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Search of human proteins with 30794246
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30794246 hypothetical protein LOC90736 [Homo sapiens]
(116 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30794246 hypothetical protein LOC90736 [Homo sapiens] 245 6e-66
gi|154350224 hypothetical protein LOC84923 isoform 2 [Homo sapiens] 80 5e-16
gi|154350246 hypothetical protein LOC84923 isoform 1 [Homo sapiens] 73 6e-14
gi|172072597 retinoblastoma-like 2 (p130) [Homo sapiens] 31 0.18
gi|7661950 SH2 domain binding protein 1 [Homo sapiens] 30 0.41
gi|7108336 cholinergic receptor, muscarinic 5 [Homo sapiens] 28 1.6
gi|9256602 protocadherin beta 10 precursor [Homo sapiens] 28 1.6
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 28 1.6
gi|8922631 exonuclease 3'-5' domain containing 2 [Homo sapiens] 28 2.0
gi|33636722 plasticity related gene 1 [Homo sapiens] 28 2.0
gi|25777657 CD200 receptor 1 isoform c [Homo sapiens] 27 2.7
gi|25777655 CD200 receptor 1 isoform b [Homo sapiens] 27 2.7
gi|4503993 growth hormone receptor precursor [Homo sapiens] 27 3.5
gi|60097902 filaggrin [Homo sapiens] 27 3.5
gi|6631095 minichromosome maintenance complex component 3 [Homo ... 27 3.5
gi|239754830 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 27 4.5
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 27 4.5
gi|28973785 forkhead box S1 [Homo sapiens] 27 4.5
gi|190886435 RALBP1 associated Eps domain containing 1 isoform a... 27 4.5
gi|50083281 KIAA1853 protein [Homo sapiens] 27 4.5
gi|190886437 RALBP1 associated Eps domain containing 1 isoform b... 27 4.5
gi|56676335 RAP1 interacting factor 1 [Homo sapiens] 27 4.5
gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens] 27 4.5
gi|50345997 E1A binding protein p300 [Homo sapiens] 26 5.9
gi|45504369 solute carrier family 24, member 5 [Homo sapiens] 26 5.9
gi|51558724 ADAM metallopeptidase with thrombospondin type 1 mot... 26 5.9
gi|13699256 protein phosphatase 1 regulatory inhibitor subunit 8... 26 5.9
gi|20336239 protein phosphatase 1 regulatory inhibitor subunit 8... 26 5.9
gi|27883882 P18SRP protein [Homo sapiens] 26 5.9
>gi|30794246 hypothetical protein LOC90736 [Homo sapiens]
Length = 116
Score = 245 bits (625), Expect = 6e-66
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MGGCPVRKRRRNGSKEGNHHSTQPKRNKRNPIFQDSQDTEVFSWSDNERSSSRINIPERA 60
MGGCPVRKRRRNGSKEGNHHSTQPKRNKRNPIFQDSQDTEVFSWSDNERSSSRINIPERA
Sbjct: 1 MGGCPVRKRRRNGSKEGNHHSTQPKRNKRNPIFQDSQDTEVFSWSDNERSSSRINIPERA 60
Query: 61 SGPEGNLNQIVTEPDANFPQFLHEGLSKPVYVINWFMSFGPEIKLNTSQQGRNQAV 116
SGPEGNLNQIVTEPDANFPQFLHEGLSKPVYVINWFMSFGPEIKLNTSQQGRNQAV
Sbjct: 61 SGPEGNLNQIVTEPDANFPQFLHEGLSKPVYVINWFMSFGPEIKLNTSQQGRNQAV 116
>gi|154350224 hypothetical protein LOC84923 isoform 2 [Homo sapiens]
Length = 186
Score = 79.7 bits (195), Expect = 5e-16
Identities = 42/77 (54%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 7 RKRRRNGSKEGNHHSTQPKRNKRNPIFQDSQDTEVF---SWSDNERSSSRINIPERASGP 63
RKRRRNG++E NH Q KR+ RNP+FQDS DTE S + SSS IN P+RASGP
Sbjct: 74 RKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTESSGSDSGGSSSSSSSSINSPDRASGP 133
Query: 64 EGNLNQIVTEPDANFPQ 80
EG+L+Q + N PQ
Sbjct: 134 EGSLSQTMAGSSPNTPQ 150
>gi|154350246 hypothetical protein LOC84923 isoform 1 [Homo sapiens]
