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Search of human proteins with 122939208
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|122939208 nuclear antigen Sp100 isoform 1 [Homo sapiens]
(885 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|122939208 nuclear antigen Sp100 isoform 1 [Homo sapiens] 1821 0.0
gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens] 1424 0.0
gi|217330601 SP140 nuclear body protein isoform 1 [Homo sapiens] 566 e-161
gi|134133279 SP140 nuclear body protein-like [Homo sapiens] 407 e-113
gi|190343006 SP110 nuclear body protein isoform c [Homo sapiens] 358 1e-98
gi|190343010 SP110 nuclear body protein isoform a [Homo sapiens] 317 2e-86
gi|190343008 SP110 nuclear body protein isoform b [Homo sapiens] 206 6e-53
gi|52487277 SP140 nuclear body protein isoform 2 [Homo sapiens] 117 6e-26
gi|47419911 transcriptional intermediary factor 1 alpha isoform ... 100 1e-20
gi|47419909 transcriptional intermediary factor 1 alpha isoform ... 100 1e-20
gi|74027251 tripartite motif-containing 33 protein isoform beta ... 95 3e-19
gi|74027249 tripartite motif-containing 33 protein isoform alpha... 94 4e-19
gi|209977097 tripartite motif-containing 66 [Homo sapiens] 79 1e-14
gi|4557291 autoimmune regulator isoform 1 [Homo sapiens] 69 2e-11
gi|38016945 deformed epidermal autoregulatory factor 1 [Homo sap... 67 1e-10
gi|5032179 tripartite motif-containing 28 protein [Homo sapiens] 62 2e-09
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 60 9e-09
gi|4557293 autoimmune regulator isoform 2 [Homo sapiens] 56 1e-07
gi|34335264 zinc finger, MYND-type containing 8 isoform c [Homo ... 56 2e-07
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 55 4e-07
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 55 4e-07
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 55 4e-07
gi|34335262 zinc finger, MYND-type containing 8 isoform a [Homo ... 54 6e-07
gi|34335266 zinc finger, MYND-type containing 8 isoform b [Homo ... 54 6e-07
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 53 1e-06
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 52 2e-06
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 50 1e-05
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 49 2e-05
gi|13699811 WHSC1L1 protein isoform long [Homo sapiens] 47 8e-05
gi|217330641 IWS1 homolog [Homo sapiens] 46 1e-04
>gi|122939208 nuclear antigen Sp100 isoform 1 [Homo sapiens]
Length = 885
Score = 1821 bits (4716), Expect = 0.0
Identities = 885/885 (100%), Positives = 885/885 (100%)
Query: 1 MAGGGGDLSTRRLNECISPVANEMNHLPAHSHDLQRMFTEDQGVDDRLLYDIVFKHFKRN 60
MAGGGGDLSTRRLNECISPVANEMNHLPAHSHDLQRMFTEDQGVDDRLLYDIVFKHFKRN
Sbjct: 1 MAGGGGDLSTRRLNECISPVANEMNHLPAHSHDLQRMFTEDQGVDDRLLYDIVFKHFKRN 60
Query: 61 KVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNLVPVQRVVYNVLSELEKTFNLP 120
KVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNLVPVQRVVYNVLSELEKTFNLP
Sbjct: 61 KVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNLVPVQRVVYNVLSELEKTFNLP 120
Query: 121 VLEALFSDVNMQEYPDLIHIYKGFENVIHDKLPLQESEEEEREERSGLQLSLEQGTGENS 180
VLEALFSDVNMQEYPDLIHIYKGFENVIHDKLPLQESEEEEREERSGLQLSLEQGTGENS
Sbjct: 121 VLEALFSDVNMQEYPDLIHIYKGFENVIHDKLPLQESEEEEREERSGLQLSLEQGTGENS 180
Query: 181 FRSLTWPPSGSPSHAGTTPPENGLSEHPCETEQINAKRKDTTSDKDDSLGSQQTNEQCAQ 240
FRSLTWPPSGSPSHAGTTPPENGLSEHPCETEQINAKRKDTTSDKDDSLGSQQTNEQCAQ
Sbjct: 181 FRSLTWPPSGSPSHAGTTPPENGLSEHPCETEQINAKRKDTTSDKDDSLGSQQTNEQCAQ 240
Query: 241 KAEPTESCEQIAVQVNNGDAGREMPCPLPCDEESPEAELHNHGIQINSCSVRLVDIKKEK 300
KAEPTESCEQIAVQVNNGDAGREMPCPLPCDEESPEAELHNHGIQINSCSVRLVDIKKEK
Sbjct: 241 KAEPTESCEQIAVQVNNGDAGREMPCPLPCDEESPEAELHNHGIQINSCSVRLVDIKKEK 300
Query: 301 PFSNSKVECQAQARTHHNQASDIIVISSEDSEGSTDVDEPLEVFISAPRSEPVINNDNPL 360
PFSNSKVECQAQARTHHNQASDIIVISSEDSEGSTDVDEPLEVFISAPRSEPVINNDNPL
Sbjct: 301 PFSNSKVECQAQARTHHNQASDIIVISSEDSEGSTDVDEPLEVFISAPRSEPVINNDNPL 360
Query: 361 ESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESFKKRVIGQDHDFSESSEEEAPAEASS 420
ESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESFKKRVIGQDHDFSESSEEEAPAEASS
Sbjct: 361 ESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESFKKRVIGQDHDFSESSEEEAPAEASS 420
Query: 421 GALRSKHGEKAPMTSRSTSTWRIPSRKRRFSSSDFSDLSNGEELQETCSSSLRRGSGSQP 480
GALRSKHGEKAPMTSRSTSTWRIPSRKRRFSSSDFSDLSNGEELQETCSSSLRRGSGSQP
Sbjct: 421 GALRSKHGEKAPMTSRSTSTWRIPSRKRRFSSSDFSDLSNGEELQETCSSSLRRGSGSQP 480
Query: 481 QEPENKKCSCVMCFPKGVPRSQEARTESSQASDMMDTMDVENNSTLEKHSGKRRKKRRHR 540
QEPENKKCSCVMCFPKGVPRSQEARTESSQASDMMDTMDVENNSTLEKHSGKRRKKRRHR
Sbjct: 481 QEPENKKCSCVMCFPKGVPRSQEARTESSQASDMMDTMDVENNSTLEKHSGKRRKKRRHR 540
Query: 541 SKVNGLQRGRKKDRPRKHLTLNNKVQKKRWQQRGRKANTRPLKRRRKRGPRIPKDENINF 600
SKVNGLQRGRKKDRPRKHLTLNNKVQKKRWQQRGRKANTRPLKRRRKRGPRIPKDENINF
Sbjct: 541 SKVNGLQRGRKKDRPRKHLTLNNKVQKKRWQQRGRKANTRPLKRRRKRGPRIPKDENINF 600
Query: 601 KQSELPVTCGEVKGTLYKERFKQGTSKKCIQSEDKKWFTPREFEIEGDRGASKNWKLSIR 660
KQSELPVTCGEVKGTLYKERFKQGTSKKCIQSEDKKWFTPREFEIEGDRGASKNWKLSIR
Sbjct: 601 KQSELPVTCGEVKGTLYKERFKQGTSKKCIQSEDKKWFTPREFEIEGDRGASKNWKLSIR 660
Query: 661 CGGYTLKVLMENKFLPEPPSTRKKRILESHNNTLVDPCPENSNICEVCNKWGRLFCCDTC 720
CGGYTLKVLMENKFLPEPPSTRKKRILESHNNTLVDPCPENSNICEVCNKWGRLFCCDTC
Sbjct: 661 CGGYTLKVLMENKFLPEPPSTRKKRILESHNNTLVDPCPENSNICEVCNKWGRLFCCDTC 720
Query: 721 PRSFHEHCHIPSVEANKNPWSCIFCRIKTIQERCPESQSGHQESEVLMRQMLPEEQLKCE 780
PRSFHEHCHIPSVEANKNPWSCIFCRIKTIQERCPESQSGHQESEVLMRQMLPEEQLKCE
Sbjct: 721 PRSFHEHCHIPSVEANKNPWSCIFCRIKTIQERCPESQSGHQESEVLMRQMLPEEQLKCE 780
Query: 781 FLLLKVYCDSKSCFFASEPYYNREGSQGPQKPMWLNKVKTSLNEQMYTRVEGFVQDMRLI 840
FLLLKVYCDSKSCFFASEPYYNREGSQGPQKPMWLNKVKTSLNEQMYTRVEGFVQDMRLI
Sbjct: 781 FLLLKVYCDSKSCFFASEPYYNREGSQGPQKPMWLNKVKTSLNEQMYTRVEGFVQDMRLI 840
Query: 841 FHNHKEFYREDKFTRLGIQVQDIFEKNFRNIFAIQETSKNIIMFI 885
FHNHKEFYREDKFTRLGIQVQDIFEKNFRNIFAIQETSKNIIMFI
Sbjct: 841 FHNHKEFYREDKFTRLGIQVQDIFEKNFRNIFAIQETSKNIIMFI 885
>gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens]
Length = 879
Score = 1424 bits (3685), Expect = 0.0
Identities = 699/701 (99%), Positives = 700/701 (99%)
Query: 1 MAGGGGDLSTRRLNECISPVANEMNHLPAHSHDLQRMFTEDQGVDDRLLYDIVFKHFKRN 60
MAGGGGDLSTRRLNECISPVANEMNHLPAHSHDLQRMFTEDQGVDDRLLYDIVFKHFKRN
Sbjct: 1 MAGGGGDLSTRRLNECISPVANEMNHLPAHSHDLQRMFTEDQGVDDRLLYDIVFKHFKRN 60
Query: 61 KVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNLVPVQRVVYNVLSELEKTFNLP 120
KVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNLVPVQRVVYNVLSELEKTFNLP
Sbjct: 61 KVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNLVPVQRVVYNVLSELEKTFNLP 120
Query: 121 VLEALFSDVNMQEYPDLIHIYKGFENVIHDKLPLQESEEEEREERSGLQLSLEQGTGENS 180
VLEALFSDVNMQEYPDLIHIYKGFENVIHDKLPLQESEEEEREERSGLQLSLEQGTGENS
Sbjct: 121 VLEALFSDVNMQEYPDLIHIYKGFENVIHDKLPLQESEEEEREERSGLQLSLEQGTGENS 180
Query: 181 FRSLTWPPSGSPSHAGTTPPENGLSEHPCETEQINAKRKDTTSDKDDSLGSQQTNEQCAQ 240
FRSLTWPPSGSPSHAGTTPPENGLSEHPCETEQINAKRKDTTSDKDDSLGSQQTNEQCAQ
Sbjct: 181 FRSLTWPPSGSPSHAGTTPPENGLSEHPCETEQINAKRKDTTSDKDDSLGSQQTNEQCAQ 240
