Guide to the Human Genome
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Name: SPTBN2 Sequence: fasta or formatted (2390aa) NCBI GI: 5902122
Description:

spectrin, beta, non-erythrocytic 2

Referenced in:

Spectrin and Plectin Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8        283           4
 C cysteine            1.0         24           2
 D aspartate           5.4        128           2
 E glutamate          10.7        255           4
 F phenylalanine       2.3         56           2
 G glycine             5.2        125           2
 H histidine           2.7         65           1
 I isoleucine          2.5         60           2
 K lysine              5.0        120           2
 L leucine            11.8        282           3
 M methionine          2.1         50           2
 N asparagine          2.7         64           2
 P proline             3.1         75           3
 Q glutamine           7.2        172           3
 R arginine            8.8        210           3
 S serine              5.3        127           3
 T threonine           3.9         94           3
 V valine              4.9        118           2
 W tryptophan          1.9         45           1
 Y tyrosine            1.5         37           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   spectrin, beta, non-erythrocytic 2 
SPTBN1                0.630   spectrin, beta, non-erythrocytic 1 isoform 1 
SPTBN1                0.580   spectrin, beta, non-erythrocytic 1 isoform 2 
SPTB                  0.512   spectrin beta isoform a 
SPTB                  0.485   spectrin beta isoform b 
SPTBN4                0.413   spectrin, beta, non-erythrocytic 4 isoform sigma1 [...
SPTBN5                0.194   spectrin, beta, non-erythrocytic 5 
SPTAN1                0.115   spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...
SPTAN1                0.114   spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...
SPTBN4                0.108   spectrin, beta, non-erythrocytic 4 isoform sigma5 [...
SPTA1                 0.098   spectrin, alpha, erythrocytic 1 
ACTN4                 0.089   actinin, alpha 4 
ACTN2                 0.087   actinin, alpha 2 
PLEC1                 0.087   plectin 1 isoform 3 
PLEC1                 0.086   plectin 1 isoform 1 
PLEC1                 0.086   plectin 1 isoform 7 
ACTN1                 0.086   actinin, alpha 1 isoform c 
ACTN1                 0.086   actinin, alpha 1 isoform a 
ACTN1                 0.086   actinin, alpha 1 isoform b 
PLEC1                 0.086   plectin 1 isoform 11 
PLEC1                 0.086   plectin 1 isoform 10 
PLEC1                 0.086   plectin 1 isoform 8 
PLEC1                 0.086   plectin 1 isoform 6 
PLEC1                 0.086   plectin 1 isoform 2 
ACTN3                 0.085   actinin, alpha 3 
LOC652460             0.069   PREDICTED: similar to plectin 1, partial 
DST                   0.062   dystonin isoform 4 
DST                   0.062   dystonin isoform 3 
DST                   0.062   dystonin isoform 2 
DST                   0.061   dystonin isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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