Length = 207
Score = 72.8 bits (177), Expect = 6e-14
Identities = 42/98 (42%), Positives = 51/98 (52%), Gaps = 24/98 (24%)
Query: 7 RKRRRNGSKEGNHHSTQPKRNKRNPIFQDSQDTEVF------------------------ 42
RKRRRNG++E NH Q KR+ RNP+FQDS DTE
Sbjct: 74 RKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTETVPVMRNSKENRLRGNKAFCASSGSD 133
Query: 43 SWSDNERSSSRINIPERASGPEGNLNQIVTEPDANFPQ 80
S + SSS IN P+RASGPEG+L+Q + N PQ
Sbjct: 134 SGGSSSSSSSSINSPDRASGPEGSLSQTMAGSSPNTPQ 171
>gi|172072597 retinoblastoma-like 2 (p130) [Homo sapiens]
Length = 1139
Score = 31.2 bits (69), Expect = 0.18
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 7 RKRRRNGSKEGNHHSTQPKRNKRNPIFQDSQDTEVFSWSDNERSSSRINIPERASGP 63
RKRR +GS + H P ++ +DS S RSSS + +P+ +S P
Sbjct: 936 RKRRNSGSSDSRSHQNSPTELNKDRTSRDS--------SPVMRSSSTLPVPQPSSAP 984
>gi|7661950 SH2 domain binding protein 1 [Homo sapiens]
Length = 1173
Score = 30.0 bits (66), Expect = 0.41
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 5 PVRKRRRNGSKEGNHHSTQPKRNKRNPIFQDSQDTEVFSWSDNERSSSRINIPE-----R 59
P RKRR +GS++ ++ S Q R+ DS+ + SD+E N
Sbjct: 1090 PSRKRRPSGSEQSDNESVQSGRSHSGVSENDSRPASPSAESDHESERGSDNEGSGQGSGN 1149
Query: 60 ASGPEGNLNQ 69
S PEG+ N+
Sbjct: 1150 ESEPEGSNNE 1159
>gi|7108336 cholinergic receptor, muscarinic 5 [Homo sapiens]
Length = 532
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 43 SWSDNERSSSRINIPERASGPEGN 66
SWS + RS+S P +A+GP N
Sbjct: 270 SWSSSRRSTSTTGKPSQATGPSAN 293
>gi|9256602 protocadherin beta 10 precursor [Homo sapiens]
Length = 800
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 27 NKRNPIFQDSQDTEVFSWSDNERSSSRINIPERASGPEGNLNQI 70
N P+FQD + S + E ++ R+ ERA P+G LN I
Sbjct: 127 NDHAPVFQDKETVLKISENTAEGTAFRL---ERAQDPDGGLNGI 167
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 5 PVRKRRRNGSK-EGNHHSTQPKRNKRNPIFQDSQDTEVFSWSDNERSSSRINIPERASGP 63
P+R+R + ++ E + PKR ++ D+ D+E+ + ++ S S+ +P+R P
Sbjct: 1235 PLRQREESETRSESSDFEVVPKRRRQRGSETDT-DSEIHESASDKDSLSKGKLPKREERP 1293
Query: 64 EGNLNQIVTEPDANF 78
E N+ +P ++F
Sbjct: 1294 E---NKKPVKPHSSF 1305
>gi|8922631 exonuclease 3'-5' domain containing 2 [Homo sapiens]
Length = 496
Score = 27.7 bits (60), Expect = 2.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 7 RKRRRNGSKEGNHHSTQPKRNKRNPI 32
+K + +G GNH P+++KR P+
Sbjct: 193 KKSKMDGMVPGNHQGRDPRKHKRKPL 218
>gi|33636722 plasticity related gene 1 [Homo sapiens]
Length = 763
Score = 27.7 bits (60), Expect = 2.0
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 7 RKRRRNGSKEGNHHSTQPKRNKRNPIFQDSQDTEVFSWSDNERSSSR-----INIPERAS 61
RKR S E +HH R P+ +E S S + S+ R I IPER++
Sbjct: 685 RKRSNIDSNEHHHHGITTIRV--TPVEGSEIGSETLSISSSRDSTLRRKGNIILIPERSN 742
Query: 62 GPEGNLN 68
PE N
Sbjct: 743 SPENTRN 749
>gi|25777657 CD200 receptor 1 isoform c [Homo sapiens]
Length = 165
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 17 GNHHSTQPKRNKRNPIFQDSQDTEVFSWSDNERSSSRINIPERASGPEGNLNQIVTEPDA 76
G T+ + + N + + E +W +S + I A +G I+ PD
Sbjct: 80 GQPSCTKAYKKETNETKETNCTDERITWVSRPDQNSDLQIRTVAITHDGYYRCIMVTPDG 139
Query: 77 NFPQFLH-EGLSKPVYVINWFMS 98
NF + H + L K +++ +F S
Sbjct: 140 NFHRGYHLQVLGKEHHILRYFTS 162
>gi|25777655 CD200 receptor 1 isoform b [Homo sapiens]
Length = 188
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 17 GNHHSTQPKRNKRNPIFQDSQDTEVFSWSDNERSSSRINIPERASGPEGNLNQIVTEPDA 76
