Guide to the Human Genome
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Name: ZNF280C Sequence: fasta or formatted (737aa) NCBI GI: 24308171
Description:

zinc finger protein 280C

Referenced in:

DNA Transposon and Retrovirus-related Sequences

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         31           2
 C cysteine            4.3         32           2
 D aspartate           3.5         26           3
 E glutamate           6.0         44           4
 F phenylalanine       4.3         32           1
 G glycine             3.7         27           1
 H histidine           4.9         36           2
 I isoleucine          4.6         34           2
 K lysine             10.2         75           2
 L leucine             6.4         47           2
 M methionine          2.6         19           2
 N asparagine          4.9         36           2
 P proline             6.9         51           2
 Q glutamine           3.9         29           1
 R arginine            4.3         32           2
 S serine             11.4         84           5
 T threonine           7.3         54           2
 V valine              4.2         31           1
 W tryptophan          0.3          2           1
 Y tyrosine            2.0         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 280C 
ZNF280D               0.644   suppressor of hairy wing homolog 4 isoform 1 
ZNF280D               0.633   suppressor of hairy wing homolog 4 isoform 2 
ZNF280B               0.275   zinc finger protein 280B 
POGZ                  0.259   pogo transposable element with ZNF domain isoform 1 ...
POGZ                  0.259   pogo transposable element with ZNF domain isoform 2 ...
ZNF280A               0.243   zinc finger protein 280A 
ZNF280D               0.088   suppressor of hairy wing homolog 4 isoform 3 
ZNF407                0.033   zinc finger protein 407 isoform 2 
ZNF407                0.033   zinc finger protein 407 isoform 1 
ZNF341                0.033   zinc finger protein 341 
ZFX                   0.032   zinc finger protein, X-linked 
ZFY                   0.031   zinc finger protein, Y-linked isoform 1 
ZFY                   0.031   zinc finger protein, Y-linked isoform 3 
ZFY                   0.031   zinc finger protein, Y-linked isoform 2 
ZBTB24                0.031   zinc finger and BTB domain containing 24 
ZNF840                0.031   PREDICTED: zinc finger protein 840 
ZNF840                0.031   PREDICTED: zinc finger protein 840 
ZNF840                0.031   PREDICTED: zinc finger protein 840 
ZNF57                 0.031   zinc finger protein 57 
PRDM5                 0.031   PR domain containing 5 
ZNF43                 0.031   zinc finger protein 43 
PLAG1                 0.030   pleiomorphic adenoma gene 1 isoform a 
PLAG1                 0.030   pleiomorphic adenoma gene 1 isoform a 
ZNF568                0.029   zinc finger protein 568 
CTCF                  0.029   CCCTC-binding factor 
LOC646864             0.029   PREDICTED: similar to hCG36734 
LOC646864             0.029   PREDICTED: similar to hCG36734 
LOC646864             0.029   PREDICTED: similar to hCG36734 
ZFP28                 0.029   zinc finger protein 28 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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