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Search of human proteins with 33589846
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|33589846 membrane-associated ring finger (C3HC4) 6 [Homo
sapiens]
(910 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|33589846 membrane-associated ring finger (C3HC4) 6 [Homo sapi... 1857 0.0
gi|50539414 cellular modulator of immune recognition isoform 7 [... 78 3e-14
gi|50539412 cellular modulator of immune recognition isoform 6 [... 78 3e-14
gi|50539410 cellular modulator of immune recognition isoform 8 [... 78 3e-14
gi|8923613 membrane-associated RING-CH protein I [Homo sapiens] 77 7e-14
gi|30425370 membrane-associated ring finger (C3HC4) 3 [Homo sapi... 63 1e-09
gi|154937342 ring finger protein 190 [Homo sapiens] 62 3e-09
gi|154937340 ring finger protein 190 [Homo sapiens] 62 3e-09
gi|53729334 membrane-associated ring finger (C3HC4) 2 isoform 2 ... 57 8e-08
gi|53729332 membrane-associated ring finger (C3HC4) 2 isoform 1 ... 57 8e-08
gi|53729330 membrane-associated ring finger (C3HC4) 2 isoform 1 ... 57 8e-08
gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo sa... 53 1e-06
gi|12383066 axotrophin [Homo sapiens] 52 3e-06
gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo sapi... 51 6e-06
gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens] 49 2e-05
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 44 7e-04
gi|28274705 family with sequence similarity 9, member A [Homo sa... 41 0.006
gi|154759293 cysteine-rich hydrophobic domain 1 [Homo sapiens] 41 0.006
gi|151101407 prothymosin, alpha isoform 1 [Homo sapiens] 40 0.008
gi|61676188 HECT, UBA and WWE domain containing 1 [Homo sapiens] 39 0.022
gi|151101404 prothymosin, alpha isoform 2 [Homo sapiens] 39 0.029
gi|13540523 nucleosomal binding protein 1 [Homo sapiens] 38 0.038
gi|66472382 nischarin [Homo sapiens] 38 0.038
gi|86262149 zinc finger and BTB domain containing 7C [Homo sapiens] 38 0.038
gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens] 38 0.049
gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens] 38 0.049
gi|38788260 bromodomain PHD finger transcription factor isoform ... 38 0.049
gi|38788274 bromodomain PHD finger transcription factor isoform ... 38 0.049
gi|21735415 centromere protein B [Homo sapiens] 37 0.064
gi|55956788 nucleolin [Homo sapiens] 37 0.084
>gi|33589846 membrane-associated ring finger (C3HC4) 6 [Homo
sapiens]
Length = 910
Score = 1857 bits (4810), Expect = 0.0
Identities = 910/910 (100%), Positives = 910/910 (100%)
Query: 1 MDTAEEDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFA 60
MDTAEEDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFA
Sbjct: 1 MDTAEEDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFA 60
