LCOR 27262

Name: LCOR	Sequence: fasta or formatted (433aa)		NCBI GI: 39930473
Description: ligand dependent nuclear receptor corepressor		Referenced in: Nuclear Receptors
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.0 26 2 C cysteine 0.5 2 1 D aspartate 5.1 22 1 E glutamate 5.3 23 2 F phenylalanine 1.4 6 1 G glycine 7.4 32 1 H histidine 1.6 7 1 I isoleucine 2.5 11 1 K lysine 7.6 33 3 L leucine 9.0 39 2 M methionine 2.8 12 1 N asparagine 3.5 15 1 P proline 7.9 34 2 Q glutamine 7.2 31 2 R arginine 5.3 23 1 S serine 15.5 67 2 T threonine 4.8 21 2 V valine 3.7 16 2 W tryptophan 0.7 3 1 Y tyrosine 2.3 10 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 ligand dependent nuclear receptor corepressor LCORL 0.036 ligand dependent nuclear receptor corepressor-like [... MUC12 0.017 PREDICTED: mucin 12 MUC12 0.017 PREDICTED: mucin 12, cell surface associated LOC100130716 0.016 PREDICTED: similar to mucin 11 LOC100130716 0.016 PREDICTED: similar to Mucin-12 LOC643446 0.014 PREDICTED: similar to ribonucleic acid binding prot... LOC643446 0.014 PREDICTED: similar to ribonucleic acid binding prot... RNPS1 0.014 RNA-binding protein S1, serine-rich domain RNPS1 0.014 RNA-binding protein S1, serine-rich domain LOC643446 0.014 PREDICTED: similar to ribonucleic acid binding prot... LOC643446 0.014 PREDICTED: similar to ribonucleic acid binding prot... LOC643446 0.014 PREDICTED: similar to ribonucleic acid binding prot... LOC643446 0.014 PREDICTED: similar to ribonucleic acid binding prote... TCEB3CL 0.013 transcription elongation factor B polypeptide 3C-li... TCEB3C 0.013 transcription elongation factor B polypeptide 3C [H... MUC17 0.012 mucin 17 MUC5AC 0.012 mucin 5AC MEF2A 0.012 myocyte enhancer factor 2A isoform 4 MEF2A 0.012 myocyte enhancer factor 2A isoform 3 MEF2A 0.012 myocyte enhancer factor 2A isoform 2 MEF2A 0.012 myocyte enhancer factor 2A isoform 1 MUC5B 0.012 mucin 5, subtype B, tracheobronchial MED1 0.012 mediator complex subunit 1 USP28 0.012 ubiquitin specific protease 28 TSC22D1 0.012 TSC22 domain family, member 1 isoform 1 ZEB2 0.011 zinc finger homeobox 1b LOC100133756 0.011 PREDICTED: hypothetical protein, partial SMTN 0.011 smoothelin isoform a LIN54 0.010 lin-54 homolog isoform b Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.