ACTN1 28222

Name: ACTN1	Sequence: fasta or formatted (892aa)		NCBI GI: 4501891
Description: actinin, alpha 1 isoform b		Referenced in: Spectrin and Plectin Families
Other entries for this name: alt prot [914aa] actinin, alpha 1 isoform a alt prot [887aa] actinin, alpha 1 isoform c
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.0 71 2 C cysteine 1.1 10 1 D aspartate 7.0 62 2 E glutamate 9.4 84 2 F phenylalanine 3.3 29 1 G glycine 4.6 41 1 H histidine 3.0 27 1 I isoleucine 6.8 61 2 K lysine 6.1 54 2 L leucine 9.4 84 3 M methionine 3.0 27 1 N asparagine 4.8 43 2 P proline 3.4 30 2 Q glutamine 5.8 52 2 R arginine 6.1 54 2 S serine 4.0 36 2 T threonine 5.6 50 2 V valine 3.9 35 2 W tryptophan 1.8 16 1 Y tyrosine 2.9 26 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 actinin, alpha 1 isoform b ACTN1 0.993 actinin, alpha 1 isoform a ACTN1 0.976 actinin, alpha 1 isoform c ACTN4 0.867 actinin, alpha 4 ACTN2 0.803 actinin, alpha 2 ACTN3 0.794 actinin, alpha 3 SPTBN1 0.236 spectrin, beta, non-erythrocytic 1 isoform 2 SPTBN1 0.236 spectrin, beta, non-erythrocytic 1 isoform 1 SPTB 0.228 spectrin beta isoform a SPTB 0.228 spectrin beta isoform b SPTBN2 0.226 spectrin, beta, non-erythrocytic 2 SPTBN4 0.213 spectrin, beta, non-erythrocytic 4 isoform sigma1 [... SPTBN5 0.179 spectrin, beta, non-erythrocytic 5 SPTAN1 0.148 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ... SPTAN1 0.148 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ... PLEC1 0.122 plectin 1 isoform 11 PLEC1 0.122 plectin 1 isoform 10 PLEC1 0.122 plectin 1 isoform 8 PLEC1 0.122 plectin 1 isoform 7 PLEC1 0.122 plectin 1 isoform 6 PLEC1 0.122 plectin 1 isoform 3 PLEC1 0.122 plectin 1 isoform 2 PLEC1 0.122 plectin 1 isoform 1 LOC652460 0.120 PREDICTED: similar to plectin 1, partial DST 0.118 dystonin isoform 4 DST 0.118 dystonin isoform 3 DST 0.118 dystonin isoform 2 DST 0.118 dystonin isoform 1 MACF1 0.113 microfilament and actin filament cross-linker protei... SPTA1 0.109 spectrin, alpha, erythrocytic 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.