Query: 241 KAEPTESCEQIAVQVNNGDAGREMPCPLPCDEESPEAELHNHGIQINSCSVRLVDIKKEK 300
KAEPTESCEQIAVQVNNGDAGREMPCPLPCDEESPEAELHNHGIQINSCSVRLVDIKKEK
Sbjct: 241 KAEPTESCEQIAVQVNNGDAGREMPCPLPCDEESPEAELHNHGIQINSCSVRLVDIKKEK 300
Query: 301 PFSNSKVECQAQARTHHNQASDIIVISSEDSEGSTDVDEPLEVFISAPRSEPVINNDNPL 360
PFSNSKVECQAQARTHHNQASDIIVISSEDSEGSTDVDEPLEVFISAPRSEPVINNDNPL
Sbjct: 301 PFSNSKVECQAQARTHHNQASDIIVISSEDSEGSTDVDEPLEVFISAPRSEPVINNDNPL 360
Query: 361 ESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESFKKRVIGQDHDFSESSEEEAPAEASS 420
ESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESFKKRVIGQDHDFSESSEEEAPAEASS
Sbjct: 361 ESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESFKKRVIGQDHDFSESSEEEAPAEASS 420
Query: 421 GALRSKHGEKAPMTSRSTSTWRIPSRKRRFSSSDFSDLSNGEELQETCSSSLRRGSGSQP 480
GALRSKHGEKAPMTSRSTSTWRIPSRKRRFSSSDFSDLSNGEELQETCSSSLRRGSGSQP
Sbjct: 421 GALRSKHGEKAPMTSRSTSTWRIPSRKRRFSSSDFSDLSNGEELQETCSSSLRRGSGSQP 480
Query: 481 QEPENKKCSCVMCFPKGVPRSQEARTESSQASDMMDTMDVENNSTLEKHSGKRRKKRRHR 540
QEPENKKCSCVMCFPKGVPRSQEARTESSQASDMMDTMDVENNSTLEKHSGKRRKKRRHR
Sbjct: 481 QEPENKKCSCVMCFPKGVPRSQEARTESSQASDMMDTMDVENNSTLEKHSGKRRKKRRHR 540
Query: 541 SKVNGLQRGRKKDRPRKHLTLNNKVQKKRWQQRGRKANTRPLKRRRKRGPRIPKDENINF 600
SKVNGLQRGRKKDRPRKHLTLNNKVQKKRWQQRGRKANTRPLKRRRKRGPRIPKDENINF
Sbjct: 541 SKVNGLQRGRKKDRPRKHLTLNNKVQKKRWQQRGRKANTRPLKRRRKRGPRIPKDENINF 600
Query: 601 KQSELPVTCGEVKGTLYKERFKQGTSKKCIQSEDKKWFTPREFEIEGDRGASKNWKLSIR 660
KQSELPVTCGEVKGTLYKERFKQGTSKKCIQSEDKKWFTPREFEIEGDRGASKNWKLSIR
Sbjct: 601 KQSELPVTCGEVKGTLYKERFKQGTSKKCIQSEDKKWFTPREFEIEGDRGASKNWKLSIR 660
Query: 661 CGGYTLKVLMENKFLPEPPSTRKKRILESHNNTLVDPCPEN 701
CGGYTLKVLMENKFLPEPPSTRKKRILESHNNTLVDPC E+
Sbjct: 661 CGGYTLKVLMENKFLPEPPSTRKKRILESHNNTLVDPCEEH 701
>gi|217330601 SP140 nuclear body protein isoform 1 [Homo sapiens]
Length = 867
Score = 567 bits (1460), Expect = e-161
Identities = 366/908 (40%), Positives = 485/908 (53%), Gaps = 137/908 (15%)
Query: 40 EDQGVDDRLLYDIVFKHFKRNKVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNL 99
E Q + +++ + +F+ F+ NKVEI++AI + FPFL GLRDR I+ +M+E Q++ RNL
Sbjct: 29 EGQNLQEQVCPEPIFRFFRENKVEIASAITRPFPFLMGLRDRSFISEQMYEHFQEAFRNL 88
Query: 100 VPVQRVVYNVLSELEKTFNLPVLEALFSDVNMQEYPDLIHIYKGFENVIHDKLPLQESEE 159
VPV RV+Y VLSELEKTF LEALFS +N+ YPDL IY+ F+NV ++ PLQ +
Sbjct: 89 VPVTRVMYCVLSELEKTFGWSHLEALFSRINLMAYPDLNEIYRSFQNVCYEHSPLQMNNV 148
Query: 160 EEREERSGLQLSLEQGTGENSFRSLTWPPSGSPSHAGTTPP--ENGLSEHPCETEQINAK 217
+ E+R L L G ENS P A ++ P E G S CE +
Sbjct: 149 NDLEDRPRL---LPYGKQENSNACHEMDDIAVPQEALSSSPRCEPGFSSESCEQLALPKA 205
Query: 218 RKDTTSDKDDSLGSQQTNEQCAQKAEPTESCEQIAVQVNNGDAGREMPCPLPCDEESPEA 277
D L SC+ +A+Q++ G++ EMP LP D E
Sbjct: 206 GGGDAEDAPSLLPGGGV------------SCK-LAIQIDEGES-EEMPKLLPYDTEV--- 248
Query: 278 ELHNHGIQINSCSVRLVDIKKEKPFSNSKVECQAQARTHHNQASDIIVISSEDSEGSTDV 337
L ++G+ I + +S + E Q + ++ ++D E +
Sbjct: 249 -LESNGM-----------IDAARTYSTAPGEKQGEEEGRNSPRK-----RNQDKEKYQES 291
Query: 338 DEPLEVFISAPRSEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESFKK 397
E R + + P +N E E ++ C P E D
Sbjct: 292 PEG--------RDKETFDLKTPQVTN-EGEPEKGLCLLPGEGEEGSD------------- 329
Query: 398 RVIGQDHDFSESSEEEAPAEASS-----GALRSKHGEKAPMTSRSTSTWRIPSRKRRF-- 450
D SE + E P EASS G++ E + + + P ++
Sbjct: 330 -------DCSEMCDGEEPQEASSSLARCGSVSCLSAETFDLKTPQVTNEGEPEKELSLLP 382
Query: 451 -----SSSDFSDLSNGEELQETCSSSLRRGS----------------------------- 476
S D S++ +GEE QE SS RRGS
Sbjct: 383 GEGEEGSDDCSEMCDGEERQEASSSLARRGSVSSELENHPMNEEGESEELASSLLYDNVP 442
Query: 477 GSQPQEPENKKCSCVMCFPKGVPRSQEARTESSQASDMMDTMDVENNSTLEKHSGKRRKK 536
G++ EN+KCSCVMCF + VP S EARTES QA MDT+D+ NNSTL K KRRKK
Sbjct: 443 GAEQSAYENEKCSCVMCFSEEVPGSPEARTESDQACGTMDTVDIANNSTLGKPKRKRRKK 502
Query: 537 RRH---RSKVNGLQRGRKKDRPR---------KHLTLNNK-VQKKRWQQRGR------KA 577
R H R ++ + ++ D + K +N K + K R ++RG+ ++
Sbjct: 503 RGHGWSRMRMRRQENSQQNDNSKADGQVVSSEKKANVNLKDLSKIRGRKRGKPGTRFTQS 562
Query: 578 NTRPLKRRRKRGPRIPKDENINFKQSELPVTCGEVKGTLYKERFKQGTSKKCIQSEDKKW 637
+ KR R R R KDE ++FK LPVTCG VKG L+K++ +QG KCIQ+ED KW
Sbjct: 563 DRAAQKRVRSRASRKHKDETVDFKAPLLPVTCGGVKGILHKKKLQQGILVKCIQTEDGKW 622
Query: 638 FTPREFEIEGDRGASKNWKLSIRCGGYTLKVLMENKFLPEPPSTR---KKRILESHNNTL 694
FTP EFEI+G SKNW+LS+RCGG+ L+ LMEN FLP+PP R KKRIL+S NN+
Sbjct: 623 FTPTEFEIKGGHARSKNWRLSVRCGGWPLRWLMENGFLPDPPRIRYRKKKRILKSQNNSS 682
Query: 695 VDPCPENSNICEVCNKWGRLFCCDTCPRSFHEHCHIPSVEANKNPWSCIFCRIKTIQERC 754
VDPC N + CEVC G LFCCDTC R FHE CHIP VEA + PW+CIFCR+K
Sbjct: 683 VDPCMRNLDECEVCRDGGELFCCDTCSRVFHEDCHIPPVEAERTPWNCIFCRMK----ES 738
Query: 755 PESQSGHQESEVLMRQMLPEEQLKCEFLLLKVYCDSKSCFFASEPYYN--REGSQGPQKP 812
P SQ QESEVL RQM PEEQLKCEFLLLKVYC S+S FFA PYY RE QG ++P
Sbjct: 739 PGSQQCCQESEVLERQMCPEEQLKCEFLLLKVYCCSESSFFAKIPYYYYIREACQGLKEP 798
Query: 813 MWLNKVKTSLNEQMYTRVEGFVQDMRLIFHNHKEFYREDKFTRLGIQVQDIFEKNFRNIF 872
MWL+K+K LNE Y +VEGFVQDMRLIF NH+ Y+ F ++G +++ FEKNF+ +F
Sbjct: 799 MWLDKIKKRLNEHGYPQVEGFVQDMRLIFQNHRASYKYKDFGQMGFRLEAEFEKNFKEVF 858
Query: 873 AIQETSKN 880
AIQET+ N
Sbjct: 859 AIQETNGN 866
>gi|134133279 SP140 nuclear body protein-like [Homo sapiens]
Length = 580
Score = 407 bits (1046), Expect = e-113
Identities = 218/407 (53%), Positives = 267/407 (65%), Gaps = 28/407 (6%)
Query: 498 VPRSQEARTESSQASDMMDTMDVENNSTLEKHSGKRRKKRRH-------RSKVNGLQRGR 550
VP S EAR ES QA MDT+D+ NNSTL K KRRKK+ H R++ N Q
Sbjct: 177 VPESPEARKESDQACGKMDTVDIANNSTLGKPKRKRRKKKGHGWSRMGTRTQKNNQQNDN 236
Query: 551 KKD-----RPRKHLTLNNK-VQKKRWQQRGR------KANTRPLKRRRKRGPRIPKDENI 598
K K +N K + K R ++RG+ +++ P KR R R R KDE +
Sbjct: 237 SKADGQLVSSEKKANMNLKDLSKIRGRKRGKPGTHFTQSDRAPQKRVRSRASRKHKDETV 296
Query: 599 NFKQSELPVTCGEVKGTLYKERFKQGTSKKCIQSEDKKWFTPREFEIEGDRGASKNWKLS 658
+F+ LPVTCG VKG L+KE+ +QGT KCIQ+ED KWFTP EFEI+G SKNW+LS
Sbjct: 297 DFQAPLLPVTCGGVKGILHKEKLEQGTLAKCIQTEDGKWFTPMEFEIKGGYARSKNWRLS 356
Query: 659 IRCGGYTLKVLMENKFLPEPPS---TRKKRILESHNNTLVDPCPENSNICEVCNKWGRLF 715
+RCGG+ L+ LME LP PP KKRIL+S NN+ VDPC N + CEVC G LF
Sbjct: 357 VRCGGWPLRRLMEEGSLPNPPRIYYRNKKRILKSQNNSSVDPCMRNLDECEVCRDGGELF 416
Query: 716 CCDTCPRSFHEHCHIPSVEANKNPWSCIFCRIKTIQERCPESQSGHQESEVLMRQMLPEE 775
CCDTC R FHE CHIP VE+ K PW+CIFCR+K P SQ QESEVL RQM PEE
Sbjct: 417 CCDTCSRVFHEDCHIPPVESEKTPWNCIFCRMK----ESPGSQQCCQESEVLERQMCPEE 472
Query: 776 QLKCEFLLLKVYCDSKSCFFASEPYYN--REGSQGPQKPMWLNKVKTSLNEQMYTRVEGF 833
QLKCEFLLLKVYC S+S FFA PYY RE QG ++PMWL+K+K LNE Y +VEGF
Sbjct: 473 QLKCEFLLLKVYCCSESSFFAKIPYYYYIREACQGLKEPMWLDKIKKRLNEHGYPQVEGF 532
Query: 834 VQDMRLIFHNHKEFYREDKFTRLGIQVQDIFEKNFRNIFAIQETSKN 880
VQDMRLIF NH+ Y+ F ++G++++ FEK+F+ +FAIQET+ N
Sbjct: 533 VQDMRLIFQNHRASYKYKDFGQMGLRLEAEFEKDFKEVFAIQETNGN 579
Score = 285 bits (729), Expect = 1e-76
Identities = 141/175 (80%), Positives = 156/175 (89%)
Query: 1 MAGGGGDLSTRRLNECISPVANEMNHLPAHSHDLQRMFTEDQGVDDRLLYDIVFKHFKRN 60
MAGGG DLSTR LN +S VANEMNHLPAHS LQR+FTEDQ VD+ L+YD VFKHFKR+
Sbjct: 1 MAGGGSDLSTRGLNGGVSQVANEMNHLPAHSQSLQRLFTEDQDVDEGLVYDTVFKHFKRH 60
Query: 61 KVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNLVPVQRVVYNVLSELEKTFNLP 120
