Positives = 19/37 (51%)
Query: 4 GRERMAAAAAAAAAAAAAAQCRSPRCAAERRGFRREL 40
GR R A A AA A A R PR A RRG RR L
Sbjct: 189 GRSRSAFVAGRDAALACAQLPRRPRGAGARRGMRRRL 225
>gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo
sapiens]
Length = 255
Score = 32.7 bits (73), Expect = 0.44
Identities = 19/37 (51%), Positives = 19/37 (51%)
Query: 4 GRERMAAAAAAAAAAAAAAQCRSPRCAAERRGFRREL 40
GR R A A AA A A R PR A RRG RR L
Sbjct: 189 GRSRSAFVAGRDAALACAQLPRRPRGAGARRGMRRRL 225
>gi|115527097 CDC42-binding protein kinase beta [Homo sapiens]
Length = 1711
Score = 32.3 bits (72), Expect = 0.57
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 9/125 (7%)
Query: 202 ENSLQEEQEGPLDLTVNRMQEQNTQQGDGVLDLSTKKTSIKSEESSICD----PSSENSV 257
EN + L V+++ QN Q D + DL+ KK S+ E+ I + S E
Sbjct: 772 ENKKLTAENEKLCSFVDKLTAQNRQLEDELQDLAAKKESVAHWEAQIAEIIQWVSDEKDA 831
Query: 258 AGMLQV----KTDEKLNVSDENTASCPLSPI-KMCLNRPIEWNLNLTTASLTSCTVHNQN 312
G LQ T+E + + S L P+ K+ ++ ++ + L S + +
Sbjct: 832 RGYLQALASKMTEELEALRSSSLGSRTLDPLWKVRRSQKLDMSARLELQSALEAEIRAKQ 891
Query: 313 LKSEE 317
L EE
Sbjct: 892 LVQEE 896
>gi|148746211 NK2 transcription factor related, locus 3 [Homo
sapiens]
Length = 364
Score = 31.2 bits (69), Expect = 1.3
Identities = 18/27 (66%), Positives = 18/27 (66%)
Query: 4 GRERMAAAAAAAAAAAAAAQCRSPRCA 30
G AAAAAAAAAAAAAA S CA
Sbjct: 268 GNSAAAAAAAAAAAAAAAAYSSSYGCA 294
>gi|18702331 OTU domain containing 7A [Homo sapiens]
Length = 926
Score = 31.2 bits (69), Expect = 1.3
Identities = 18/31 (58%), Positives = 19/31 (61%)
Query: 5 RERMAAAAAAAAAAAAAAQCRSPRCAAERRG 35
R R AA AAAAAAAAAAA + P E G
Sbjct: 672 RRRDAATAAAAAAAAAAATAKRPPRRPETEG 702
Score = 28.9 bits (63), Expect = 6.3
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 2 DKGRERMAAAAAAAAAAAAAAQCRSPR 28
++ R A AAAAAAAAAAA R PR
Sbjct: 670 EQRRRDAATAAAAAAAAAAATAKRPPR 696
>gi|224591419 zinc finger and BTB domain containing 8B [Homo
sapiens]
Length = 495
Score = 30.8 bits (68), Expect = 1.7
Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 21/131 (16%)
Query: 1 MDKGRERMAAAAAAAAAAAAAAQCRSPRCAAERRGFRRELDSWRHRLMHCVGFESILEGL 60
M+K AA AAAAAAAAAAA + + +E RE S + + S EG
Sbjct: 128 MEKEAAVAAAVAAAAAAAAAAAAAAAHQVDSESPSSGREGTSCGTKSL----VSSPAEGE 183
Query: 61 YGPRLRRDLSLFE--DCEPEELTDWSMDEKCSFCNLQREAVSDCIPSLDSSQSTPTEELS 118
R+ + DC P EL + R+++ S DS+ STP + +
Sbjct: 184 KSVECLRESPCGDCGDCHPLEL-------------VVRDSLGG--GSADSNLSTPPKRIE 228
Query: 119 SQGQSNTDKIE 129
+ + + D++E
Sbjct: 229 PKVEFDADEVE 239
>gi|7661892 REST corepressor 1 [Homo sapiens]