Query: 61 FTPIYSPDMPSRLPIQDIFAGLVTSIGTAIRYWFHYTLVAFAWLGVVPLTACRIYKCLFT 120
FTPIYSPDMPSRLPIQDIFAGLVTSIGTAIRYWFHYTLVAFAWLGVVPLTACRIYKCLFT
Sbjct: 61 FTPIYSPDMPSRLPIQDIFAGLVTSIGTAIRYWFHYTLVAFAWLGVVPLTACRIYKCLFT 120
Query: 121 GSVSSLLTLPLDMLSTENLLADCLQGCFVVTCTLCAFISLVWLREQIVHGGAPIWLEHAA 180
GSVSSLLTLPLDMLSTENLLADCLQGCFVVTCTLCAFISLVWLREQIVHGGAPIWLEHAA
Sbjct: 121 GSVSSLLTLPLDMLSTENLLADCLQGCFVVTCTLCAFISLVWLREQIVHGGAPIWLEHAA 180
Query: 181 PPFNAAGHHQNEAPAGGNGAENVAADQPANPPAENAVVGENPDAQDDQAEEEEEDNEEED 240
PPFNAAGHHQNEAPAGGNGAENVAADQPANPPAENAVVGENPDAQDDQAEEEEEDNEEED
Sbjct: 181 PPFNAAGHHQNEAPAGGNGAENVAADQPANPPAENAVVGENPDAQDDQAEEEEEDNEEED 240
Query: 241 DAGVEDAADANNGAQDDMNWNALEWDRAAEELTWERMLGLDGSLVFLEHVFWVVSLNTLF 300
DAGVEDAADANNGAQDDMNWNALEWDRAAEELTWERMLGLDGSLVFLEHVFWVVSLNTLF
Sbjct: 241 DAGVEDAADANNGAQDDMNWNALEWDRAAEELTWERMLGLDGSLVFLEHVFWVVSLNTLF 300
Query: 301 ILVFAFCPYHIGHFSLVGLGFEEHVQASHFEGLITTIVGYILLAITLIICHGLATLVKFH 360
ILVFAFCPYHIGHFSLVGLGFEEHVQASHFEGLITTIVGYILLAITLIICHGLATLVKFH
Sbjct: 301 ILVFAFCPYHIGHFSLVGLGFEEHVQASHFEGLITTIVGYILLAITLIICHGLATLVKFH 360
Query: 361 RSRRLLGVCYIVVKVSLLVVVEIGVFPLICGWWLDICSLEMFDATLKDRELSFQSAPGTT 420
RSRRLLGVCYIVVKVSLLVVVEIGVFPLICGWWLDICSLEMFDATLKDRELSFQSAPGTT
Sbjct: 361 RSRRLLGVCYIVVKVSLLVVVEIGVFPLICGWWLDICSLEMFDATLKDRELSFQSAPGTT 420
Query: 421 MFLHWLVGMVYVFYFASFILLLREVLRPGVLWFLRNLNDPDFNPVQEMIHLPIYRHLRRF 480
MFLHWLVGMVYVFYFASFILLLREVLRPGVLWFLRNLNDPDFNPVQEMIHLPIYRHLRRF
Sbjct: 421 MFLHWLVGMVYVFYFASFILLLREVLRPGVLWFLRNLNDPDFNPVQEMIHLPIYRHLRRF 480
Query: 481 ILSVIVFGSIVLLMLWLPIRIIKSVLPNFLPYNVMLYSDAPVSELSLELLLLQVVLPALL 540
ILSVIVFGSIVLLMLWLPIRIIKSVLPNFLPYNVMLYSDAPVSELSLELLLLQVVLPALL
Sbjct: 481 ILSVIVFGSIVLLMLWLPIRIIKSVLPNFLPYNVMLYSDAPVSELSLELLLLQVVLPALL 540
Query: 541 EQGHTRQWLKGLVRAWTVTAGYLLDLHSYLLGDQEENENSANQQVNNNQHARNNNAIPVV 600
EQGHTRQWLKGLVRAWTVTAGYLLDLHSYLLGDQEENENSANQQVNNNQHARNNNAIPVV
Sbjct: 541 EQGHTRQWLKGLVRAWTVTAGYLLDLHSYLLGDQEENENSANQQVNNNQHARNNNAIPVV 600
Query: 601 GEGLHAAHQAILQQGGPVGFQPYRRPLNFPLRIFLLIVFMCITLLIASLICLTLPVFAGR 660
GEGLHAAHQAILQQGGPVGFQPYRRPLNFPLRIFLLIVFMCITLLIASLICLTLPVFAGR
Sbjct: 601 GEGLHAAHQAILQQGGPVGFQPYRRPLNFPLRIFLLIVFMCITLLIASLICLTLPVFAGR 660
Query: 661 WLMSFWTGTAKIHELYTAACGLYVCWLTIRAVTVMVAWMPQGRRVIFQKVKEWSLMIMKT 720
WLMSFWTGTAKIHELYTAACGLYVCWLTIRAVTVMVAWMPQGRRVIFQKVKEWSLMIMKT
Sbjct: 661 WLMSFWTGTAKIHELYTAACGLYVCWLTIRAVTVMVAWMPQGRRVIFQKVKEWSLMIMKT 720
Query: 721 LIVAVLLAGVVPLLLGLLFELVIVAPLRVPLDQTPLFYPWQDWALGVLHAKIIAAITLMG 780
LIVAVLLAGVVPLLLGLLFELVIVAPLRVPLDQTPLFYPWQDWALGVLHAKIIAAITLMG
Sbjct: 721 LIVAVLLAGVVPLLLGLLFELVIVAPLRVPLDQTPLFYPWQDWALGVLHAKIIAAITLMG 780
Query: 781 PQWWLKTVIEQVYANGIRNIDLHYIVRKLAAPVISVLLLSLCVPYVIASGVVPLLGVTAE 840
