Guide to the Human Genome
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Name: ZZZ3 Sequence: fasta or formatted (903aa) NCBI GI: 29789072
Description:

zinc finger, ZZ-type containing 3

Referenced in:

Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         37           2
 C cysteine            2.7         24           2
 D aspartate           7.0         63           3
 E glutamate           9.1         82           3
 F phenylalanine       2.3         21           1
 G glycine             4.4         40           1
 H histidine           2.4         22           1
 I isoleucine          3.8         34           1
 K lysine              6.6         60           2
 L leucine             6.9         62           2
 M methionine          1.4         13           2
 N asparagine          5.2         47           3
 P proline             6.8         61           2
 Q glutamine           5.8         52           2
 R arginine            6.5         59           2
 S serine             10.6         96           3
 T threonine           5.2         47           2
 V valine              6.1         55           2
 W tryptophan          0.6          5           1
 Y tyrosine            2.5         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger, ZZ-type containing 3 
MYSM1                 0.015   Myb-like, SWIRM and MPN domains 1 
RSF1                  0.013   remodeling and spacing factor 1 
DNAJC2                0.010   DnaJ (Hsp40) homolog, subfamily C, member 2 isoform ...
DNAJC2                0.010   DnaJ (Hsp40) homolog, subfamily C, member 2 isoform...
SPEN                  0.009   spen homolog, transcriptional regulator 
DSPP                  0.008   dentin sialophosphoprotein preproprotein 
PHF20                 0.008   PHD finger protein 20 
MIB1                  0.008   mindbomb homolog 1 
HECW2                 0.008   HECT, C2 and WW domain containing E3 ubiquitin prote...
NEFH                  0.008   neurofilament, heavy polypeptide 200kDa 
SETD1B                0.008   SET domain containing 1B 
HERC2                 0.008   hect domain and RLD 2 
DNAJC1                0.008   DnaJ (Hsp40) homolog, subfamily C, member 1 
SFRS2IP               0.007   splicing factor, arginine/serine-rich 2, interactin...
COBLL1                0.007   COBL-like 1 
TCHHL1                0.007   trichohyalin-like 1 
MKI67                 0.007   antigen identified by monoclonal antibody Ki-67 iso...
MKI67                 0.007   antigen identified by monoclonal antibody Ki-67 iso...
DPCR1                 0.007   diffuse panbronchiolitis critical region 1 protein ...
LOC100294236          0.007   PREDICTED: similar to diffuse panbronchiolitis crit...
ANKRD50               0.007   ankyrin repeat domain 50 
FILIP1L               0.006   filamin A interacting protein 1-like isoform 3 [Hom...
FILIP1L               0.006   filamin A interacting protein 1-like isoform 1 [Hom...
PRG4                  0.006   proteoglycan 4 isoform B 
PRG4                  0.006   proteoglycan 4 isoform A 
SRPK1                 0.006   SFRS protein kinase 1 
USP31                 0.006   ubiquitin specific peptidase 31 
MYB                   0.006   v-myb myeloblastosis viral oncogene homolog isoform...
MYB                   0.006   v-myb myeloblastosis viral oncogene homolog isoform...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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