Length = 482
Score = 30.8 bits (68), Expect = 1.7
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 3 KGRERMAAAAAAAAA-AAAAAQCRSPRCAA 31
+GR AA+A+AAAA AAA+A C SP A
Sbjct: 13 RGRNNAAASASAAAASAAASAACASPAATA 42
>gi|169209173 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 30.8 bits (68), Expect = 1.7
Identities = 21/45 (46%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 7 RMAAAAAAAAAAAAAAQCRSPRCAAERRGFRRELDSWRHRLMHCV 51
R AAAAAA AA AA R P AA R RR + + HCV
Sbjct: 105 RSAAAAAANPAAGGAAPARQP--AASLRSLRRASRASGALVSHCV 147
>gi|113425821 PREDICTED: hypothetical protein [Homo sapiens]
Length = 162
Score = 30.8 bits (68), Expect = 1.7
Identities = 21/45 (46%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 7 RMAAAAAAAAAAAAAAQCRSPRCAAERRGFRRELDSWRHRLMHCV 51
R AAAAAA AA AA R P AA R RR + + HCV
Sbjct: 74 RSAAAAAANPAAGGAAPARQP--AASLRSLRRASRASGALVSHCV 116
>gi|113425445 PREDICTED: hypothetical protein [Homo sapiens]
Length = 162
Score = 30.8 bits (68), Expect = 1.7
Identities = 21/45 (46%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 7 RMAAAAAAAAAAAAAAQCRSPRCAAERRGFRRELDSWRHRLMHCV 51
R AAAAAA AA AA R P AA R RR + + HCV
Sbjct: 74 RSAAAAAANPAAGGAAPARQP--AASLRSLRRASRASGALVSHCV 116
>gi|239741673 PREDICTED: protein immuno-reactive with anti-PTH
polyclonal antibodies [Homo sapiens]
Length = 1430
Score = 30.8 bits (68), Expect = 1.7
Identities = 41/196 (20%), Positives = 75/196 (38%), Gaps = 21/196 (10%)
Query: 86 DEKCSFCNLQREAVSDCIPSLDSSQSTPTEELSSQGQSNTDKIECQAENYLNALFRKKDL 145
DEK SF N+ RE I SSQ P + +S + + I + ++ + +
Sbjct: 515 DEKDSFSNITREKKDGEISRTVSSQKPPALKATSDEEDSVLSIAREEKDGEKSRTVSSEQ 574
Query: 146 PQNCDPNIPLVAQELMKKMIRQFAIEYISKSGKTQENRNGSIGPSIVCKSIQMNQAENSL 205
P P + E + +Y K+ + ++ P++ S + N N
Sbjct: 575 P----PGLKATRDEKDSLLNIARGKKYGEKTRRVSSHKQ----PALKATSDKENSVPNMA 626
Query: 206 QEEQEGPLDLTVNRMQEQNTQQGDGVLDLSTKKTSIKSEESSICDPSSENSVAGMLQ--- 262
E ++ + TV ++Q+ + S KK S+ + + I D +V+ Q
Sbjct: 627 TETKDEQISGTV------SSQKQPALKATSDKKDSVSNIPTEIKDGQQSGTVSSQKQLAW 680
Query: 263 ----VKTDEKLNVSDE 274
VK D N++ E
Sbjct: 681 KATSVKKDSVSNIATE 696
>gi|212549782 caspase 8 associated protein 2 [Homo sapiens]
Length = 1982
Score = 30.8 bits (68), Expect = 1.7
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 224 NTQQGDGV---LDLSTKKTSIKSEESSICDPSSENSVAGMLQVKTDEKLNVSDENTASCP 280
N+ Q D V +DL+ +S E + + E+ G++QV D E A
Sbjct: 1727 NSLQADTVGAFIDLTQDASSEAKSEGNHPALAVEDLGCGVIQVDEDN----CKEEKAQVA 1782
Query: 281 LSPIKMCLNRPIEWNLNLTTASLTSCTVHNQNLKSE 316