K+EISNAIKKTFPFLEGLRDR+LITNKMFEDS+DSCRNLVPVQRVVYNVLSELEKTFNL
Sbjct: 61 KLEISNAIKKTFPFLEGLRDRELITNKMFEDSEDSCRNLVPVQRVVYNVLSELEKTFNLS 120
Query: 121 VLEALFSDVNMQEYPDLIHIYKGFENVIHDKLPLQESEEEEREERSGLQLSLEQG 175
VLEALFS+VNMQEYPDLIHIYK F+N I DKL QES+ +EREER ++LSL+QG
Sbjct: 121 VLEALFSEVNMQEYPDLIHIYKSFKNAIQDKLSFQESDRKEREERPDIKLSLKQG 175
>gi|190343006 SP110 nuclear body protein isoform c [Homo sapiens]
Length = 713
Score = 358 bits (919), Expect = 1e-98
Identities = 259/841 (30%), Positives = 391/841 (46%), Gaps = 150/841 (17%)
Query: 47 RLLYDIVFKHFKRNKVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNLVPVQRVV 106
R + + +F+HF K+ I+ AI K FPF EGL D +IT +M+ +S ++CRNL+PV RVV
Sbjct: 6 RAMEEALFQHFMHQKLGIAYAIHKPFPFFEGLLDNSIITKRMYMESLEACRNLIPVSRVV 65
Query: 107 YNVLSELEKTFNLPVLEALFSDVNMQEYPDLIHIYKGFENVIHDKLPLQESEEEEREERS 166
+N+L++LE+TFNL +L LFS +N++EYP+L+ IY+ F+ V ER+ R
Sbjct: 66 HNILTQLERTFNLSLLVTLFSQINLREYPNLVTIYRSFKRV---------GASYERQSRD 116
Query: 167 GLQLSLEQGTGENSFRSLTWPPSGSPSHAGTTPPENGLSEHPCETEQINAKRKDTTSDKD 226
+ LE TG SL P + P PP+ S PC +
Sbjct: 117 -TPILLEAPTGLAEGSSLHTPLALPPPQ----PPQPSCS--PCAPRV-----------SE 158
Query: 227 DSLGSQQTNEQCAQKAEPTESCEQIAVQVNNGDAGREMPCPLPCDEESPEAELHNHGIQI 286
SQQ++E ++ P++ + + G
Sbjct: 159 PGTSSQQSDEILSESPSPSDPVLPLPALIQEG---------------------------- 190
Query: 287 NSCSVRLVDIKKEKPFSNSKVECQAQARTHHNQASDIIVISSEDSEGSTDVDEPLEVFIS 346
S SV + + E + + ASD ++ D E +P E+ S
Sbjct: 191 RSTSVTNDKLTSKMNAEEDSEEMPSLLTSTVQVASDNLIPQIRDKE------DPQEMPHS 244
Query: 347 APRSEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESFKKRVIGQDHDF 406
S P I +++P E ND +E QE + + P +K +KR I +
Sbjct: 245 PLGSMPEIRDNSP-EPNDPEEPQEVSST-----PSDKKGKK--------RKRCI-----W 285
Query: 407 SESSEEEAPAEASSGALRSKHG--------EKAPMTSRSTSTWRIPSRKRRFSSSDFSDL 458
S G S+HG ++ P ++ + + + ++ +
Sbjct: 286 STPKRRHKKKSLPGGTASSRHGIQKKLKRVDQVPQKKDDSTCNSTVETRAQKARTECARK 345
Query: 459 SNGEELQETCSSSLRRGSGSQPQEPENKKCSCVMCFP-KGVPRSQEARTESSQASDMMDT 517
S EE+ + +S + G SQ ++ + P G+ + + +Q D
Sbjct: 346 SRSEEIIDG-TSEMNEGKRSQKTPSTPRRVTQGAASPGHGIQEKLQVVDKVTQRKD---- 400
Query: 518 MDVENNSTLEKHSGKRRKKRRHRSKVNGLQRGRKKDRPRKHLTLNNKVQKKRWQQRGRKA 577
D NS + K R K +S R ++K + + + + + +K +RG+
Sbjct: 401 -DSTWNSEVMMRVQKARTKCARKS------RSKEKKKEKDICSSSKRRFQKNIHRRGK-- 451
Query: 578 NTRPLKRRRKRGPRIPKDENINFKQSELPVTCGEVKGTLYKERFKQGTSKKCIQSEDKKW 637
PK + ++F S+LPVTCGE KG LYK++ K G+S KCI++ED W
Sbjct: 452 ---------------PKSDTVDFHCSKLPVTCGEAKGILYKKKMKHGSSVKCIRNEDGTW 496
Query: 638 FTPREFEIEGDRGASKNWKLSIRCGGYTLKVLMENKFLPEPPSTRKKRILESHNNTLVDP 697
TP EFE+EG +KNWK +IRC G TL L++ K
Sbjct: 497 LTPNEFEVEGKGRNAKNWKRNIRCEGMTLGELLKRK------------------------ 532
Query: 698 CPENSNICEVCNKWGRLFCCDTCPRSFHEHCHIPSVEANKNPWSCIFCRIKTIQERCPES 757
NS+ CEVC + G+L CC TCPR FHE CHIP VEA + WSC FCR+K R S
Sbjct: 533 ---NSDECEVCCQGGQLLCCGTCPRVFHEDCHIPPVEAKRMLWSCTFCRMK----RSSGS 585
Query: 758 QSGHQESEVLMRQMLPEEQLKCEFLLLKVYCDSKSCFFASEPYYNREGSQGPQKPMWLNK 817
Q H S+ L RQM P++QLKCEFLLLK YC +S FF P+ R+ + Q+ MWL+
Sbjct: 586 QQCHHVSKTLERQMQPQDQLKCEFLLLKAYCHPQSSFFTGIPFNIRDYGEPFQEAMWLDL 645
Query: 818 VKTSLNEQMYTRVEGFVQDMRLIFHNHKEFYREDKFTRLGIQVQDIFEKNFRNIFAIQET 877
VK L +MYT V FV+DMRL+F NHK FY+ F ++G+ ++ FEK+ +++ E
Sbjct: 646 VKERLITEMYT-VAWFVRDMRLMFRNHKTFYKASDFGQVGLDLEAEFEKDLKDVLGFHEA 704
Query: 878 S 878
+
Sbjct: 705 N 705
>gi|190343010 SP110 nuclear body protein isoform a [Homo sapiens]
Length = 689
Score = 317 bits (813), Expect = 2e-86
Identities = 246/841 (29%), Positives = 377/841 (44%), Gaps = 174/841 (20%)
Query: 47 RLLYDIVFKHFKRNKVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNLVPVQRVV 106
R + + +F+HF K+ I+ AI K FPF EGL D +IT +M+ +S ++CRNL+PV RVV
Sbjct: 6 RAMEEALFQHFMHQKLGIAYAIHKPFPFFEGLLDNSIITKRMYMESLEACRNLIPVSRVV 65
Query: 107 YNVLSELEKTFNLPVLEALFSDVNMQEYPDLIHIYKGFENVIHDKLPLQESEEEEREERS 166
+N+L++LE+TFNL +L LFS +N++EYP+L+ IY+ F+ V ER+ R
Sbjct: 66 HNILTQLERTFNLSLLVTLFSQINLREYPNLVTIYRSFKRV---------GASYERQSRD 116
Query: 167 GLQLSLEQGTGENSFRSLTWPPSGSPSHAGTTPPENGLSEHPCETEQINAKRKDTTSDKD 226
+ LE TG SL P + P PP+ S PC +
Sbjct: 117 -TPILLEAPTGLAEGSSLHTPLALPPPQ----PPQPSCS--PCAPRV-----------SE 158
Query: 227 DSLGSQQTNEQCAQKAEPTESCEQIAVQVNNGDAGREMPCPLPCDEESPEAELHNHGIQI 286
SQQ++E ++ P++ + + G
Sbjct: 159 PGTSSQQSDEILSESPSPSDPVLPLPALIQEG---------------------------- 190
Query: 287 NSCSVRLVDIKKEKPFSNSKVECQAQARTHHNQASDIIVISSEDSEGSTDVDEPLEVFIS 346
S SV + + E + + ASD ++ D E +P E+ S
Sbjct: 191 RSTSVTNDKLTSKMNAEEDSEEMPSLLTSTVQVASDNLIPQIRDKE------DPQEMPHS 244
Query: 347 APRSEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESFKKRVIGQDHDF 406
S P I +++P E ND +E QE + + P +K +KR I +
Sbjct: 245 PLGSMPEIRDNSP-EPNDPEEPQEVSST-----PSDKKGKK--------RKRCI-----W 285
Query: 407 SESSEEEAPAEASSGALRSKHG--------EKAPMTSRSTSTWRIPSRKRRFSSSDFSDL 458
S G S+HG ++ P ++ + + + ++ +
Sbjct: 286 STPKRRHKKKSLPGGTASSRHGIQKKLKRVDQVPQKKDDSTCNSTVETRAQKARTECARK 345
Query: 459 SNGEELQETCSSSLRRGSGSQPQEPENKKCSCVMCFP-KGVPRSQEARTESSQASDMMDT 517
S EE+ + +S + G SQ ++ + P G+ + + +Q D
Sbjct: 346 SRSEEIIDG-TSEMNEGKRSQKTPSTPRRVTQGAASPGHGIQEKLQVVDKVTQRKD---- 400
Query: 518 MDVENNSTLEKHSGKRRKKRRHRSKVNGLQRGRKKDRPRKHLTLNNKVQKKRWQQRGRKA 577
D NS + K R K +S R ++K + + + + + +K +RG+
Sbjct: 401 -DSTWNSEVMMRVQKARTKCARKS------RSKEKKKEKDICSSSKRRFQKNIHRRGK-- 451
Query: 578 NTRPLKRRRKRGPRIPKDENINFKQSELPVTCGEVKGTLYKERFKQGTSKKCIQSEDKKW 637
PK + ++F S+LPVTCGE KG LYK++ K G+S KCI++ED W
Sbjct: 452 ---------------PKSDTVDFHCSKLPVTCGEAKGILYKKKMKHGSSVKCIRNEDGTW 496
Query: 638 FTPREFEIEGDRGASKNWKLSIRCGGYTLKVLMENKFLPEPPSTRKKRILESHNNTLVDP 697
TP EFE+EG +KNWK +IRC G TL L++ K
Sbjct: 497 LTPNEFEVEGKGRNAKNWKRNIRCEGMTLGELLKRK------------------------ 532
Query: 698 CPENSNICEVCNKWGRLFCCDTCPRSFHEHCHIPSVEANKNPWSCIFCRIKTIQERCPES 757
NS+ CEVC + G+L CC TCPR FHE CHIP VEA + WSC FCR+K R S
Sbjct: 533 ---NSDECEVCCQGGQLLCCGTCPRVFHEDCHIPPVEAKRMLWSCTFCRMK----RSSGS 585
Query: 758 QSGHQESEVLMRQMLPEEQLKCEFLLLKVYCDSKSCFFASEPYYNREGSQGPQKPMWLNK 817
Q H S+ L RQM P++QL ++ EP+ Q+ MWL+
Sbjct: 586 QQCHHVSKTLERQMQPQDQLIRDY---------------GEPF---------QEAMWLDL 621
Query: 818 VKTSLNEQMYTRVEGFVQDMRLIFHNHKEFYREDKFTRLGIQVQDIFEKNFRNIFAIQET 877
VK L +MYT V FV+DMRL+F NHK FY+ F ++G+ ++ FEK+ +++ E
Sbjct: 622 VKERLITEMYT-VAWFVRDMRLMFRNHKTFYKASDFGQVGLDLEAEFEKDLKDVLGFHEA 680
Query: 878 S 878
+
Sbjct: 681 N 681
>gi|190343008 SP110 nuclear body protein isoform b [Homo sapiens]
Length = 549
Score = 206 bits (525), Expect = 6e-53
Identities = 178/652 (27%), Positives = 283/652 (43%), Gaps = 118/652 (18%)
Query: 47 RLLYDIVFKHFKRNKVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNLVPVQRVV 106
R + + +F+HF K+ I+ AI K FPF EGL D +IT +M+ +S ++CRNL+PV RVV
Sbjct: 6 RAMEEALFQHFMHQKLGIAYAIHKPFPFFEGLLDNSIITKRMYMESLEACRNLIPVSRVV 65
Query: 107 YNVLSELEKTFNLPVLEALFSDVNMQEYPDLIHIYKGFENVIHDKLPLQESEEEEREERS 166
+N+L++LE+TFNL +L LFS +N++EYP+L+ IY+ F+ V ER+ R
Sbjct: 66 HNILTQLERTFNLSLLVTLFSQINLREYPNLVTIYRSFKRV---------GASYERQSRD 116
Query: 167 GLQLSLEQGTGENSFRSLTWPPSGSPSHAGTTPPENGLSEHPCETEQINAKRKDTTSDKD 226
