Guide to the Human Genome
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Name: USP1 Sequence: fasta or formatted (785aa) NCBI GI: 31543910
Description:

ubiquitin specific protease 1

Referenced in:

Ubiquitin and Related Protein Modifications

Other entries for this name:
alt mRNA [785aa] ubiquitin specific protease 1
alt mRNA [785aa] ubiquitin specific protease 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.6         28           2
 C cysteine            2.3         18           1
 D aspartate           4.3         34           2
 E glutamate          11.3         89           3
 F phenylalanine       3.3         26           2
 G glycine             5.6         44           3
 H histidine           1.4         11           2
 I isoleucine          4.7         37           2
 K lysine              9.7         76           3
 L leucine             9.6         75           2
 M methionine          1.3         10           1
 N asparagine          6.5         51           2
 P proline             4.8         38           2
 Q glutamine           4.2         33           1
 R arginine            3.4         27           2
 S serine              9.9         78           2
 T threonine           5.5         43           2
 V valine              5.5         43           2
 W tryptophan          0.5          4           1
 Y tyrosine            2.5         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin specific protease 1 
USP1                  1.000   ubiquitin specific protease 1 
USP1                  1.000   ubiquitin specific protease 1 
USP12                 0.041   ubiquitin thiolesterase 12 
USP46                 0.041   ubiquitin specific peptidase 46 isoform 2 
USP46                 0.041   ubiquitin specific peptidase 46 isoform 1 
USP45                 0.039   ubiquitin specific peptidase 45 
USP16                 0.036   ubiquitin specific protease 16 isoform a 
USP16                 0.036   ubiquitin specific protease 16 isoform a 
USP16                 0.035   ubiquitin specific protease 16 isoform b 
USP3                  0.028   ubiquitin thiolesterase 3 
USP8                  0.027   ubiquitin specific peptidase 8 
USP8                  0.027   ubiquitin specific peptidase 8 
USP8                  0.027   ubiquitin specific peptidase 8 
USP42                 0.027   ubiquitin specific peptidase 42 
USP44                 0.027   ubiquitin thiolesterase 44 
USP44                 0.027   ubiquitin thiolesterase 44 
USP36                 0.026   ubiquitin specific peptidase 36 
USP22                 0.026   ubiquitin thiolesterase 22 
USP51                 0.026   ubiquitin specific protease 51 
USP48                 0.025   ubiquitin specific protease 48 isoform b 
USP48                 0.025   ubiquitin specific protease 48 isoform a 
USP40                 0.025   ubiquitin thioesterase 40 
USP2                  0.025   ubiquitin specific peptidase 2 isoform b 
USP2                  0.025   ubiquitin specific peptidase 2 isoform a 
USP27X                0.025   X-linked ubiquitin thioesterase 27 
USP49                 0.023   ubiquitin thioesterase 49 
USP21                 0.023   ubiquitin-specific protease 21 
USP21                 0.023   ubiquitin-specific protease 21 
LOC100288520          0.022   PREDICTED: hypothetical protein XP_002342486 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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