Guide to the Human Genome
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Name: LOC400986 Sequence: fasta or formatted (1430aa) NCBI GI: 239741673
Description:

PREDICTED: protein immuno-reactive with anti-PTH polyclonal antibodies

Referenced in:

Ankyrin Family

Other entries for this name:
alt prot [868aa] PREDICTED: protein immuno-reactive with anti-PTH polyclonal antib...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         95           2
 C cysteine            1.7         25           2
 D aspartate           6.4         91           2
 E glutamate          10.1        145           2
 F phenylalanine       1.5         21           1
 G glycine             3.4         49           3
 H histidine           1.5         21           1
 I isoleucine          5.1         73           2
 K lysine             11.8        169           3
 L leucine             8.4        120           3
 M methionine          1.4         20           2
 N asparagine          4.1         58           2
 P proline             3.1         45           3
 Q glutamine           7.2        103           3
 R arginine            4.5         65           2
 S serine             10.1        144           2
 T threonine           6.6         95           2
 V valine              5.0         72           1
 W tryptophan          0.2          3           1
 Y tyrosine            1.1         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: protein immuno-reactive with anti-PTH po... 
ANKRD36               0.893   PREDICTED: ankyrin repeat domain 36 
ANKRD36B              0.690   ankyrin repeat domain 36B 
LOC400986             0.596   PREDICTED: protein immuno-reactive with anti-PTH po...
ANKRD36               0.448   PREDICTED: ankyrin repeat domain 36 
LOC730658             0.293   PREDICTED: similar to UPF0634 protein KIAA1641 [Hom...
LOC100133923          0.235   PREDICTED: similar to UPF0634 protein C 
LOC100289777          0.225   PREDICTED: hypothetical protein XP_002348316 
ANKRD26               0.201   ankyrin repeat domain 26 
ANKRD62               0.191   PREDICTED: ankyrin repeat domain 62 
ANKRD62               0.191   PREDICTED: ankyrin repeat domain 62 isoform 4 [Homo...
ANKRD62               0.190   PREDICTED: ankyrin repeat domain 62 isoform 1 [Homo...
ANKRD30A              0.131   ankyrin repeat domain 30A 
CCDC144A              0.130   coiled-coil domain containing 144A 
ANKRD30B              0.111   ankyrin repeat domain 30B 
ANKRD20A5             0.083   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD20A5             0.083   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD36               0.073   PREDICTED: ankyrin repeat domain 36 
ANKRD20A3             0.073   ankyrin repeat domain 20 family, member A3 
ANKRD20A2             0.073   ankyrin repeat domain 20 family, member A2 
ANKRD20A1             0.073   ankyrin repeat domain 20 family, member A1 
ANKRD20A4             0.072   ankyrin repeat domain 20 family, member A4 
ANKRD18B              0.069   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.069   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.069   PREDICTED: ankyrin repeat domain 18B 
LOC100133939          0.067   PREDICTED: similar to UPF0634 protein KIAA1641 [Hom...
ANKRD18A              0.065   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.065   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.065   PREDICTED: ankyrin repeat domain 18A 
LOC100132733          0.038   PREDICTED: similar to FLJ00310 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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