+ LE TG SL P + P PP+ S PC +
Sbjct: 117 -TPILLEAPTGLAEGSSLHTPLALPPPQ----PPQPSCS--PCAPRV-----------SE 158
Query: 227 DSLGSQQTNEQCAQKAEPTESCEQIAVQVNNGDAGREMPCPLPCDEESPEAELHNHGIQI 286
SQQ++E ++ P++ + + G
Sbjct: 159 PGTSSQQSDEILSESPSPSDPVLPLPALIQEG---------------------------- 190
Query: 287 NSCSVRLVDIKKEKPFSNSKVECQAQARTHHNQASDIIVISSEDSEGSTDVDEPLEVFIS 346
S SV + + E + + ASD ++ D E +P E+ S
Sbjct: 191 RSTSVTNDKLTSKMNAEEDSEEMPSLLTSTVQVASDNLIPQIRDKE------DPQEMPHS 244
Query: 347 APRSEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESFKKRVIGQDHDF 406
S P I +++P E ND +E QE + + P +K +KR I +
Sbjct: 245 PLGSMPEIRDNSP-EPNDPEEPQEVSST-----PSDKKGKK--------RKRCI-----W 285
Query: 407 SESSEEEAPAEASSGALRSKHG--------EKAPMTSRSTSTWRIPSRKRRFSSSDFSDL 458
S G S+HG ++ P ++ + + + ++ +
Sbjct: 286 STPKRRHKKKSLPGGTASSRHGIQKKLKRVDQVPQKKDDSTCNSTVETRAQKARTECARK 345
Query: 459 SNGEELQETCSSSLRRGSGSQPQEPENKKCSCVMCFP-KGVPRSQEARTESSQASDMMDT 517
S EE+ + +S + G SQ ++ + P G+ + + +Q D
Sbjct: 346 SRSEEIIDG-TSEMNEGKRSQKTPSTPRRVTQGAASPGHGIQEKLQVVDKVTQRKD---- 400
Query: 518 MDVENNSTLEKHSGKRRKKRRHRSKVNGLQRGRKKDRPRKHLTLNNKVQKKRWQQRGRKA 577
D NS + K R K +S R ++K + + + + + +K +RG+
Sbjct: 401 -DSTWNSEVMMRVQKARTKCARKS------RSKEKKKEKDICSSSKRRFQKNIHRRGK-- 451
Query: 578 NTRPLKRRRKRGPRIPKDENINFKQSELPVTCGEVKGTLYKERFKQGTSKKCIQSEDKKW 637
PK + ++F S+LPVTCGE KG LYK++ K G+S KCI++ED W
Sbjct: 452 ---------------PKSDTVDFHCSKLPVTCGEAKGILYKKKMKHGSSVKCIRNEDGTW 496
Query: 638 FTPREFEIEGDRGASKNWKLSIRCGGYTLKVLMENKFLPEPPSTRKKRILES 689
TP EFE+EG +KNWK +IRC G TL L+++ L PP KR L S
Sbjct: 497 LTPNEFEVEGKGRNAKNWKRNIRCEGMTLGELLKSGLLLCPPRINLKRELNS 548
>gi|52487277 SP140 nuclear body protein isoform 2 [Homo sapiens]
Length = 172
Score = 117 bits (292), Expect = 6e-26
Identities = 57/107 (53%), Positives = 78/107 (72%)
Query: 40 EDQGVDDRLLYDIVFKHFKRNKVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNL 99
E Q + +++ + +F+ F+ NKVEI++AI + FPFL GLRDR I+ +M+E Q++ RNL
Sbjct: 29 EGQNLQEQVCPEPIFRFFRENKVEIASAITRPFPFLMGLRDRSFISEQMYEHFQEAFRNL 88
Query: 100 VPVQRVVYNVLSELEKTFNLPVLEALFSDVNMQEYPDLIHIYKGFEN 146
VPV RV+Y VLSELEKTF LEALFS +N+ YPDL IY+ F+N
Sbjct: 89 VPVTRVMYCVLSELEKTFGWSHLEALFSRINLMAYPDLNEIYRSFQN 135
>gi|47419911 transcriptional intermediary factor 1 alpha isoform a
[Homo sapiens]
Length = 1050
Score = 99.8 bits (247), Expect = 1e-20
Identities = 62/182 (34%), Positives = 94/182 (51%), Gaps = 11/182 (6%)
Query: 701 NSNICEVCNKWGRLFCCDTCPRSFHEHCHIPSV-EANKNPWSCIFCRIKTIQE-----RC 754
N + C VC G L CC+ CP+ FH CH+P++ W C FCR + E
Sbjct: 825 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDCDA 884
Query: 755 PESQSGHQESEVLMRQMLPEEQLKCEFLLLKVYCDSKSCFFASE-PYYNREGSQGPQKPM 813
P S +++E L++ + P ++ KCE LLL +YC S F P + + + PM
Sbjct: 885 PSHNSEKKKTEGLVK-LTPIDKRKCERLLLFLYCHEMSLAFQDPVPLTVPDYYKIIKNPM 943
Query: 814 WLNKVKTSLNE--QMYTRVEGFVQDMRLIFHNHKEFYRED-KFTRLGIQVQDIFEKNFRN 870
L+ +K L E MY++ E FV D RLIF N EF D + GI++++ FE+ +N
Sbjct: 944 DLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKN 1003
Query: 871 IF 872
++
Sbjct: 1004 LY 1005
>gi|47419909 transcriptional intermediary factor 1 alpha isoform b
[Homo sapiens]
Length = 1016
Score = 99.8 bits (247), Expect = 1e-20
Identities = 62/182 (34%), Positives = 94/182 (51%), Gaps = 11/182 (6%)
Query: 701 NSNICEVCNKWGRLFCCDTCPRSFHEHCHIPSV-EANKNPWSCIFCRIKTIQE-----RC 754
N + C VC G L CC+ CP+ FH CH+P++ W C FCR + E
Sbjct: 791 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDCDA 850
Query: 755 PESQSGHQESEVLMRQMLPEEQLKCEFLLLKVYCDSKSCFFASE-PYYNREGSQGPQKPM 813
P S +++E L++ + P ++ KCE LLL +YC S F P + + + PM
Sbjct: 851 PSHNSEKKKTEGLVK-LTPIDKRKCERLLLFLYCHEMSLAFQDPVPLTVPDYYKIIKNPM 909
Query: 814 WLNKVKTSLNE--QMYTRVEGFVQDMRLIFHNHKEFYRED-KFTRLGIQVQDIFEKNFRN 870
L+ +K L E MY++ E FV D RLIF N EF D + GI++++ FE+ +N
Sbjct: 910 DLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKN 969
Query: 871 IF 872
++
Sbjct: 970 LY 971
>gi|74027251 tripartite motif-containing 33 protein isoform beta [Homo
sapiens]
Length = 1110
Score = 95.1 bits (235), Expect = 3e-19
Identities = 93/308 (30%), Positives = 128/308 (41%), Gaps = 39/308 (12%)
Query: 594 KDENINFKQSELPVTCGEV---KGTLYKERFKQGTSKKCIQSEDKKWFTPR-----EFEI 645
K + + KQ P T E+ G + +E+ + G C+ S + TP E
Sbjct: 769 KSDQVKVKQE--PGTEDEICSFSGGVKQEKTEDGRRSACMLSSPESSLTPPLSTNLHLES 826
Query: 646 EGDRGASKNWKLSIR-------CGGYTLKVLMENKFLPEPPSTRKKRILESHNNTLVDPC 698
E D AS + I C L L+ K R RI NN DP
Sbjct: 827 ELDALASLENHVKIEPADMNESCKQSGLSSLVNGKSPIRSLMHRSARIGGDGNNKDDDP- 885
Query: 699 PENSNICEVCNKWGRLFCCDTCPRSFHEHCHIPS-VEANKNPWSCIFCR---IKTIQERC 754
N + C VC G L CC+ CP+ FH CH+P+ + W C FCR ++ C
Sbjct: 886 --NEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVEYDC 943
Query: 755 PESQSGHQESEVLMRQMLPEEQLKCEFLLLKVYCDSKSCFF-----ASEPYYNREGSQGP 809
Q H + + + P +Q KCE LLL +YC S F AS P Y +
Sbjct: 944 DNLQ--HSKKGKTAQGLSPVDQRKCERLLLYLYCHELSIEFQEPVPASIPNYYKI----I 997
Query: 810 QKPMWLNKVKTSL---NEQMYTRVEGFVQDMRLIFHNHKEFYRED-KFTRLGIQVQDIFE 865
+KPM L+ VK L + Q Y + FV D+RLIF N + F D + + G V FE
Sbjct: 998 KKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEADSEVAQAGKAVALYFE 1057
Query: 866 KNFRNIFA 873
I++
Sbjct: 1058 DKLTEIYS 1065
>gi|74027249 tripartite motif-containing 33 protein isoform alpha
[Homo sapiens]
Length = 1127
Score = 94.4 bits (233), Expect = 4e-19
Identities = 90/297 (30%), Positives = 124/297 (41%), Gaps = 38/297 (12%)
Query: 594 KDENINFKQSELPVTCGEV---KGTLYKERFKQGTSKKCIQSEDKKWFTPR-----EFEI 645
K + + KQ P T E+ G + +E+ + G C+ S + TP E
Sbjct: 769 KSDQVKVKQE--PGTEDEICSFSGGVKQEKTEDGRRSACMLSSPESSLTPPLSTNLHLES 826
Query: 646 EGDRGASKNWKLSIR-------CGGYTLKVLMENKFLPEPPSTRKKRILESHNNTLVDPC 698
E D AS + I C L L+ K R RI NN DP
Sbjct: 827 ELDALASLENHVKIEPADMNESCKQSGLSSLVNGKSPIRSLMHRSARIGGDGNNKDDDP- 885
Query: 699 PENSNICEVCNKWGRLFCCDTCPRSFHEHCHIPS-VEANKNPWSCIFCR---IKTIQERC 754
N + C VC G L CC+ CP+ FH CH+P+ + W C FCR ++ C
Sbjct: 886 --NEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVEYDC 943
Query: 755 PESQSGHQESEVLMRQMLPEEQLKCEFLLLKVYCDSKSCFF-----ASEPYYNREGSQGP 809
Q H + + + P +Q KCE LLL +YC S F AS P Y +
Sbjct: 944 DNLQ--HSKKGKTAQGLSPVDQRKCERLLLYLYCHELSIEFQEPVPASIPNYYKI----I 997
Query: 810 QKPMWLNKVKTSL---NEQMYTRVEGFVQDMRLIFHNHKEFYREDKFTRLGIQVQDI 863
+KPM L+ VK L + Q Y + FV D+RLIF N + F K ++ Q+I
Sbjct: 998 KKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEMMKVVQVYADTQEI 1054
>gi|209977097 tripartite motif-containing 66 [Homo sapiens]
Length = 1216
Score = 79.3 bits (194), Expect = 1e-14
Identities = 66/216 (30%), Positives = 98/216 (45%), Gaps = 30/216 (13%)
Query: 671 ENKFLPEPPSTRKKRILESHNNTLVDPCP-ENSNICEVCNKWGRLFCCDTCPRSFHEHCH 729
E++ +P P +K P P EN + C VC G L CCD CP+ FH CH
Sbjct: 949 EHRLIPRTPGAKKG-----------PPAPIENEDFCAVCLNGGELLCCDRCPKVFHLSCH 997
Query: 730 IPS-VEANKNPWSCIFCRIKTIQER---CPE---SQSGHQESEVLMRQMLPEEQLKCEFL 782
+P+ + W C CR T E C +Q G + S L +Q KCE L
Sbjct: 998 VPALLSFPGGEWVCTLCRSLTQPEMEYDCENACYNQPGMRASPGLSMY----DQKKCEKL 1053
Query: 783 LLKVYCDSKSCFFASEPY--YNREGSQGPQKPMWLNKVKTSLNEQ---MYTRVEGFVQDM 837
