Guide to the Human Genome
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Name: PTMA Sequence: fasta or formatted (110aa) NCBI GI: 151101404
Description:

prothymosin, alpha isoform 2

Referenced in:

Nucleus and Nucleolus

Other entries for this name:
alt prot [111aa] prothymosin, alpha isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         11           2
 C cysteine            0.0          0           0
 D aspartate          17.3         19           3
 E glutamate          30.9         34           8
 F phenylalanine       0.0          0           0
 G glycine             8.2          9           2
 H histidine           0.0          0           0
 I isoleucine          0.9          1           1
 K lysine              7.3          8           2
 L leucine             0.9          1           1
 M methionine          0.9          1           1
 N asparagine          5.5          6           1
 P proline             0.9          1           1
 Q glutamine           1.8          2           1
 R arginine            1.8          2           1
 S serine              3.6          4           2
 T threonine           5.5          6           2
 V valine              4.5          5           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   prothymosin, alpha isoform 2 
PTMA                  0.980   prothymosin, alpha isoform 1 
LOC728026             0.888   PREDICTED: hypothetical protein 
LOC728026             0.888   PREDICTED: hypothetical protein 
LOC728026             0.888   PREDICTED: hypothetical protein 
LOC441454             0.883   PREDICTED: hypothetical protein 
PTMS                  0.291   parathymosin 
RPGR                  0.194   retinitis pigmentosa GTPase regulator isoform C [Hom...
UBTF                  0.184   upstream binding transcription factor, RNA polymera...
UBTF                  0.184   upstream binding transcription factor, RNA polymera...
UBTF                  0.184   upstream binding transcription factor, RNA polymerase...
NCL                   0.179   nucleolin 
LOC728792             0.179   PREDICTED: hypothetical protein 
ANP32B                0.173   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
PELP1                 0.173   proline, glutamic acid and leucine rich protein 1 [...
MYT1L                 0.173   myelin transcription factor 1-like 
CDC2L2                0.168   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.168   cell division cycle 2-like 2 isoform 1 
NEFM                  0.168   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.168   neurofilament, medium polypeptide 150kDa isoform 2 ...
CDC2L1                0.168   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.168   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.168   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.168   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.168   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.168   cell division cycle 2-like 1 (PITSLRE proteins) isof...
LOC647020             0.168   PREDICTED: similar to acidic (leucine-rich) nuclear...
LOC647020             0.168   PREDICTED: similar to acidic (leucine-rich) nuclear...
YTHDC1                0.168   splicing factor YT521-B isoform 2 
YTHDC1                0.168   splicing factor YT521-B isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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