PQWWLKTVIEQVYANGIRNIDLHYIVRKLAAPVISVLLLSLCVPYVIASGVVPLLGVTAE
Sbjct: 781 PQWWLKTVIEQVYANGIRNIDLHYIVRKLAAPVISVLLLSLCVPYVIASGVVPLLGVTAE 840
Query: 841 MQNLVHRRIYPFLLMVVVLMAILSFQVRQFKRLYEHIKNDKYLVGQRLVNYERKSGKQGS 900
MQNLVHRRIYPFLLMVVVLMAILSFQVRQFKRLYEHIKNDKYLVGQRLVNYERKSGKQGS
Sbjct: 841 MQNLVHRRIYPFLLMVVVLMAILSFQVRQFKRLYEHIKNDKYLVGQRLVNYERKSGKQGS 900
Query: 901 SPPPPQSSQE 910
SPPPPQSSQE
Sbjct: 901 SPPPPQSSQE 910
>gi|50539414 cellular modulator of immune recognition isoform 7
[Homo sapiens]
Length = 291
Score = 78.2 bits (191), Expect = 3e-14
Identities = 31/56 (55%), Positives = 38/56 (67%)
Query: 4 AEEDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRF 59
+ +DICR+C EG E PL PC CTGS+ F+HQ CL QW+K S CELCK+ F
Sbjct: 75 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 130
>gi|50539412 cellular modulator of immune recognition isoform 6
[Homo sapiens]
Length = 291
Score = 78.2 bits (191), Expect = 3e-14
Identities = 31/56 (55%), Positives = 38/56 (67%)
Query: 4 AEEDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRF 59
+ +DICR+C EG E PL PC CTGS+ F+HQ CL QW+K S CELCK+ F
Sbjct: 75 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 130
>gi|50539410 cellular modulator of immune recognition isoform 8
[Homo sapiens]
Length = 291
Score = 78.2 bits (191), Expect = 3e-14
Identities = 31/56 (55%), Positives = 38/56 (67%)
Query: 4 AEEDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRF 59
+ +DICR+C EG E PL PC CTGS+ F+HQ CL QW+K S CELCK+ F
Sbjct: 75 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 130
>gi|8923613 membrane-associated RING-CH protein I [Homo sapiens]
Length = 272
Score = 77.0 bits (188), Expect = 7e-14
Identities = 30/54 (55%), Positives = 38/54 (70%)
Query: 6 EDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRF 59
+DICR+C EG E PL PC CTG+++F+HQ CL QW+K S CELCK+ F
Sbjct: 60 QDICRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELCKYDF 113
>gi|30425370 membrane-associated ring finger (C3HC4) 3 [Homo
sapiens]
Length = 253
Score = 63.2 bits (152), Expect = 1e-09
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 5 EEDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFA 60
+ +CR+C EG+ ++ L PC CTG++ IH+ CL WL S YCELC RFA
Sbjct: 67 DRPMCRICH-EGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFA 121
>gi|154937342 ring finger protein 190 [Homo sapiens]
Length = 808
Score = 61.6 bits (148), Expect = 3e-09
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 10/65 (15%)
Query: 2 DTAEE-DICRVCR-SEGTPEKPLYHPCVCTGSIKFIHQECLVQWLK--------HSRKEY 51
D+ EE D+CR+C+ + G+P PL PC C GS++F+HQECL +WLK +
Sbjct: 651 DSEEEGDLCRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKT 710
Query: 52 CELCK 56
CE+CK
Sbjct: 711 CEMCK 715
>gi|154937340 ring finger protein 190 [Homo sapiens]