+L + C++ S F EP R Q ++PM L+ ++ L ++ YT E V D+
Sbjct: 1054 VLSLCCNNLSLPF-HEPVSPLARHYYQIIKRPMDLSIIRRKLQKKDPAHYTTPEEVVSDV 1112
Query: 838 RLIFHNHKEF-YREDKFTRLGIQVQDIFEKNFRNIF 872
RL+F N +F Y + + G ++ FE + I+
Sbjct: 1113 RLMFWNCAKFNYPDSEVAEAGRCLEVFFEGWLKEIY 1148
>gi|4557291 autoimmune regulator isoform 1 [Homo sapiens]
Length = 545
Score = 68.9 bits (167), Expect = 2e-11
Identities = 49/169 (28%), Positives = 74/169 (43%), Gaps = 15/169 (8%)
Query: 598 INFKQSELPVTCGEVKGTLYKERFKQGTSKKCIQSEDKKWFTPREFEIEGDRGASKNWKL 657
+ ++P G V+G L ++ F+ G SKKCIQ + ++TP +FE D G+ KN
Sbjct: 192 VAMSSGDVPGARGAVEGILIQQVFESGGSKKCIQVGGE-FYTPSKFE---DSGSGKN--- 244
Query: 658 SIRCGGYTLKVLMENKFLPEPPSTRKKRILESHNNTLVDPCP-------ENSNICEVCNK 710
R ++ P + R+ + + P +N + C VC
Sbjct: 245 KARSSSGPKPLVRAKGAQGAAPGGGEARLGQQGSVPAPLALPSDPQLHQKNEDECAVCRD 304
Query: 711 WGRLFCCDTCPRSFHEHCHIPSV-EANKNPWSCIFCRIKTIQERCPESQ 758
G L CCD CPR+FH C P + E W C C T+QE P ++
Sbjct: 305 GGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRAE 353
Score = 32.3 bits (72), Expect = 2.0
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 60 NKVEISNAIKKTFPFLEGLRDRDLITNKMFEDS-----QDSCRNLVPVQRVVYNVLSELE 114
++ EI+ A+ FP L L D D++ F+++ ++ C + + L +
Sbjct: 14 HRTEIAVAVDSAFPLLHALADHDVVPEDKFQETLHLKEKEGCPQAF---HALLSWLLTQD 70
Query: 115 KTFNLPVLEALFSDVNMQEYPDLIHIYKGF 144
T L LF D N++ Y L I F
Sbjct: 71 STAILDFWRVLFKDYNLERYGRLQPILDSF 100
Score = 32.0 bits (71), Expect = 2.6
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 673 KFLPEPPSTRKKRILES---HNNTLVDPCPENSNI----CEVCNKWGRLFCCDTCPRSFH 725
K LP PPS L+S H V P + + C VC + C C +FH
Sbjct: 395 KHLPAPPSAAPLPGLDSSALHPLLCVGPEGQQNLAPGARCGVCGDGTDVLRCTHCAAAFH 454
Query: 726 EHCHIPSVEANKNPWSCIFCR 746
CH P+ P + + CR
Sbjct: 455 WRCHFPA--GTSRPGTGLRCR 473
>gi|38016945 deformed epidermal autoregulatory factor 1 [Homo
sapiens]
Length = 565
Score = 66.6 bits (161), Expect = 1e-10
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 603 SELPVTCGEVKGTLYKERFKQGTSKKCIQSEDKKWFTPREFEIEGDRGASKNWKLSIRCG 662
SELPV C + GTLYK R G +CI+ + + W++P EFE R +SK+WK SIR
Sbjct: 201 SELPVRCRNISGTLYKNRLGSGGRGRCIK-QGENWYSPTEFEAMAGRASSKDWKRSIRYA 259
Query: 663 GYTLKVLMENKFL 675
G L+ L+++ L
Sbjct: 260 GRPLQCLIQDGIL 272
>gi|5032179 tripartite motif-containing 28 protein [Homo sapiens]
Length = 835
Score = 62.4 bits (150), Expect = 2e-09
Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 5/178 (2%)
Query: 700 ENSNICEVCNKWGRLFCCDTCPRSFHEHCHIPSV-EANKNPWSCIFCRI-KTIQERCPES 757
+++ IC VC K G L C+ C FH CH+P++ + WSC C + ++E
Sbjct: 623 DSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEEDGSL 682
Query: 758 QSGHQESEVLMRQMLPEEQLKCEFLLLKVYCDSKSCFFASEPYYNREGSQGPQKPMWLNK 817
+S ++ ++ P Q KCE +LL ++C + P + L
Sbjct: 683 SLDGADSTGVVAKLSPANQRKCERVLLALFCHEPCRPLHQLATDSTFSLDQPGGTLDLTL 742
Query: 818 VKTSLNEQM---YTRVEGFVQDMRLIFHNHKEFYREDKFTRLGIQVQDIFEKNFRNIF 872
++ L E++ Y+ + F QD+ +F + + + I +Q FE F
Sbjct: 743 IRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLTEDKADVQSIIGLQRFFETRMNEAF 800
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 60.1 bits (144), Expect = 9e-09
Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 28/196 (14%)
Query: 575 RKANTR----PLKRRRKRG-PRIPKDENINFKQ-SELPVTCGEVKGTLYKERFKQGTSKK 628
RKA T+ P RR+ +G PR+P + K+ + L + G G+ +K
Sbjct: 258 RKAKTKEGKGPNARRKPKGSPRVPDAKKPKPKKVAPLKIKLGGF-----------GSKRK 306
Query: 629 CIQSEDKKWFTPREFEIEGDRGASKNWKLSIRCGGYTLKVLMENKFLPEPPSTRKKRILE 688
SED + ++E D + S+ G + K +T+KK+ E
Sbjct: 307 RSSSEDD------DLDVESDFDDASINSYSVSDGSTSRSSRSRKKLR----TTKKKKKGE 356
Query: 689 SHNNTLVDPCPENSNICEVCNKWGRLFCCDTCPRSFHEHCHIPSVE-ANKNPWSCIFCRI 747
+ ++ + CEVC + G + CDTCPR++H C P +E A + WSC C
Sbjct: 357 EEVTAVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 416
Query: 748 KTIQERCPESQSGHQE 763
+ IQ E S +E
Sbjct: 417 EGIQWEAKEDNSEGEE 432
Score = 51.6 bits (122), Expect = 3e-06
Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 684 KRILESHNNTLVDPCPENSNICEVCNKWGRLFCCDTCPRSFHEHC-HIPSVEANKNPWSC 742
+ ILE L + + C VC G L CCDTCP S+H HC + P E W C
Sbjct: 431 EEILEEVGGDLEEEDDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLC 490
Query: 743 IFC 745
C
Sbjct: 491 PRC 493
Score = 35.4 bits (80), Expect = 0.24
Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 40/186 (21%)
Query: 187 PPSGSPSHAGTTPPENGLSEHPCET----EQINAKRKDTTS-DKDDSLGSQQTNEQCAQK 241
P + +PS G T P P E E+ + K +++ +K+ + +T +C Q
Sbjct: 1538 PKTPTPSTPGDTQPNTPAPVPPAEDGIKIEENSLKEEESIEGEKEVKSTAPETAIECTQA 1597
Query: 242 AEPTESCEQIAVQVNNGDAGREMPCPLPCDEESPEAELHNHGIQINSCSVRLVDIKKEKP 301
P E++ V+ G+ E+ +AE+ + E+P
Sbjct: 1598 PAPASEDEKVVVEPPEGE------------EKVEKAEVKE---------------RTEEP 1630
Query: 302 FSNSKVECQAQARTHHNQASDIIVISSEDSEGSTDVDEPLEVFISAPRSEPVINNDNPLE 361
+ A D+ I ED E + +E EV + N + P +
Sbjct: 1631 METEPKGAADVEKVEEKSAIDLTPIVVEDKEEKKEEEEKKEVMLQ--------NGETPKD 1682
Query: 362 SNDEKE 367
NDEK+
Sbjct: 1683 LNDEKQ 1688
>gi|4557293 autoimmune regulator isoform 2 [Homo sapiens]
Length = 348
Score = 56.2 bits (134), Expect = 1e-07
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 698 CPENSNICEVCNKWGRLFCCDTCPRSFHEHCHIPSV-EANKNPWSCIFCRIKTIQERCPE 756
C +N + C VC G L CCD CPR+FH C P + E W C C T+QE P
Sbjct: 95 CQKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPR 154
Query: 757 SQ 758
++
Sbjct: 155 AE 156
Score = 32.0 bits (71), Expect = 2.6
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 673 KFLPEPPSTRKKRILES---HNNTLVDPCPENSNI----CEVCNKWGRLFCCDTCPRSFH 725
K LP PPS L+S H V P + + C VC + C C +FH
Sbjct: 198 KHLPAPPSAAPLPGLDSSALHPLLCVGPEGQQNLAPGARCGVCGDGTDVLRCTHCAAAFH 257
Query: 726 EHCHIPSVEANKNPWSCIFCR 746
CH P+ P + + CR
Sbjct: 258 WRCHFPA--GTSRPGTGLRCR 276
>gi|34335264 zinc finger, MYND-type containing 8 isoform c [Homo
sapiens]
Length = 1135
Score = 55.8 bits (133), Expect = 2e-07
Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 14/169 (8%)
Query: 678 PPSTRKKRILESHNNTLVDPCPENSNICEVCNKWGRLFCCDTCPRSFHEHCHIPSVEANK 737
P +KK L + NN D N C VC++ G++ CC+ CPR +H C + +
Sbjct: 61 PIKKKKKPGLLNSNNKEQDG--RNDFYCWVCHREGQVLCCELCPRVYHAKC-LRLTSEPE 117
Query: 738 NPWSCIFCRIKTIQERCPESQSGHQESEVLMRQMLPEEQLK--CEFLLLKVYCDSKSCFF 795
W C C T+ E C E+QS ML EQL +F + K+ F
Sbjct: 118 GDWFCPECEKITVAE-CIETQS-------KAMTMLTIEQLSYLLKFAIQKMKQPGTDAFQ 169
Query: 796 ASEPY-YNREGSQGPQKPMWLNKVKTSLNEQMYTRVEGFVQDMRLIFHN 843
P + + ++ PM L ++ + ++MY E F+ D + I HN
Sbjct: 170 KPVPLEQHPDYAEYIFHPMDLCTLEKNAKKKMYGCTEAFLADAKWILHN 218
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 54.7 bits (130), Expect = 4e-07
Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 21/198 (10%)
Query: 575 RKANTR----PLKRRRKRGPRIPKDENINFKQSELPVTCGEVKGTLYKERFKQGTSKKCI 630
R+A T+ P +RR + PR+P + P+ ++K L + K+G S
Sbjct: 256 RRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPL---KIKLGLLGGKRKKGGSYVFQ 312
Query: 631 QSEDKKWFTPREFEIEGDRGASKNWKLSIRCGGYTLKVLMENKFLPEPPSTRKKRILESH 690
E + P E + D G+ + G + K P +KK++L
Sbjct: 313 SDEGPE---PEAEESDLDSGSVHS------ASGRPDGPVRTKKLKRGRPGRKKKKVLGCP 363
