Guide to the Human Genome
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Name: FAM104B Sequence: fasta or formatted (116aa) NCBI GI: 30794246
Description:

hypothetical protein LOC90736

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.6          3           1
 C cysteine            0.9          1           1
 D aspartate           3.4          4           1
 E glutamate           6.9          8           1
 F phenylalanine       5.2          6           1
 G glycine             7.8          9           2
 H histidine           2.6          3           2
 I isoleucine          5.2          6           1
 K lysine              5.2          6           1
 L leucine             3.4          4           1
 M methionine          1.7          2           1
 N asparagine         10.3         12           1
 P proline             7.8          9           1
 Q glutamine           6.9          8           2
 R arginine            8.6         10           3
 S serine             10.3         12           3
 T threonine           3.4          4           1
 V valine              5.2          6           1
 W tryptophan          1.7          2           1
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC90736 
FAM104A               0.250   hypothetical protein LOC84923 isoform 2 
FAM104A               0.218   hypothetical protein LOC84923 isoform 1 
RBL2                  0.027   retinoblastoma-like 2 (p130) 
CTR9                  0.023   SH2 domain binding protein 1 
CHRM5                 0.014   cholinergic receptor, muscarinic 5 
PCDHB10               0.014   protocadherin beta 10 precursor 
BAT2D1                0.014   HBxAg transactivated protein 2 
EXD2                  0.014   exonuclease 3'-5' domain containing 2 
LPPR4                 0.014   plasticity related gene 1 
CD200R1               0.009   CD200 receptor 1 isoform c 
CD200R1               0.009   CD200 receptor 1 isoform b 
GHR                   0.009   growth hormone receptor precursor 
FLG                   0.009   filaggrin 
MCM3                  0.009   minichromosome maintenance complex component 3 
LOC100293126          0.009   PREDICTED: hypothetical protein 
SON                   0.009   SON DNA-binding protein isoform F 
SON                   0.009   SON DNA-binding protein isoform B 
FOXS1                 0.009   forkhead box S1 
REPS1                 0.009   RALBP1 associated Eps domain containing 1 isoform a...
KIAA1853              0.009   KIAA1853 protein 
REPS1                 0.009   RALBP1 associated Eps domain containing 1 isoform b...
RIF1                  0.009   RAP1 interacting factor 1 
AHDC1                 0.009   AT hook, DNA binding motif, containing 1 
EP300                 0.005   E1A binding protein p300 
SLC24A5               0.005   solute carrier family 24, member 5 
ADAMTS12              0.005   ADAM metallopeptidase with thrombospondin type 1 mot...
PPP1R8                0.005   protein phosphatase 1 regulatory inhibitor subunit 8...
PPP1R8                0.005   protein phosphatase 1 regulatory inhibitor subunit 8...
SFRS12IP1             0.005   P18SRP protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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