Length = 808
Score = 61.6 bits (148), Expect = 3e-09
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 10/65 (15%)
Query: 2 DTAEE-DICRVCR-SEGTPEKPLYHPCVCTGSIKFIHQECLVQWLK--------HSRKEY 51
D+ EE D+CR+C+ + G+P PL PC C GS++F+HQECL +WLK +
Sbjct: 651 DSEEEGDLCRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKT 710
Query: 52 CELCK 56
CE+CK
Sbjct: 711 CEMCK 715
>gi|53729334 membrane-associated ring finger (C3HC4) 2 isoform 2
[Homo sapiens]
Length = 176
Score = 57.0 bits (136), Expect = 8e-08
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 1 MDTAEED-ICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRF 59
+DT + CR+C EG + L PC CTG++ +H+ CL +WL S YCELC F
Sbjct: 55 LDTPSDGPFCRICH-EGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
Query: 60 A 60
A
Sbjct: 114 A 114
>gi|53729332 membrane-associated ring finger (C3HC4) 2 isoform 1
[Homo sapiens]
Length = 246
Score = 57.0 bits (136), Expect = 8e-08
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 1 MDTAEED-ICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRF 59
+DT + CR+C EG + L PC CTG++ +H+ CL +WL S YCELC F
Sbjct: 55 LDTPSDGPFCRICH-EGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
Query: 60 A 60
A
Sbjct: 114 A 114
>gi|53729330 membrane-associated ring finger (C3HC4) 2 isoform 1
[Homo sapiens]
Length = 246
Score = 57.0 bits (136), Expect = 8e-08
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 1 MDTAEED-ICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRF 59
+DT + CR+C EG + L PC CTG++ +H+ CL +WL S YCELC F
Sbjct: 55 LDTPSDGPFCRICH-EGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
Query: 60 A 60
A
Sbjct: 114 A 114
>gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo
sapiens]
Length = 402
Score = 53.1 bits (126), Expect = 1e-06
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 6 EDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRF 59
+ IC++C +G + L +PC C GS+++ HQ CL++W+ CELC +R+
Sbjct: 167 QPICKIC-FQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRY 219
>gi|12383066 axotrophin [Homo sapiens]
Length = 704
Score = 51.6 bits (122), Expect = 3e-06
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 5 EEDICRVCR-SEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKE--------YCELC 55
E D+CR+C+ + + L PC CTGS++++HQ+C+ +WL+ CELC
Sbjct: 548 EGDLCRICQMAAASSSNLLIEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELC 607
Query: 56 KHR 58
K +
Sbjct: 608 KEK 610
>gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo
sapiens]
Length = 410
Score = 50.8 bits (120), Expect = 6e-06
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 8 ICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRF 59
+CR+C +G + L PC C GS+K HQ CL++W+ CELC +++
