Guide to the Human Genome
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Name: REPS1 Sequence: fasta or formatted (769aa) NCBI GI: 190886437
Description:

RALBP1 associated Eps domain containing 1 isoform b

Referenced in:

Additional Interaction Domain Families

Other entries for this name:
alt prot [795aa] RALBP1 associated Eps domain containing 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         60           2
 C cysteine            0.4          3           1
 D aspartate           5.7         44           2
 E glutamate           6.5         50           2
 F phenylalanine       3.1         24           2
 G glycine             5.1         39           2
 H histidine           2.6         20           1
 I isoleucine          3.1         24           1
 K lysine              4.9         38           2
 L leucine             7.2         55           2
 M methionine          1.2          9           1
 N asparagine          3.4         26           1
 P proline            10.7         82           6
 Q glutamine           6.0         46           3
 R arginine            4.8         37           3
 S serine             12.0         92           3
 T threonine           6.2         48           2
 V valine              6.8         52           3
 W tryptophan          0.9          7           1
 Y tyrosine            1.7         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RALBP1 associated Eps domain containing 1 isoform b... 
REPS1                 0.986   RALBP1 associated Eps domain containing 1 isoform a...
REPS2                 0.225   RALBP1 associated Eps domain containing 2 isoform 2...
REPS2                 0.222   RALBP1 associated Eps domain containing 2 isoform 1...
ITSN1                 0.034   intersectin 1 isoform ITSN-s 
ITSN1                 0.034   intersectin 1 isoform ITSN-l 
EPS15L1               0.032   epidermal growth factor receptor pathway substrate 1...
EHD3                  0.030   EH-domain containing 3 
EHD1                  0.030   EH-domain containing 1 
EPS15                 0.030   epidermal growth factor receptor pathway substrate 15...
ITSN2                 0.029   intersectin 2 isoform 3 
ITSN2                 0.029   intersectin 2 isoform 1 
ITSN2                 0.029   intersectin 2 isoform 2 
EHD2                  0.029   EH-domain containing 2 
EHD4                  0.028   EH-domain containing 4 
MLL3                  0.024   myeloid/lymphoid or mixed-lineage leukemia 3 
MAP7D1                0.019   MAP7 domain containing 1 
SEC24B                0.017   SEC24 (S. cerevisiae) homolog B isoform a 
KIAA1429              0.016   hypothetical protein LOC25962 isoform 1 
KIAA1429              0.016   hypothetical protein LOC25962 isoform 2 
TTN                   0.015   titin isoform N2-A 
AKT1S1                0.015   AKT1 substrate 1 (proline-rich) 
AKT1S1                0.015   AKT1 substrate 1 (proline-rich) 
AKT1S1                0.015   AKT1 substrate 1 (proline-rich) 
SRRM2                 0.015   splicing coactivator subunit SRm300 
MYO16                 0.015   myosin heavy chain Myr 8 
SOS1                  0.014   son of sevenless homolog 1 
SEC24B                0.013   SEC24 (S. cerevisiae) homolog B isoform b 
FAM71E2               0.013   hypothetical protein LOC284418 
ZNF828                0.013   zinc finger protein 828 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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