G T+ + + N + + E +W +S + I A +G I+ PD
Sbjct: 103 GQPSCTKAYKKETNETKETNCTDERITWVSRPDQNSDLQIRTVAITHDGYYRCIMVTPDG 162
Query: 77 NFPQFLH-EGLSKPVYVINWFMS 98
NF + H + L K +++ +F S
Sbjct: 163 NFHRGYHLQVLGKEHHILRYFTS 185
>gi|4503993 growth hormone receptor precursor [Homo sapiens]
Length = 638
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 35 DSQDTEVFSWSDNERSSSRINIPERASGPEGNLNQIVTEPDANFPQFLHEGLSK 88
+ DT+ SD+E+S S + + + SG + E D N +HEG S+
Sbjct: 358 EESDTDRLLSSDHEKSHSNLGVKDGDSGRTSCCEPDILETDFN-ANDIHEGTSE 410
>gi|60097902 filaggrin [Homo sapiens]
Length = 4061
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 13 GSKEGNHHSTQPKRNKRNPIFQDSQDT 39
G ++G+HH Q + N R+ QD QDT
Sbjct: 815 GVRQGSHHE-QARDNSRHSASQDGQDT 840
>gi|6631095 minichromosome maintenance complex component 3 [Homo
sapiens]
Length = 808
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 25 KRNKRNPIFQDSQDTEVFSWSDNERSSSRINIPERASGPEGNLNQIVTEPDANFPQF 81
+R R P +D + + +SD E +++ P+ A E +Q V ++ F
Sbjct: 691 RRKTRQPDAKDGDSYDPYDFSDTEEEMPQVHTPKTADSQETKESQKVELSESRLKAF 747
>gi|239754830 PREDICTED: hypothetical protein [Homo sapiens]
Length = 320
Score = 26.6 bits (57), Expect = 4.5
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 79 PQFLHEGLSKPVYVINW 95
PQFL EGL P VI W
Sbjct: 229 PQFLGEGLQAPEVVIGW 245
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Query: 7 RKRRRNGSKEGNHHSTQPKRNKRNPIFQDSQ-----------DTEVFSWSDNERSSSRIN 55
+K +++ +K+ + K+ KR P +S+ +++ F D+E S+ +
Sbjct: 109 KKHKKHKNKKKKKKKEKEKKYKRQPEESESKTKSHDDGNIDLESDSFLKFDSEPSAVALE 168
Query: 56 IPERASGP 63
+P RA GP
Sbjct: 169 LPTRAFGP 176
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Query: 7 RKRRRNGSKEGNHHSTQPKRNKRNPIFQDSQ-----------DTEVFSWSDNERSSSRIN 55
+K +++ +K+ + K+ KR P +S+ +++ F D+E S+ +
Sbjct: 109 KKHKKHKNKKKKKKKEKEKKYKRQPEESESKTKSHDDGNIDLESDSFLKFDSEPSAVALE 168
Query: 56 IPERASGP 63
+P RA GP
Sbjct: 169 LPTRAFGP 176
>gi|28973785 forkhead box S1 [Homo sapiens]
Length = 330
Score = 26.6 bits (57), Expect = 4.5
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 3 GCPVRKRRRNGSKEGNHHSTQPKRNKRNPIFQDSQDTEVFSWSDNERSSSRINIPERASG 62
G +R+RRR + G + P + +R P+ SQD V N + + + P
Sbjct: 105 GSFLRRRRRFTRQTGAEGTRGPAKARRGPLRATSQDPGV----PNATTGRQCSFPPELPD 160
Query: 63 PEG 65
P+G
Sbjct: 161 PKG 163
>gi|190886435 RALBP1 associated Eps domain containing 1 isoform a
[Homo sapiens]
Length = 795
Score = 26.6 bits (57), Expect = 4.5
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 19 HHSTQPKRNKRNPIFQDSQDTEVFSWS------DNERSSSRINIP-ERASGPEGNLNQIV 71
H ST P++ P F D EVF+ S D+E +P E+AS P +L
Sbjct: 612 HTSTSPQQIPEQPNFADFSQFEVFAASNVNDEQDDEAEKHPEVLPAEKASDPASSLRVAK 671
Query: 72 TE 73
T+
Sbjct: 672 TD 673
>gi|50083281 KIAA1853 protein [Homo sapiens]
Length = 611
Score = 26.6 bits (57), Expect = 4.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 8 KRRRNGSKEGNHHSTQPKRNKRN 30
KRRR+ SK+ H S+ PK +R+
Sbjct: 143 KRRRSFSKKRRHSSSSPKSKRRD 165
>gi|190886437 RALBP1 associated Eps domain containing 1 isoform b
[Homo sapiens]
Length = 769
Score = 26.6 bits (57), Expect = 4.5
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 19 HHSTQPKRNKRNPIFQDSQDTEVFSWS------DNERSSSRINIP-ERASGPEGNLNQIV 71
H ST P++ P F D EVF+ S D+E +P E+AS P +L
Sbjct: 586 HTSTSPQQIPEQPNFADFSQFEVFAASNVNDEQDDEAEKHPEVLPAEKASDPASSLRVAK 645
Query: 72 TE 73
T+
