Guide to the Human Genome
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Name: LOC400456 Sequence: fasta or formatted (162aa) NCBI GI: 113425445
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {162aa} PREDICTED: hypothetical protein
alt prot {193aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.8         24           6
 C cysteine            1.9          3           1
 D aspartate           3.1          5           2
 E glutamate           3.1          5           2
 F phenylalanine       4.9          8           2
 G glycine             9.9         16           2
 H histidine           1.2          2           1
 I isoleucine          1.9          3           1
 K lysine              4.3          7           1
 L leucine             8.0         13           2
 M methionine          1.2          2           1
 N asparagine          3.7          6           1
 P proline             5.6          9           1
 Q glutamine           5.6          9           1
 R arginine            8.6         14           2
 S serine             11.1         18           2
 T threonine           6.2         10           3
 V valine              4.9          8           4
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC400456             1.000   PREDICTED: hypothetical protein 
LOC400456             0.891   PREDICTED: hypothetical protein 
BAG1                  0.048   BCL2-associated athanogene isoform 1L 
C1orf116              0.034   specifically androgen-regulated protein isoform 2 [...
C1orf116              0.034   specifically androgen-regulated protein isoform 1 [...
HCN2                  0.031   hyperpolarization activated cyclic nucleotide-gated...
PAX1                  0.031   paired box 1 
TMEM158               0.031   Ras-induced senescence 1 
LOC100294444          0.027   PREDICTED: similar to family with sequence similari...
FAM48B2               0.027   family with sequence similarity 48, member B2 [Homo...
HOXA4                 0.027   homeobox A4 
LOC651986             0.027   PREDICTED: similar to forkhead box L2 
LOC100288524          0.027   PREDICTED: hypothetical protein XP_002342748 
LOC651986             0.027   PREDICTED: similar to forkhead box L2 
PAK4                  0.027   p21-activated kinase 4 isoform 1 
PAK4                  0.027   p21-activated kinase 4 isoform 1 
PAK4                  0.027   p21-activated kinase 4 isoform 1 
LOC729580             0.027   PREDICTED: hypothetical protein 
LOC729580             0.027   PREDICTED: hypothetical protein 
LOC729580             0.027   PREDICTED: hypothetical protein 
PHOX2B                0.027   paired-like homeobox 2b 
FBRS                  0.027   fibrosin 
ZC3H3                 0.027   zinc finger CCCH-type containing 3 
FNBP4                 0.024   formin binding protein 4 
LOC100292172          0.024   PREDICTED: hypothetical protein 
LOC100289763          0.024   PREDICTED: hypothetical protein XP_002347867 
LOC100289681          0.024   PREDICTED: hypothetical protein XP_002343623 
SRRM2                 0.024   splicing coactivator subunit SRm300 
PGR                   0.024   progesterone receptor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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