P+K + E ++LTT S +SC V LKSE
Sbjct: 1783 NRPLKCIVE---ETYIDLTTESPSSCEVKKDELKSE 1815
>gi|6912288 caspase 8 associated protein 2 [Homo sapiens]
Length = 1982
Score = 30.8 bits (68), Expect = 1.7
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 224 NTQQGDGV---LDLSTKKTSIKSEESSICDPSSENSVAGMLQVKTDEKLNVSDENTASCP 280
N+ Q D V +DL+ +S E + + E+ G++QV D E A
Sbjct: 1727 NSLQADTVGAFIDLTQDASSEAKSEGNHPALAVEDLGCGVIQVDEDN----CKEEKAQVA 1782
Query: 281 LSPIKMCLNRPIEWNLNLTTASLTSCTVHNQNLKSE 316
P+K + E ++LTT S +SC V LKSE
Sbjct: 1783 NRPLKCIVE---ETYIDLTTESPSSCEVKKDELKSE 1815
>gi|212549532 caspase 8 associated protein 2 [Homo sapiens]
Length = 1982
Score = 30.8 bits (68), Expect = 1.7
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 224 NTQQGDGV---LDLSTKKTSIKSEESSICDPSSENSVAGMLQVKTDEKLNVSDENTASCP 280
N+ Q D V +DL+ +S E + + E+ G++QV D E A
Sbjct: 1727 NSLQADTVGAFIDLTQDASSEAKSEGNHPALAVEDLGCGVIQVDEDN----CKEEKAQVA 1782
Query: 281 LSPIKMCLNRPIEWNLNLTTASLTSCTVHNQNLKSE 316
P+K + E ++LTT S +SC V LKSE
Sbjct: 1783 NRPLKCIVE---ETYIDLTTESPSSCEVKKDELKSE 1815
>gi|45356743 SET domain-containing 8 [Homo sapiens]
Length = 352
Score = 30.8 bits (68), Expect = 1.7
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 143 KDLPQNCDPNIPLVAQELMKKMIRQFAIEYISKSGKTQENRN-GSIGPSIVCKSIQMNQA 201
K P +CD +A++ +KK I+ GKTQ+NR P V +S + ++A
Sbjct: 139 KTPPSSCDSTNAAIAKQALKKPIKGKQAPRKKAQGKTQQNRKLTDFYP--VRRSSRKSKA 196
Query: 202 ENSLQEEQEGPLDLTVNRMQEQNTQ----QGDGVLDLSTKKTS 240
E LQ E+ +D + +E+ + G G ++TK+ S
Sbjct: 197 E--LQSEERKRIDELIESGKEEGMKIDLIDGKGRGVIATKQFS 237
>gi|218505787 protocadherin 15 isoform CD2-1 precursor [Homo sapiens]
Length = 1790
Score = 30.8 bits (68), Expect = 1.7
Identities = 43/192 (22%), Positives = 77/192 (40%), Gaps = 17/192 (8%)
Query: 74 DCEPEELTDWSMDEKCSFCNL---QREAVSDCIPSLDSSQSTPTEELSSQGQ-SNTDKIE 129
D E EE +E + L Q EA + S + S S TE + + S ++ E
Sbjct: 1569 DLEGEEWQRRLEEEDKDYLKLTLDQEEATESTVESEEESSSDYTEYSEEESEFSESETTE 1628
Query: 130 CQAENYLNALFRKKDLPQNCDPNIPLVAQELMKKMI-----RQFAIEYISKSGKTQENRN 184
++E+ + + P++ + E +K I R E G+ +E
Sbjct: 1629 EESESETPSEEEESSTPESEESESTESEGEKARKNIVLARRRPMVEEVKEVKGRKEE--- 1685
Query: 185 GSIGPSIVCKSIQMNQAENSLQEEQEGPLDLTVNRMQEQNTQQGDGVLDLSTKKTSIKSE 244
P K +M + E+S +EE+ GP + + E +G + ++ + ++SE
Sbjct: 1686 ----PQEEQKEPKMEEEEHS-EEEESGPAPVEESTDPEAQDIPEEGSAESASVEGGVESE 1740
Query: 245 ESSICDPSSENS 256
E S SS +S
Sbjct: 1741 EESESGSSSSSS 1752
>gi|98961138 ZXD family zinc finger C isoform 2 [Homo sapiens]
Length = 710