Sbjct: 646 TD 647
>gi|56676335 RAP1 interacting factor 1 [Homo sapiens]
Length = 2472
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 52 SRINIPERASGPEGNLNQIVTEPDANFPQFLHEGLSKP 89
S I+I AS P+GN + T P N +H+G S P
Sbjct: 367 STISIDSNAS-PQGNSCHVATSPGLNPMTPVHKGASSP 403
>gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]
Length = 1603
Score = 26.6 bits (57), Expect = 4.5
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 2 GGCPVRKRRRNGSKEGNHHSTQPKRNKRNPIFQDSQDTEVFSWSDNERSSSRINIPERAS 61
G C +K R + + PK NP+FQDS D + +S + S S + RA
Sbjct: 1278 GACSAKKERGGAAAKAKFI---PKPQPVNPLFQDSPDLGLDYYS-GDSSMSPLPSQSRAF 1333
Query: 62 G 62
G
Sbjct: 1334 G 1334
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 26.2 bits (56), Expect = 5.9
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 9 RRRNGSKEGNHHSTQPKRNKRNPIFQD-SQDTEVFSWSDNERSSSRINIPERASGPEGNL 67
+++N K + S+ + NK+ P + S D ++ E+ + +GP N
Sbjct: 1549 KKKNNKKTSKNKSSLSRGNKKKPGMPNVSNDLSQKLYATMEKHKEVFFVIRLIAGPAANS 1608
Query: 68 NQIVTEPDANFPQFLHEG 85
+ +PD P L +G
Sbjct: 1609 LPPIVDPDPLIPCDLMDG 1626
>gi|45504369 solute carrier family 24, member 5 [Homo sapiens]
Length = 500
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 44 WSDNERSSSRINIPERASGPEGNLNQIVTEPDANFPQ 80
W+ S ++P+R GN Q V P + FP+
Sbjct: 20 WATAHLPLSGTSLPQRLPRATGNSTQCVISPSSEFPE 56
>gi|51558724 ADAM metallopeptidase with thrombospondin type 1 motif,
12 preproprotein [Homo sapiens]
Length = 1594
Score = 26.2 bits (56), Expect = 5.9
Identities = 19/95 (20%), Positives = 37/95 (38%)
Query: 13 GSKEGNHHSTQPKRNKRNPIFQDSQDTEVFSWSDNERSSSRINIPERASGPEGNLNQIVT 72
G K+ STQP+ + R I S + + S N+ +GP + T
Sbjct: 1063 GGKQWQDSSTQPELSSRYLISTGSTSQPILTSQSLSIQPSEENVSSSDTGPTSEGGLVAT 1122
Query: 73 EPDANFPQFLHEGLSKPVYVINWFMSFGPEIKLNT 107
+ ++ PV ++ GPE+++++
Sbjct: 1123 TTSGSGLSSSRNPITWPVTPFYNTLTKGPEMEIHS 1157
>gi|13699256 protein phosphatase 1 regulatory inhibitor subunit 8
isoform alpha [Homo sapiens]
Length = 351
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 15 KEGNHHSTQPKRNKRNPIFQDSQDTEVFSWSDNERSSSR 53
+EGN +PKR ++N S+D E+ + D + S R
Sbjct: 183 EEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGR 221
>gi|20336239 protein phosphatase 1 regulatory inhibitor subunit 8
isoform beta/delta [Homo sapiens]
Length = 209
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 15 KEGNHHSTQPKRNKRNPIFQDSQDTEVFSWSDNERSSSR 53
+EGN +PKR ++N S+D E+ + D + S R
Sbjct: 41 EEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGR 79
>gi|27883882 P18SRP protein [Homo sapiens]
Length = 155
Score = 26.2 bits (56), Expect = 5.9
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 7 RKRRRNGSKEGNHHSTQPKRNKR 29
+K +++ SK+G HH + K+ K+
Sbjct: 118 KKEKKSKSKKGKHHKKEKKKRKK 140
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.131 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,025,281
Number of Sequences: 37866
Number of extensions: 213189
Number of successful extensions: 569
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 545
Number of HSP's gapped (non-prelim): 46
length of query: 116
length of database: 18,247,518
effective HSP length: 86
effective length of query: 30
effective length of database: 14,991,042
effective search space: 449731260
effective search space used: 449731260
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.