Guide to the Human Genome
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Name: LAMA3 Sequence: fasta or formatted (1668aa) NCBI GI: 189217428
Description:

laminin alpha 3 subunit isoform 4

Referenced in:

Netrins and Laminins

Other entries for this name:
alt prot [3277aa] laminin alpha 3 subunit isoform 3
alt prot [1724aa] laminin alpha 3 subunit isoform 2
alt prot [3333aa] laminin alpha 3 subunit isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         99           3
 C cysteine            2.6         43           1
 D aspartate           5.3         88           2
 E glutamate           5.5         91           2
 F phenylalanine       3.3         55           2
 G glycine             7.7        129           2
 H histidine           2.0         34           1
 I isoleucine          4.3         71           2
 K lysine              6.1        102           2
 L leucine            10.7        178           2
 M methionine          1.6         26           1
 N asparagine          6.1        101           3
 P proline             4.7         78           2
 Q glutamine           5.8         96           3
 R arginine            5.5         92           3
 S serine              8.6        144           3
 T threonine           5.8         96           2
 V valine              5.6         94           2
 W tryptophan          0.7         11           1
 Y tyrosine            2.4         40           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   laminin alpha 3 subunit isoform 4 
LAMA3                 0.987   laminin alpha 3 subunit isoform 2 
LAMA3                 0.965   laminin alpha 3 subunit isoform 3 
LAMA3                 0.952   laminin alpha 3 subunit isoform 1 
LAMA4                 0.225   laminin, alpha 4 isoform 1 precursor 
LAMA4                 0.225   laminin, alpha 4 isoform 2 precursor 
LAMA4                 0.225   laminin, alpha 4 isoform 2 precursor 
LAMA5                 0.205   laminin alpha 5 
LAMA2                 0.116   laminin alpha 2 subunit isoform b precursor 
LAMA2                 0.116   laminin alpha 2 subunit isoform a precursor 
LAMA1                 0.108   laminin, alpha 1 precursor 
HSPG2                 0.034   heparan sulfate proteoglycan 2 
LAMB2                 0.033   laminin, beta 2 precursor 
LAMB1                 0.033   laminin, beta 1 precursor 
LAMB4                 0.031   laminin, beta 4 
LAMC1                 0.030   laminin, gamma 1 precursor 
LAMC2                 0.030   laminin, gamma 2 isoform b precursor 
LAMC2                 0.030   laminin, gamma 2 isoform a precursor 
LAMC3                 0.027   laminin, gamma 3 precursor 
NTN4                  0.024   netrin 4 
MEGF9                 0.023   multiple EGF-like-domains 9 
USH2A                 0.022   usherin isoform B 
USH2A                 0.022   usherin isoform A 
NTN3                  0.021   netrin 3 
NTN1                  0.021   netrin 1 
NTNG1                 0.019   netrin G1 isoform 1 
NTN5                  0.019   netrin 5 
LAMB3                 0.017   laminin, beta 3 precursor 
LAMB3                 0.017   laminin, beta 3 precursor 
LAMB3                 0.017   laminin, beta 3 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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