Query: 691 ---NNTLVDPCP-ENSNICEVCNKWGRLFCCDTCPRSFHEHCHIPSVE-ANKNPWSCIFC 745
VD ++ + CEVC + G + CDTCPR++H C P ++ A + WSC C
Sbjct: 364 AVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHC 423
Query: 746 RIKTIQERCPESQSGHQE 763
+ +Q E + ++E
Sbjct: 424 EKEGVQWEAKEEEEEYEE 441
Score = 42.7 bits (99), Expect = 0.001
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 700 ENSNICEVCNKWGRLFCCDTCPRSFHEHC-HIPSVEANKNPWSCIFCRIKTIQER 753
++ C VC G L CCD C S+H HC + P + W C C ++ R
Sbjct: 454 DHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGR 508
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 54.7 bits (130), Expect = 4e-07
Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 21/198 (10%)
Query: 575 RKANTR----PLKRRRKRGPRIPKDENINFKQSELPVTCGEVKGTLYKERFKQGTSKKCI 630
R+A T+ P +RR + PR+P + P+ ++K L + K+G S
Sbjct: 256 RRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPL---KIKLGLLGGKRKKGGSYVFQ 312
Query: 631 QSEDKKWFTPREFEIEGDRGASKNWKLSIRCGGYTLKVLMENKFLPEPPSTRKKRILESH 690
E + P E + D G+ + G + K P +KK++L
Sbjct: 313 SDEGPE---PEAEESDLDSGSVHS------ASGRPDGPVRTKKLKRGRPGRKKKKVLGCP 363
Query: 691 ---NNTLVDPCP-ENSNICEVCNKWGRLFCCDTCPRSFHEHCHIPSVE-ANKNPWSCIFC 745
VD ++ + CEVC + G + CDTCPR++H C P ++ A + WSC C
Sbjct: 364 AVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHC 423
Query: 746 RIKTIQERCPESQSGHQE 763
+ +Q E + ++E
Sbjct: 424 EKEGVQWEAKEEEEEYEE 441
Score = 42.7 bits (99), Expect = 0.001
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 700 ENSNICEVCNKWGRLFCCDTCPRSFHEHC-HIPSVEANKNPWSCIFCRIKTIQER 753
++ C VC G L CCD C S+H HC + P + W C C ++ R
Sbjct: 454 DHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGR 508
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 54.7 bits (130), Expect = 4e-07
Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 21/198 (10%)
Query: 575 RKANTR----PLKRRRKRGPRIPKDENINFKQSELPVTCGEVKGTLYKERFKQGTSKKCI 630
R+A T+ P +RR + PR+P + P+ ++K L + K+G S
Sbjct: 315 RRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPL---KIKLGLLGGKRKKGGSYVFQ 371
Query: 631 QSEDKKWFTPREFEIEGDRGASKNWKLSIRCGGYTLKVLMENKFLPEPPSTRKKRILESH 690
E + P E + D G+ + G + K P +KK++L
Sbjct: 372 SDEGPE---PEAEESDLDSGSVHS------ASGRPDGPVRTKKLKRGRPGRKKKKVLGCP 422
Query: 691 ---NNTLVDPCP-ENSNICEVCNKWGRLFCCDTCPRSFHEHCHIPSVE-ANKNPWSCIFC 745
VD ++ + CEVC + G + CDTCPR++H C P ++ A + WSC C
Sbjct: 423 AVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHC 482
Query: 746 RIKTIQERCPESQSGHQE 763
+ +Q E + ++E
Sbjct: 483 EKEGVQWEAKEEEEEYEE 500
Score = 42.7 bits (99), Expect = 0.001
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 700 ENSNICEVCNKWGRLFCCDTCPRSFHEHC-HIPSVEANKNPWSCIFCRIKTIQER 753
++ C VC G L CCD C S+H HC + P + W C C ++ R
Sbjct: 513 DHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGR 567
>gi|34335262 zinc finger, MYND-type containing 8 isoform a [Homo
sapiens]
Length = 1188
Score = 53.9 bits (128), Expect = 6e-07
Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 15/155 (9%)
Query: 695 VDPCPE---NSNICEVCNKWGRLFCCDTCPRSFHEHCHIPSVEANKNPWSCIFCRIKTIQ 751
VD P+ N C VC++ G++ CC+ CPR +H C + + W C C T+
Sbjct: 98 VDVVPQDGRNDFYCWVCHREGQVLCCELCPRVYHAKC-LRLTSEPEGDWFCPECEKITVA 156
Query: 752 ERCPESQSGHQESEVLMRQMLPEEQLK--CEFLLLKVYCDSKSCFFASEPY-YNREGSQG 808
E C E+QS ML EQL +F + K+ F P + + ++
Sbjct: 157 E-CIETQS-------KAMTMLTIEQLSYLLKFAIQKMKQPGTDAFQKPVPLEQHPDYAEY 208
Query: 809 PQKPMWLNKVKTSLNEQMYTRVEGFVQDMRLIFHN 843
PM L ++ + ++MY E F+ D + I HN
Sbjct: 209 IFHPMDLCTLEKNAKKKMYGCTEAFLADAKWILHN 243
>gi|34335266 zinc finger, MYND-type containing 8 isoform b [Homo
sapiens]
Length = 1160
Score = 53.9 bits (128), Expect = 6e-07
Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 15/155 (9%)
Query: 695 VDPCPE---NSNICEVCNKWGRLFCCDTCPRSFHEHCHIPSVEANKNPWSCIFCRIKTIQ 751
VD P+ N C VC++ G++ CC+ CPR +H C + + W C C T+
Sbjct: 98 VDVVPQDGRNDFYCWVCHREGQVLCCELCPRVYHAKC-LRLTSEPEGDWFCPECEKITVA 156
Query: 752 ERCPESQSGHQESEVLMRQMLPEEQLK--CEFLLLKVYCDSKSCFFASEPY-YNREGSQG 808
E C E+QS ML EQL +F + K+ F P + + ++
Sbjct: 157 E-CIETQS-------KAMTMLTIEQLSYLLKFAIQKMKQPGTDAFQKPVPLEQHPDYAEY 208
Query: 809 PQKPMWLNKVKTSLNEQMYTRVEGFVQDMRLIFHN 843
PM L ++ + ++MY E F+ D + I HN
Sbjct: 209 IFHPMDLCTLEKNAKKKMYGCTEAFLADAKWILHN 243
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 53.1 bits (126), Expect = 1e-06
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)
Query: 682 RKKRILESHNNTLVDPCPENSNICEVCNKWGRLFCCDTCPRSFHEHCHIPSVE-ANKNPW 740
RKK+ ++ + D + + CEVC + G + CDTCPR++H C P +E A + W
Sbjct: 327 RKKKRIDDGDGYETD----HQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKW 382
Query: 741 SCIFCRIKTIQ-----ERCPESQSGHQESE 765
SC C + IQ + E + G +E E
Sbjct: 383 SCPHCEKEGIQWEPKDDDDEEEEGGCEEEE 412
Score = 47.0 bits (110), Expect = 8e-05
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 700 ENSNICEVCNKWGRLFCCDTCPRSFHEHC-HIPSVEANKNPWSCIFC 745
++ C VC G L CCD CP S+H HC + P E W C C
Sbjct: 414 DHMEFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRC 460
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 52.4 bits (124), Expect = 2e-06
Identities = 73/384 (19%), Positives = 134/384 (34%), Gaps = 19/384 (4%)
Query: 150 DKLPLQESEEEEREERSGLQLSLEQGTGENSFRSLTWPPSGSPSHAGTTPPENGLSEHPC 209
D +S + + S S + NS S S S G+ + S+
Sbjct: 808 DSSDSSDSSDSDSSNSSDSSNSSDSSDSSNSSDS----SDSSDSSDGSDSDSSNRSDSSN 863
Query: 210 ETEQINAKRKDTTSDKDDSLGSQQTNEQCAQKAEPTESCEQIAVQVNNGDAGREMPCPLP 269
++ ++ +SD DS S +++ + ++ + S + + +N +
Sbjct: 864 SSDSSDSSDSSNSSDSSDSSDSNESSNS-SDSSDSSNSSDSDSSDSSNSSDSSDSSNSSD 922
Query: 270 CDEESPEAELHNHGIQINSC-SVRLVDIKKEKPFSNSKVECQAQARTHHNQASDIIVISS 328
E S ++ N NS S D SNS + + N + +S
Sbjct: 923 SSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNS 982
Query: 329 EDSEGSTDVDEPLEVFISAPRSEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFRKL 388
DS S+D + + S+ S+ ++D+ SN + S + D
Sbjct: 983 SDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSSDSSDS 1042
Query: 389 STFRESFKKRVIGQDHDFSESSEEEAPAEASSGALRSKHGEKAPMTSRSTSTWRIPSRKR 448
S +S D S+SS+ +++S + S E + + S S+ S
Sbjct: 1043 SDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSESSDSSDSSNSSDSSDSSDS 1102
Query: 449 RFS--------SSDFSDLSNGEELQETCSSSLRRGSGSQPQEPENKKCSCVMCFPKGVPR 500
S SSD SD SN + ++ SS S + ++ + S
Sbjct: 1103 SDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSSDSSESS-----DSSDSS 1157
Query: 501 SQEARTESSQASDMMDTMDVENNS 524
++SS +SD D+ D N+S
Sbjct: 1158 DSSDSSDSSDSSDSSDSSDSSNSS 1181
Score = 48.1 bits (113), Expect = 4e-05
Identities = 68/371 (18%), Positives = 130/371 (35%), Gaps = 6/371 (1%)
Query: 157 SEEEEREERSGLQLSLEQGTGENSFRSLTWPPSGSPSHAGTTPPENGLSEHPCETEQINA 216
+E+++ + S S G G N SG + + S ++ ++
Sbjct: 510 AEDDDSDSTSDTNNSDSNGNGNNGNDDNDKSDSGKGKSDSSDSDSSDSSNSSDSSDSSDS 569
Query: 217 KRKDTTSDKD-DSLGSQQTNEQCAQKAEPTESCEQIAVQVNNGDAGREMPCPLPCDEESP 275
D+ S D DS S ++ + ++ + S + ++ + D
Sbjct: 570 DSSDSNSSSDSDSSDSDSSDSSDSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSKSDSSKS 629