Sbjct: 162 LCRIC-FQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKY 212
>gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens]
Length = 346
Score = 48.9 bits (115), Expect = 2e-05
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 9 CRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRF 59
CR+C +G + L PC C GS++ HQ CL++W+ CELC ++
Sbjct: 110 CRIC-FQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKY 159
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 43.9 bits (102), Expect = 7e-04
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 177 EHAAPPFNAAGHHQNEAPAGGNGAENVAADQPANPPAENAV---VGENPDAQDDQAEEEE 233
E PP E AG + E +A+D+ N V V ENP+ ++++ EEEE
Sbjct: 484 EETPPPVEPEEEEDTE-DAGLDDWEAMASDEETEKVEGNKVHIEVKENPEEEEEEEEEEE 542
Query: 234 EDNEEEDDAGVEDAADANNGAQDD 257
ED E E++ E ++ + G ++D
Sbjct: 543 EDEESEEEEEEEGESEGSEGDEED 566
>gi|28274705 family with sequence similarity 9, member A [Homo
sapiens]
Length = 332
Score = 40.8 bits (94), Expect = 0.006
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 192 EAPAGGNGAENVAADQPANPPAENAVVGENPDAQDDQAEEEEEDNEE-EDDAGVEDAADA 250
EA A AE AA + A AE VV + + + ++ EE+EE+ EE E++ G E+ +
Sbjct: 193 EAEAAAAAAEAAAAAEAAAAAAEVIVVEDEEEEEKEEEEEKEEEEEEGEEEGGGEEGEEG 252
Query: 251 NNGAQDDMNWNALEWDRAAEE 271
G + + E + EE
Sbjct: 253 GGGGEGEETEEEEEEEEEEEE 273
>gi|154759293 cysteine-rich hydrophobic domain 1 [Homo sapiens]
Length = 224
Score = 40.8 bits (94), Expect = 0.006
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 201 ENVAADQPANPPAENAVVGENPDAQDDQAEEEEEDNEEEDDAGVEDAA 248
E AA ++P + ++V G + D +D++ EEEEE+ EEE++ E+ A
Sbjct: 22 EEEAATSSSSPSSSSSVSGPDDDEEDEEEEEEEEEEEEEEEEEEEEEA 69
>gi|151101407 prothymosin, alpha isoform 1 [Homo sapiens]
Length = 111
Score = 40.4 bits (93), Expect = 0.008
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 192 EAPAGGNGAENVAADQPANPPAENAVVGENPDAQDDQAEEEEEDNEEEDDAGVEDA--AD 249
+APA GN AEN ++ A+N V E + +++ EEEE D EEED E+A A
Sbjct: 32 DAPANGN-AEN---EENGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAESAT 87
Query: 250 ANNGAQDD 257
A+DD
Sbjct: 88 GKRAAEDD 95
Score = 38.5 bits (88), Expect = 0.029
Identities = 29/70 (41%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 200 AENVAADQPANPPAENAVVGENP-DAQDDQAEEE--EEDNEEEDDAGVEDAADANNGAQD 256
AEN D PAN AEN GE D + D+ EEE EE+ EEE+ G E+ D + A+
Sbjct: 27 AEN-GRDAPANGNAENEENGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAES 85
Query: 257 DMNWNALEWD 266
A E D
Sbjct: 86 ATGKRAAEDD 95
>gi|61676188 HECT, UBA and WWE domain containing 1 [Homo sapiens]
Length = 4374
Score = 38.9 bits (89), Expect = 0.022
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 219 GENPDAQDDQAEEEEEDNEEEDDAGVEDAADANNGAQDDMNWNALEWD----RAAEELTW 274