Score = 30.8 bits (68), Expect = 1.7
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 95 QREAVSDCIPSLDSSQS-TPTEELSSQGQSNTDKIECQAENYLNALFRKKDLPQNCDPNI 153
Q D +P L++ S TP+ ELSS GQS ++ L ALF D P N +
Sbjct: 475 QHSRRQDLLPQLEAPSSLTPSSELSSPGQSELTNMD------LAALF--SDTPANASGSA 526
Query: 154 PLVAQELMKKMIRQFAIEYISKSGKTQENRNGSIGP 189
+ L ++ S G N S+GP
Sbjct: 527 GGSDEALNSGILTIDVTSVSSSLGGNLPANNSSLGP 562
>gi|98961133 ZXD family zinc finger C isoform 1 [Homo sapiens]
Length = 858
Score = 30.8 bits (68), Expect = 1.7
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 95 QREAVSDCIPSLDSSQS-TPTEELSSQGQSNTDKIECQAENYLNALFRKKDLPQNCDPNI 153
Q D +P L++ S TP+ ELSS GQS ++ L ALF D P N +
Sbjct: 475 QHSRRQDLLPQLEAPSSLTPSSELSSPGQSELTNMD------LAALF--SDTPANASGSA 526
Query: 154 PLVAQELMKKMIRQFAIEYISKSGKTQENRNGSIGP 189
+ L ++ S G N S+GP
Sbjct: 527 GGSDEALNSGILTIDVTSVSSSLGGNLPANNSSLGP 562
>gi|29789072 zinc finger, ZZ-type containing 3 [Homo sapiens]
Length = 903
Score = 30.8 bits (68), Expect = 1.7
Identities = 38/179 (21%), Positives = 63/179 (35%), Gaps = 11/179 (6%)
Query: 94 LQREAVSDCIPSLDSSQSTPTEELSSQGQSNTDKIECQAENYLNALFRK-KDLPQNCDPN 152
L E + SS EE+ G S+ K +C+ EN N L + +P + +P
Sbjct: 295 LTTEPATGPFSETQSSLRDSEEEVDVVGDSSASKEQCK-ENTNNELDTSLESMPASGEPE 353
Query: 153 IPLVAQELMKKMIRQFAIEYISKSGKTQENRNGSIGPSIVCKSIQMNQAENSLQEEQEGP 212
V + +M+ + QE+R + + +NS + G
Sbjct: 354 PSPVLDCVSAQMM---------SLSEPQEHRYTLRTSPRRAAPTRGSPTKNSSPYRENGQ 404
Query: 213 LDLTVNRMQEQNTQQGDGVLDLSTKKTSIKSEESSICDPSSENSVAGMLQVKTDEKLNV 271
+ E N D V T I E IC S N G+ + ++ +LN+
Sbjct: 405 FEENNLSPNETNATVSDNVSQSPTNPGEISQNEKGICCDSQNNGSEGVSKPPSEARLNI 463
>gi|54633319 PDZ domain-containing guanine nucleotide exchange
factor I [Homo sapiens]
Length = 1601
Score = 30.4 bits (67), Expect = 2.2
Identities = 36/179 (20%), Positives = 69/179 (38%), Gaps = 20/179 (11%)
Query: 94 LQREAVSDCIPSLDSSQSTPTEELSSQGQSNTDKIECQAENYLNALFRKKDLPQNCDPNI 153
LQRE IP+ S + + Q+ TD +E + L A K L +N P +
Sbjct: 129 LQRE-----IPARQSRRRFRKINYKGERQTITDDVEVNSYLSLPADLTKMHLTENPHPQV 183
Query: 154 PLVAQELMKKMIRQFAIEYISKSGKTQENRNGSIGPSIVCKSIQMNQAENSLQEEQEGPL 213
V+ S+SG + + +GS S + ++ + + L EGP+
Sbjct: 184 THVSS---------------SQSGCSIASDSGSSSLSDIYQATESEVGDVDLTRLPEGPV 228
Query: 214 DLTVNRMQEQNTQQGDGVLDLSTKKTSIKSEESSICDPSSENSVAGMLQVKTDEKLNVS 272
D + +++ + D + + ++ E + D E + M Q+ + +S
Sbjct: 229 DSEDDEEEDEEIDRTDPLQGRDLVRECLEKEPADKTDDDIEQLLEFMHQLPAFANMTMS 287
>gi|239741684 PREDICTED: ankyrin repeat domain 36 [Homo sapiens]
Length = 1524