Query: 276 EAELHNHGIQINSCSVRLVDIKKEKPFSNSKVECQAQARTHHNQASDIIVISSEDSEGST 335
E++ + + +S D S+S + + + +SD SS DS S+
Sbjct: 630 ESDSSDSDSKSDSSDSNSSDSSDNSDSSDSSNSSNSSDSSDSSDSSDSS--SSSDSSNSS 687
Query: 336 DVDEPLEVFISAPRSEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESF 395
D + + S+ S+ ++D+ + + ++ S + D S +S
Sbjct: 688 DSSDSSDSSNSSESSDSSDSSDSDSSDSSDSSNSNSSDSDSSNSSDSSDSSNSSDSSDSS 747
Query: 396 KKRVIGQDHDFSESSEEEAPAEASSGALRSKHGEKAPMTSRSTSTWRIPSRKRRFSS--S 453
D S+SS +++S + S + S S+ S SS S
Sbjct: 748 DSSNSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSS 807
Query: 454 DFSDLSNGEELQETCSSSLRRGSGSQPQEPENKKCSCVMCFPKGVPRSQEARTESSQASD 513
D SD S+ + + SS S S + S G R++SS +SD
Sbjct: 808 DSSDSSDSSDSDSSNSSDSSNSSDSSDSS-NSSDSSDSSDSSDGSDSDSSNRSDSSNSSD 866
Query: 514 MMDTMDVENNS 524
D+ D N+S
Sbjct: 867 SSDSSDSSNSS 877
Score = 46.2 bits (108), Expect = 1e-04
Identities = 69/376 (18%), Positives = 131/376 (34%), Gaps = 13/376 (3%)
Query: 156 ESEEEEREERSGLQLSLEQGTGENSFRSLTWPPSGSPSHAGTTPPENGLSEHPCETEQIN 215
+S + S + +S S S S++ + + S++ ++ N
Sbjct: 881 DSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSN 940
Query: 216 AKRKDTTSDKDDSLGSQQTNEQCAQKAEPTESCEQIAVQVNNGDAGREMPCPLPCDEESP 275
+ +SD +S S +++ + + N+ D+ D
Sbjct: 941 SSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDSSDS 1000
Query: 276 EAELHNHGIQINSCSVRLVDIKKEKPFSNSKVECQAQARTHHNQASDIIVISSEDSEGST 335
+ +S S D SNS + + + +SD S DS S+
Sbjct: 1001 SNSSDSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSSDSSDSSDSSDSS--DSSDSSNSS 1058
Query: 336 DVDEPLEVFISAPRSEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESF 395
D + + S+ S+ ++D+ ES+D + ++ S + D S +S
Sbjct: 1059 DSSDSSDSSDSSDSSDSSDSSDSS-ESSDSSDSSNSSDSSDS--SDSSDSSDSSDSSDSS 1115
Query: 396 KKRVIGQDHDFSESSEEEAPAEASSGALRSKHGEKAPMTSRSTSTWRIPSRKRRFSSSDF 455
D S+SS+ +++S+ + S E + + S S+ S SSD
Sbjct: 1116 DSSDSSNSSDSSDSSDSSDSSDSSNSSDSSDSSESSDSSDSSDSSDSSDSSDSS-DSSDS 1174
Query: 456 SDLSNGEELQETCSSSLRRGSGSQPQEPENKKCSCVMCFPKGVPRSQEART-------ES 508
SD SN + ++ SS S ++ S S + + ES
Sbjct: 1175 SDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSNES 1234
Query: 509 SQASDMMDTMDVENNS 524
S +SD D+ D N+S
Sbjct: 1235 SDSSDSSDSSDSSNSS 1250
Score = 45.4 bits (106), Expect = 2e-04
Identities = 65/369 (17%), Positives = 126/369 (34%), Gaps = 15/369 (4%)
Query: 156 ESEEEEREERSGLQLSLEQGTGENSFRSLTWPPSGSPSHAGTTPPENGLSEHPCETEQIN 215
ES+ + + +S S + +NS S + S S + ++ + S +
Sbjct: 630 ESDSSDSDSKSDSSDSNSSDSSDNSDSSDSSNSSNSSDSSDSSDSSDSSSSSDSSNSSDS 689
Query: 216 AKRKDTTSDKDDSLGSQQTNEQCAQKAEPTESCEQIAVQVNNGDAGREMPCPLPCDEESP 275
+ D+++ + S S ++ + ++ + S + N+ D+ D
Sbjct: 690 SDSSDSSNSSESSDSSDSSDSDSSDSSDSSNSNSSDSDSSNSSDSSDSSNSSDSSDSSDS 749
Query: 276 EAELHNHGIQINSCSVRLVDIKKEKPFSNSKVECQAQARTHHNQASDIIVISSEDSEGST 335
+ +S S D S+S + ++ + +SD SS S+ S
Sbjct: 750 SNSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSNDSSNSSDSSD----SSNSSDSSN 805
Query: 336 DVDEPLEVFISAPRSEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESF 395
D S S ++ N +S+D +++ S D S S
Sbjct: 806 SSDSSDSSDSSDSDSSNSSDSSNSSDSSDSSNSSDSSDSSDSSDGSDSDSSNRSDSSNSS 865
Query: 396 KKRVIGQDHDFSESSEEEAPAEASSGALRSKHGEKAPMTSRSTSTWRIPSRKRRFSSSDF 455
+ S+SS+ E+S+ + S + S +S +SSD
Sbjct: 866 DSSDSSDSSNSSDSSDSSDSNESSNSSDSSDSSNSSDSDSSDSS-----------NSSDS 914
Query: 456 SDLSNGEELQETCSSSLRRGSGSQPQEPENKKCSCVMCFPKGVPRSQEARTESSQASDMM 515
SD SN + E+ +SS S ++ S S + + S S+
Sbjct: 915 SDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSS 974
Query: 516 DTMDVENNS 524
D+ D N+S
Sbjct: 975 DSSDSSNSS 983
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 49.7 bits (117), Expect = 1e-05
Identities = 55/259 (21%), Positives = 105/259 (40%), Gaps = 25/259 (9%)
Query: 364 DEKEGQEATCSRPQIVPEPMDFRKLSTFRESFKKRVIGQDHDFSESSEEEAPAEASSGAL 423
++ +G E + ++V + R+ ++ S R + S S + SS +
Sbjct: 158 EKLDGTEVNGRKIRLVEDKPGSRRRRSYSRS---RSHSRSRSRSRHSRKSRSRSGSSKSS 214
Query: 424 RSKHGEKAPMTSRSTSTWRIPSRKRRFSSSDFSDLSNGEELQETCSSSLRRGSGSQPQ-- 481
SK ++ SRS S R S+ R S + S + E+ + S+ + S S+ Q
Sbjct: 215 HSKSRSRSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAE 274
Query: 482 ----------EPENKKCSCVMCFPKGVPRSQEARTESSQASDMM----DTMDVENNSTLE 527
+P+++ S K RSQE R E + + + + +
Sbjct: 275 EKIQNNDNVGKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRS 334
Query: 528 KHSGKRRKKRRHRSKVNGLQRGRKKDRPRKHLTLNNKVQKKRWQQRGRKANTRPLKRRRK 587
+ G R + R RSK ++GRK+ R ++ + +R ++RG K +++ ++K
Sbjct: 335 RSKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKK 394
Query: 588 RGPRIPKDENINFKQSELP 606
K E+ + QS P
Sbjct: 395 ------KKEDTDRSQSRSP 407
Score = 47.8 bits (112), Expect = 5e-05
Identities = 59/328 (17%), Positives = 116/328 (35%), Gaps = 31/328 (9%)
Query: 283 GIQINSCSVRLVDIK----KEKPFSNSKVECQAQARTHHNQASDIIVISSEDSEGSTDVD 338
G ++N +RLV+ K + + +S S+ ++++R+ H++ S SS+ S
Sbjct: 162 GTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSK---- 217
Query: 339 EPLEVFISAPRSEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESFKKR 398
S RS + + S Q + S+ + P + S + K R
Sbjct: 218 -------SRSRSR----SGSRSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSR 266
Query: 399 VIGQDHDFSESSEEEAPAEASSGALRSKHGEKAPMTSRSTSTWRIPSRKRRFSSSDFSDL 458
S+++A + + K ++P +S S R S++RR +
Sbjct: 267 ---------SKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSV 317
Query: 459 SNGEELQETCSSSLRRGSGSQPQEPENKKCSCVMCFPKGVPRSQEARTESSQASDMMDTM 518
S G +++ S R ++ S KG RS+E S++ +
Sbjct: 318 SRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERS 377
Query: 519 DVENNSTLEKHSGKRRKKRRHRSKVNGLQRGRKKDRPRKHLTLNNKVQKKRWQQRGRKAN 578
+ K ++KK+ + R + R+H + ++ R + N
Sbjct: 378 RKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKEREHAKSESSQREGRGESENAGTN 437
Query: 579 TRPLKRRR---KRGPRIPKDENINFKQS 603
R R K P +P + K +
Sbjct: 438 QETRSRSRSNSKSKPNLPSESRSRSKSA 465
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 49.3 bits (116), Expect = 2e-05
Identities = 110/464 (23%), Positives = 165/464 (35%), Gaps = 74/464 (15%)
Query: 162 REERSGLQLSLEQGTGENSFRSLTWPPSGSPSHAGTTPPENGLSEHPCETEQINAKRKDT 221
R RSG L G+G S SL+ G T P G SE C++ T
Sbjct: 1437 RRSRSGSSPGLRDGSGTPSRHSLSGSSPGMKDIPRT--PSRGRSE--CDSSPEPKALPQT 1492
Query: 222 TSDKDDSLGSQQTNEQCAQKAEPTESCEQIAVQVNNGDAGREMPCPLPCDEESPEAELHN 281
+ S S + N +C E V+ R PL
Sbjct: 1493 PRPRSRSPSSPELNNKCLTPQRERSGSES---SVDQKTVART---PL------------- 1533
Query: 282 HGIQINSCSVRLVDIK-----KEKPFSNSKVECQAQARTHHNQASDIIVISSEDSEGSTD 336
G + S S + +D+K +E+ S+S + +A+ RT Q S S D
Sbjct: 1534 -GQRSRSGSSQELDVKPSASPQERSESDSSPDSKAKTRTPLRQRS------RSGSSPEVD 1586
Query: 337 VDEPLEVFISAPRSEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFRKLSTFRESFK 396
L S S P + D P + + G +++ P+ P P + S S K
Sbjct: 1587 SKSRLSPRRSRSGSSPEVK-DKPRAAPRAQSGSDSS-PEPK-APAPRALPRRSRSGSSSK 1643
Query: 397 KRVIGQDHDFSESSEEEAPAEASSGALRSKHGEKAPMTSRSTSTWRIPSR-------KRR 449
R + S S E P ++ + A R P T T R SR K R
Sbjct: 1644 GRGPSPEGSSSTESSPEHPPKSRT-ARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKAR 1702
Query: 450 FSSSDFSDLSNGE------------------ELQETCSSSLRRGSGSQPQ-EPENKKCSC 490