G N D D Q EEEEE+ +EEDD ++ + + DD + L+ D A+ + +
Sbjct: 2423 GSNEDEDDSQDEEEEEEEDEEDDQEDDEGEEGDEDDDDDGSEMELDEDYPDMNASPLVRF 2482
Query: 275 ERMLGLDGSLVFLEHVF 291
ER D ++ +++F
Sbjct: 2483 ERFDREDDLIIEFDNMF 2499
Score = 34.3 bits (77), Expect = 0.54
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 182 PFNAAGHHQNEAPAGGNGAENVAADQPANPPAENAVVGENPDAQDDQAEEE-EEDNEEED 240
P + H Q E +G N E+ + D+ E D +DDQ ++E EE +E++D
Sbjct: 2409 PEDEEEHTQEEDSSGSNEDEDDSQDEEEE---------EEEDEEDDQEDDEGEEGDEDDD 2459
Query: 241 DAGVEDAADANNGAQDDMNWNAL 263
D G E D + DMN + L
Sbjct: 2460 DDGSEMELDED---YPDMNASPL 2479
>gi|151101404 prothymosin, alpha isoform 2 [Homo sapiens]
Length = 110
Score = 38.5 bits (88), Expect = 0.029
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 192 EAPAGGNGAENVAADQPANPPAENAVVGENPDAQDDQAEEEEEDNEEEDDAGVEDAADAN 251
+APA GN E + N E G + ++++ + EEED +E+++A ++A
Sbjct: 32 DAPANGNANEENGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEA---ESATGK 88
Query: 252 NGAQDD 257
A+DD
Sbjct: 89 RAAEDD 94
Score = 34.3 bits (77), Expect = 0.54
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 200 AENVAADQPANPPAENAVVGENPDAQDDQAEEE--EEDNEEEDDAGVEDAADANNGAQDD 257
AEN D PAN A + D + D+ EEE EE+ EEE+ G E+ D + A+
Sbjct: 27 AEN-GRDAPANGNANEENGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAESA 85
Query: 258 MNWNALEWD 266
A E D
Sbjct: 86 TGKRAAEDD 94
>gi|13540523 nucleosomal binding protein 1 [Homo sapiens]
Length = 282
Score = 38.1 bits (87), Expect = 0.038
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 201 ENVAADQPANPPAENAVVGENPDAQDDQAEEEEEDNEEEDDAGVEDAAD-ANNGAQDDMN 259
EN+ + AV E + ++DQ E+EE+ NEE+ +AG ED + ++D N
Sbjct: 103 ENIEDATEKGGEKKEAVAAEVKNEEEDQKEDEEDQNEEKGEAGKEDKDEKGEEDGKEDKN 162
Query: 260 WNALEWDRAAEE 271
N D +E
Sbjct: 163 GNEKGEDAKEKE 174
>gi|66472382 nischarin [Homo sapiens]
Length = 1504
Score = 38.1 bits (87), Expect = 0.038
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 212 PAENAVVGENPDAQDDQAEEEEEDNEEEDDA--------GVEDAADANNGAQDDMNWNAL 263
PA + + Q +Q EEE+E+ EEE+D G D + G Q +
Sbjct: 619 PAWIEAANQREEGQGEQGEEEDEEEEEEEDVAENRYFEMGPPDVEEEEGGGQGEEEEEEE 678
Query: 264 EWDRAAEE-LTWERMLGLDGSLVFLEHV 290
E + A EE L E LG D + LEH+
Sbjct: 679 EDEEAEEERLALEWALGADEDFL-LEHI 705
Score = 30.4 bits (67), Expect = 7.8
Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
Query: 147 CFVVTCTLCAFIS-LVWLREQIVHGGAPIWLEHAAPPFNAAGHHQNEAPAGGNGAENVAA 205
C T T FI L L Q + P W+E A G E E+VA
Sbjct: 592 CIGYTATNQDFIQRLSTLIRQAIERQLPAWIEAANQREEGQGEQGEEEDEEEEEEEDVAE 651
Query: 206 DQ--PANPPAENAVVGENPDAQDDQAEEEEEDNEE 238
++ PP G ++++ EE+EE EE
Sbjct: 652 NRYFEMGPPDVEEEEGGGQGEEEEEEEEDEEAEEE 686
>gi|86262149 zinc finger and BTB domain containing 7C [Homo sapiens]
Length = 619