Score = 30.4 bits (67), Expect = 2.2
Identities = 59/238 (24%), Positives = 90/238 (37%), Gaps = 46/238 (19%)
Query: 86 DEKCSFCNLQREAVSDCIPSLDSSQSTPT------EELSSQGQSNTDK-------IECQA 132
DEK SF N+ R I SSQ PT EE S G + +K + +
Sbjct: 515 DEKDSFSNITRGKKDGEISRKVSSQKPPTLKGTSDEEDSVLGIARENKDGEKSRTVSSEK 574
Query: 133 ENYLNALFRKKDLPQNC-----DPNIPLVAQELMKKMIRQFAIEYISKSGKTQENRNGSI 187
L A +KD N D K + + E S S T+E ++G I
Sbjct: 575 PPGLKASSAEKDSVLNIARGKKDGEKTKRVSSRKKPSLEATSDEKDSFSNITREKKDGEI 634
Query: 188 G--------PSIVCKSIQMNQAENSLQEEQEGPLDLTVNRMQ----EQNTQQGDGVLDLS 235
P++ S + + +E ++G TV+ + + + + D VL+++
Sbjct: 635 SRKVSSQKPPALKGTSDEEDSVLGIARENKDGEKSRTVSSEKPPGLKATSDEKDSVLNIA 694
Query: 236 T-KKTSIKSEESS---------ICDPSSENSVAGMLQVKTDEKLNVSDENTASCPLSP 283
KK K+ S ICD E+SV M K DE+++ T SC P
Sbjct: 695 RGKKDGEKTRTVSSPKQPALKAICD--KEDSVPNMATEKKDEQIS----GTVSCQKQP 746
Score = 28.9 bits (63), Expect = 6.3
Identities = 43/192 (22%), Positives = 72/192 (37%), Gaps = 18/192 (9%)
Query: 86 DEKCSFCNLQREAVSDCIPSLDSSQSTPTEELSSQGQSNTDKIECQAENYLNALFRKKDL 145
D+K S N+ E I SSQ P E+ +S + + I + +K
Sbjct: 277 DDKDSVSNIATEIKEGPISGTVSSQKQPAEKATSDEKDSVSNIATE--------IKKGQQ 328
Query: 146 PQNCDPNIPLVAQELMKKMIRQFAIEYISKSGKTQENRNGSIGPSIVCKSIQMNQAENSL 205
P + + KK + I G + P+ S + + A N
Sbjct: 329 SGTVSPQKQSAWKVIFKKKVSLLNIATRIMGGGKSGTVSSQKQPASKATSDKTDSALNIA 388
Query: 206 QEEQEGPLDLTVNRMQE----QNTQQGDGVLDLSTKKTSIKSEESSICDPSSENSVAGML 261
E ++G TV+ ++ T + D V +++T+ IK E S S + L
Sbjct: 389 TEIKDGLQCGTVSSQKQPALKATTDEEDSVSNIATE---IKDGEKSGTVSSQKQPA---L 442
Query: 262 QVKTDEKLNVSD 273
+ TDEK +VS+
Sbjct: 443 KATTDEKDSVSN 454
>gi|27436887 pre-B-cell leukemia homeobox 2 [Homo sapiens]
Length = 430
Score = 30.4 bits (67), Expect = 2.2
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 4 GRERMAAAAAAAAAAAAAAQCRSPRCAAERRGFRRELDSWRH 45
G E+ +AAAAAAAAA+ SP + E +R +L RH
Sbjct: 129 GPEKGGGSAAAAAAAAASGGGVSPDNSIEHSDYRSKLAQIRH 170
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.126 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,141,396
Number of Sequences: 37866
Number of extensions: 546613
Number of successful extensions: 3744
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 3363
Number of HSP's gapped (non-prelim): 273
length of query: 318
length of database: 18,247,518
effective HSP length: 102
effective length of query: 216
effective length of database: 14,385,186
effective search space: 3107200176
effective search space used: 3107200176
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.