S S S+ E E E SS RR S S P+ + +++
Sbjct: 1703 LSRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRS 1762
Query: 491 VMCFPKGVPRSQ-EARTESSQASDMMDTMDVENNSTLEKHSGKRRKKRRHRSKVNGLQRG 549
P+G+ RS+ +R E ++ + D S + + +RR++ R RS+V +RG
Sbjct: 1763 PSPKPRGLQRSRSRSRREKTRTTRRRD------RSGSSQSTSRRRQRSRSRSRVTRRRRG 1816
Query: 550 RKKDRPRKHLTLNNKVQKKRWQQRGRKANTRPLKRRRKRGPRIP 593
R + R ++RGR + T P R+R R P
Sbjct: 1817 GSGYHSRSPARQESSRTSSR-RRRGR-SRTPPTSRKRSRSRTSP 1858
Score = 38.1 bits (87), Expect = 0.036
Identities = 58/255 (22%), Positives = 95/255 (37%), Gaps = 35/255 (13%)
Query: 380 PEPMDFRKLSTFRESFKKRVIGQDHDFSESSEEEAPAEASSGALRSKHGEKAPMT----- 434
PEP + R S ++R + S +P+ G RS+ + T
Sbjct: 1733 PEPAE-----KSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRR 1787
Query: 435 ------SRSTSTWRIPSR------KRRFSSSDFSDLSNGEELQETCSSSLRRGSGSQPQE 482
S+STS R SR +RR S + S + SS RRG P
Sbjct: 1788 RDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTP-- 1845
Query: 483 PENKKCSCVMCFPKGVPRSQEARTESSQASDMMDTMDVENNSTLEKHSGKRRKKRRHRSK 542
P ++K S P RS+ + ++ T + + + S R++ R R+
Sbjct: 1846 PTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTS 1905
Query: 543 VNGLQRGRKKDRP---RKHLTLNNKVQKKRWQ------QRGRKANTRPLKRRRKRGPRIP 593
V +R R + P R+ + V ++R + +R ++ T P+ RRR R R P
Sbjct: 1906 VT-RRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRS-RTP 1963
Query: 594 KDENINFKQSELPVT 608
+ P+T
Sbjct: 1964 PVTRRRSRSRTSPIT 1978
Score = 35.8 bits (81), Expect = 0.18
Identities = 39/185 (21%), Positives = 68/185 (36%), Gaps = 7/185 (3%)
Query: 409 SSEEEAPAEASSGALRSKHGEKAPMTSRSTSTWRIPSRKRRFSSSDFSDLSNGEELQETC 468
+S + + + S + +P T R + + R P RR S S S +S T
Sbjct: 1847 TSRKRSRSRTSPAPWKRSRSRASPATHRRSRS-RTPLISRRRSRSRTSPVSRRRSRSRTS 1905
Query: 469 SSSLRRGSGSQPQEPENKKCSCVMCFPKGVPRSQEARTESSQASDMMDTMDVENNSTLEK 528
+ R S + P + P R +RT +++ T V + +
Sbjct: 1906 VTRRRSRSRASPVSRRRSRSRT----PPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSR 1961
Query: 529 HSGKRRKKRRHRSKVNGLQRGRKKDRPRKHLTLNNKVQKKRWQQRGRKANTRPLKRRRKR 588
R RR RS+ + + R R + R ++ + +R ++ T P+ RRR R
Sbjct: 1962 TPPVTR--RRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSR 2019
Query: 589 GPRIP 593
P
Sbjct: 2020 SRTPP 2024
Score = 32.3 bits (72), Expect = 2.0
Identities = 36/139 (25%), Positives = 47/139 (33%), Gaps = 33/139 (23%)
Query: 153 PLQESEEEEREERSGL-QLSLEQGTGENSFRSLTWPPSGSPSHAGTTPPENGLSEHPCET 211
P Q+S+ R RSG Q + T RS + PP S + + S HP
Sbjct: 786 PKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSPHP--- 842
Query: 212 EQINAKRKDTTSDKDDSLGSQQTNEQCAQKAEPTESCEQIAVQVNNGDAGREMPCPLPCD 271
K K T + S+ S Q NEQ P C
Sbjct: 843 -----KVKSGTPPRQGSITSPQANEQSVT------------------------PQRRSCF 873
Query: 272 EESPEAELHNHGIQINSCS 290
E SP+ EL + +SCS
Sbjct: 874 ESSPDPELKSRTPSRHSCS 892
Score = 32.0 bits (71), Expect = 2.6
Identities = 54/262 (20%), Positives = 91/262 (34%), Gaps = 26/262 (9%)
Query: 334 STDVDEPLEVFISAPRSEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFR--KLSTF 391
ST +P + P E ++ + S+ ++ S D L
Sbjct: 2512 STGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQ 2571
Query: 392 RESFKKRVIGQDHDFSESSEEEAPAEASSGALRSKHGEKAPMTSRSTSTWRIPSRKRRFS 451
E KRV E+ E P E + + + + +S S+S+ S S
Sbjct: 2572 PEVALKRVPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSS 2631
Query: 452 SSDFSDLSNGEELQETCSSSLRRGSGSQPQEPENKKCSCVMCFPKGVPRSQEAR--TESS 509
SS S S+ + S + G + P+ KK P G RS+ R +S
Sbjct: 2632 SSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKP------PPGERRSRSPRKPIDSL 2685
Query: 510 QASDMMDTMDVENNSTLEKHSGKRRKKRRHRSKVNGLQRGRKKD-RPRKHLTLNNKVQKK 568
+ S + VE + S + ++ S G +RG++ D R H
Sbjct: 2686 RDSRSLSYSPVERRRPSPQPS---PRDQQSSSSERGSRRGQRGDSRSPSH---------- 2732
Query: 569 RWQQRGRKANTRPLKRRRKRGP 590
++R + RP++ R R P
Sbjct: 2733 --KRRRETPSPRPMRHRSSRSP 2752
Score = 31.6 bits (70), Expect = 3.4
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 15/111 (13%)
Query: 470 SSLRRGSGSQPQEPENKKCSCVMCFPKGVPRSQEARTESSQASDMMDTMDVENNSTLEKH 529
S +R S S+ P+ KK K + + R+ESS + + +S +KH
Sbjct: 172 SLVRESSSSRSPTPKQKK--------KKKKKDRGRRSESSSPR-----RERKKSSKKKKH 218
Query: 530 SGKRR-KKRRHRSKVNGLQRGRKKDRPRKHLTLNNKVQKKRWQQRGRKANT 579
+ KKR+HRS +R + KD+ RK K R R A++
Sbjct: 219 RSESESKKRKHRSPTPKSKR-KSKDKKRKRSRSTTPAPKSRRAHRSTSADS 268
Score = 30.0 bits (66), Expect = 9.9
Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 500 RSQEART---ESSQASDMMDTMDVENNSTLEKHSGKRRKKRRHRSKVNGLQRGRKKDRPR 556
R++EA+ E + ++ + T ++ K++K R RS+ + +R RKK +
Sbjct: 156 RAREAKQPAPEPPKPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKK 215
Query: 557 KHLTLNNKVQKKRWQQRGRKANTRPLKRRRKR 588
K ++ +K++ + K+ + ++RKR
Sbjct: 216 KKHRSESESKKRKHRSPTPKSKRKSKDKKRKR 247
>gi|13699811 WHSC1L1 protein isoform long [Homo sapiens]
Length = 1437
Score = 47.0 bits (110), Expect = 8e-05
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 699 PENSNICEVCNKWGRLFCCDTCPRSFHEHCHIPSVEANKNPWSCIFCR 746
P +S + C K GRL CC++CP SFH C S+E + W+C C+
Sbjct: 908 PSSSASKKKCEKGGRLLCCESCPASFHPEC--LSIEMPEGCWNCNDCK 953
>gi|217330641 IWS1 homolog [Homo sapiens]
Length = 819
Score = 46.2 bits (108), Expect = 1e-04
Identities = 84/371 (22%), Positives = 145/371 (39%), Gaps = 48/371 (12%)
Query: 156 ESEEEEREERSGLQLSLEQ----GTGENSFRSLTWPPSGSPS------HAGTTPPENGLS 205
+SE EER E E G+ S + P S S + HA + E+ +
Sbjct: 94 DSESEERAEPPASDSENEDVNQHGSDSESEETRKLPGSDSENEELLNGHASDSENED-VG 152
Query: 206 EHPCETEQINAKRKDTTSDKD--DSLGSQ----QTNEQCAQKAEPTESCEQIAVQVNNGD 259
+HP +I +K SD + D+L Q ++ E +A +E+ E ++++ +
Sbjct: 153 KHPASDSEIEELQKSPASDSETEDALKPQISDSESEEPPRHQASDSENEEPPKPRMSDSE 212
Query: 260 AGREMPCPLPCDEESPEAELHNHGIQINS--CSVRLVDIKKEKP----FSNSKVECQAQA 313
+ E+P P D ES E H N R+ D + E P S+S+ E +
Sbjct: 213 S-EELPKPQVSDSESEEPPRHQASDSENEELPKPRISDSESEDPPRHQASDSENEELPKP 271
Query: 314 RTHHNQASDIIVISSEDSEGS---------TDVDEPLEVFISAPRSEPVINNDNPLESND 364
R +++ D + DSE ++ + P + S +E + ES+D
Sbjct: 272 RISDSESEDPPRNQASDSENEELPKPRVSDSESEGPQKGPASDSETEDASRHKQKPESDD 331
Query: 365 ----EKEGQEATCSRPQIVPEP-MDFRKLSTF---RESFKKRVIGQDHDFSESSEEEAPA 416
E +G++ + MD +K + E KK+ + D D E EE+
Sbjct: 332 DSDRENKGEDTEMQNDSFHSDSHMDRKKFHSSDSEEEEHKKQKMDSDEDEKEGEEEKVAK 391
Query: 417 EASSGALRSKHGEKAPMTSRSTSTWRIPSRKRRFSSSDFSDLSNGEELQETCSSSLRRGS 476
++ S+ EKA S R+ S S SD S E +T +S +
Sbjct: 392 RKAAVLSDSEDEEKA-----SAKKSRVVSDADDSDSDAVSDKSGKRE--KTIASDSEEEA 444
Query: 477 GSQPQEPENKK 487
G + + +N++
Sbjct: 445 GKELSDKKNEE 455
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,467,038
Number of Sequences: 37866
Number of extensions: 1903113
Number of successful extensions: 7407
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 282
Number of HSP's that attempted gapping in prelim test: 6166
Number of HSP's gapped (non-prelim): 1158
length of query: 885
length of database: 18,247,518
effective HSP length: 111
effective length of query: 774
effective length of database: 14,044,392
effective search space: 10870359408
effective search space used: 10870359408
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.