Score = 38.1 bits (87), Expect = 0.038
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 11/59 (18%)
Query: 194 PAGGNGAENVAADQPANPPAENAVVGENPDAQDDQAEEEEEDNEEEDDAGVEDAADANN 252
P G G E+ D ++ D D++ EEEEE+ EE+DD ED AD N
Sbjct: 129 PGGDGGEEDDKEDDD-----------DDEDDDDEEDEEEEEEEEEDDDDDTEDFADQEN 176
>gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 487
Score = 37.7 bits (86), Expect = 0.049
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 183 FNAAGHHQNEAPAGGNGAENVAADQPANPPAENAVVGENPDAQDDQAEEEEEDNEEEDDA 242
+ A G H A NG A + EN D +D++ E++EED +EEDD
Sbjct: 298 YRAKGKHD----AANNGVVKAAKSKKKKEEEEN-----EEDEEDEEEEKDEEDEDEEDDE 348
Query: 243 GVEDAAD 249
ED D
Sbjct: 349 DEEDGDD 355
>gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]
Length = 1759
Score = 37.7 bits (86), Expect = 0.049
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 194 PAGGNGAENVAADQPANPPAENAVVGENPDAQDDQAEEEEEDNEEEDDAGVEDAADANNG 253
P G A AA + + E + +A+DD+ E+++ED+++EDD +D D
Sbjct: 1659 PREGAAAAAAAAGESSQEDEEEELELPEEEAEDDEDEDDDEDDDDEDDDEDDDDEDLRTD 1718
Query: 254 AQDDMNWNALE 264
+++ + A E
Sbjct: 1719 SEESLPEAAAE 1729
Score = 32.3 bits (72), Expect = 2.1
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 181 PPFNAAGHHQNEAPAGGNGAENVAADQPANPPAENAVVGENPDAQDDQAEEEEEDNEEED 240
P A G + A A E+ D+ ++ D DD+ +++E+D+E++D
Sbjct: 1652 PDAAAPGPREGAAAAAAAAGESSQEDEEEELELPEEEAEDDEDEDDDEDDDDEDDDEDDD 1711
Query: 241 D 241
D
Sbjct: 1712 D 1712
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 37.7 bits (86), Expect = 0.049
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 180 APPFNAA----GHHQNEAPAGGNGAENVAADQPANPPAENAVVGENPDAQDDQAEEEE-E 234
APP +A G GG G A A A N VV ++ ++++++ EE+
Sbjct: 83 APPSTSAPGRGGRGGGGGRTGGGGGGGHLARTTAARRAVNKVVYDDHESEEEEEEEDMVS 142
Query: 235 DNEEEDDAGVEDAADANNGAQDDM 258
+ EEE+D E+ D+ + +D+M
Sbjct: 143 EEEEEEDGDAEETQDSEDDEEDEM 166
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 37.7 bits (86), Expect = 0.049
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 180 APPFNAA----GHHQNEAPAGGNGAENVAADQPANPPAENAVVGENPDAQDDQAEEEE-E 234
APP +A G GG G A A A N VV ++ ++++++ EE+
Sbjct: 83 APPSTSAPGRGGRGGGGGRTGGGGGGGHLARTTAARRAVNKVVYDDHESEEEEEEEDMVS 142
Query: 235 DNEEEDDAGVEDAADANNGAQDDM 258
+ EEE+D E+ D+ + +D+M
Sbjct: 143 EEEEEEDGDAEETQDSEDDEEDEM 166
>gi|21735415 centromere protein B [Homo sapiens]
Length = 599
Score = 37.4 bits (85), Expect = 0.064
Identities = 21/73 (28%), Positives = 35/73 (47%)
Query: 177 EHAAPPFNAAGHHQNEAPAGGNGAENVAADQPANPPAENAVVGENPDAQDDQAEEEEEDN 236
E ++ A Q AGG+ A ++ P GE+ D+ ++ ++EEED+
Sbjct: 465 ESSSEGLEAEDWAQGVVEAGGSFGAYGAQEEAQCPTLHFLEGGEDSDSDSEEEDDEEEDD 524
Query: 237 EEEDDAGVEDAAD 249
E+EDD E+ D
Sbjct: 525 EDEDDDDDEEDGD 537
Score = 33.1 bits (74), Expect = 1.2
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 219 GENPDAQDDQAEEEEEDNEEEDDAGVEDAADANNGAQ 255
GE + ++++ EEEE + EEE++ G E+ + G +
Sbjct: 405 GEEEEEEEEEEEEEEGEGEEEEEEGEEEEEEGGEGEE 441
Score = 31.2 bits (69), Expect = 4.6
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 215 NAVVGENPDAQDDQAEEEEEDNEEEDDAGVEDAADANNGAQDDMNWNALEWDRAAEE 271
NA + + ++ ++ EEEEE+ EEE+ G E+ + ++ L + EE
Sbjct: 394 NATITTSLKSEGEEEEEEEEEEEEEEGEGEEEEEEGEEEEEEGGEGEELGEEEEVEE 450
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 37.0 bits (84), Expect = 0.084
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 200 AENVAADQPANPPAENAVVGENPDAQDDQAEEEEEDNEEEDDAGVEDA 247
A+NVA D+ E+ ++ D +DD E++EE+ EEE++ V++A
Sbjct: 229 AKNVAEDEDEEEDDEDEDDDDDEDDEDDDDEDDEEEEEEEEEEPVKEA 276
Score = 32.7 bits (73), Expect = 1.6
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 199 GAENVAADQPANPPAENAVVGENPDAQDDQAEEEEEDNEEEDD 241
G + A +NA ++ + +DD +EE+EED+E+ED+
Sbjct: 123 GKKGAAIPAKGAKNGKNAKKEDSDEEEDDDSEEDEEDDEDEDE 165
Score = 32.7 bits (73), Expect = 1.6
Identities = 20/93 (21%), Positives = 40/93 (43%)
Query: 194 PAGGNGAENVAADQPANPPAENAVVGENPDAQDDQAEEEEEDNEEEDDAGVEDAADANNG 253
PA G A V + N + ++ D DD E++E+D++E+D+ E+ +
Sbjct: 215 PAKGKKAAKVVPVKAKNVAEDEDEEEDDEDEDDDDDEDDEDDDDEDDEEEEEEEEEEPVK 274
Query: 254 AQDDMNWNALEWDRAAEELTWERMLGLDGSLVF 286
+ +AA E +++ G + + F
Sbjct: 275 EAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAF 307
Score = 32.3 bits (72), Expect = 2.1
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 22/83 (26%)
Query: 197 GNGAENVAADQPANPPAENAVVGENPDAQDDQAEEEEED---------------NEEEDD 241
G A+ +D+ + +E D +DD+ E+E+ED +E+EDD
Sbjct: 137 GKNAKKEDSDEEEDDDSEE-------DEEDDEDEDEDEDEIEPAAMKAAAAAPASEDEDD 189
Query: 242 AGVEDAADANNGAQDDMNWNALE 264
ED D ++ +DD A+E
Sbjct: 190 EDDEDDEDDDDDEEDDSEEEAME 212
Score = 30.8 bits (68), Expect = 6.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 212 PAENAVVGENPDAQDDQAEEEEEDNEEEDDAGVED 246
PA+ A G+N +D EE+++ E+E+D ED
Sbjct: 130 PAKGAKNGKNAKKEDSDEEEDDDSEEDEEDDEDED 164
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.141 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,236,233
Number of Sequences: 37866
Number of extensions: 1664830
Number of successful extensions: 16025
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 98
Number of HSP's that attempted gapping in prelim test: 12481
Number of HSP's gapped (non-prelim): 1963
length of query: 910
length of database: 18,247,518
effective HSP length: 111
effective length of query: 799
effective length of database: 14,044,392
effective search space: 11221469208
effective search space used: 11221469208
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.