Guide to the Human Genome
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Name: FAM104A Sequence: fasta or formatted (207aa) NCBI GI: 154350246
Description:

hypothetical protein LOC84923 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {186aa} hypothetical protein LOC84923 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         19           3
 C cysteine            1.0          2           1
 D aspartate           2.9          6           1
 E glutamate           4.3          9           2
 F phenylalanine       2.4          5           1
 G glycine            11.6         24           3
 H histidine           2.9          6           1
 I isoleucine          1.0          2           1
 K lysine              2.4          5           1
 L leucine             4.8         10           1
 M methionine          1.9          4           1
 N asparagine          5.3         11           1
 P proline             9.7         20           2
 Q glutamine           3.9          8           1
 R arginine           11.6         24           3
 S serine             15.5         32           8
 T threonine           5.8         12           2
 V valine              2.4          5           1
 W tryptophan          0.5          1           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC84923 isoform 1 
FAM104A               0.862   hypothetical protein LOC84923 isoform 2 
FAM104B               0.120   hypothetical protein LOC90736 
XYLT1                 0.045   xylosyltransferase I 
ARL6IP4               0.043   SRp25 nuclear protein isoform 3 
SRRM2                 0.040   splicing coactivator subunit SRm300 
ARL6IP4               0.038   SRp25 nuclear protein isoform 1 
SRRM1                 0.038   serine/arginine repetitive matrix 1 
BSN                   0.035   bassoon protein 
MARK4                 0.035   MAP/microtubule affinity-regulating kinase 4 
ARL6IP4               0.035   SRp25 nuclear protein isoform 4 
ARL6IP4               0.035   SRp25 nuclear protein isoform 2 
EHBP1L1               0.035   tangerin 
CTAG2                 0.033   cancer/testis antigen 2 isoform LAGE-1b 
ZNF318                0.033   zinc finger protein 318 
LOC100287063          0.033   PREDICTED: hypothetical protein 
HECA                  0.030   headcase 
FLJ37078              0.030   hypothetical protein LOC222183 
ATXN2                 0.030   ataxin 2 
C2orf16               0.030   hypothetical protein LOC84226 
DIP2B                 0.030   DIP2 disco-interacting protein 2 homolog B 
MAP3K12               0.030   mitogen-activated protein kinase kinase kinase 12 [H...
LOC643446             0.030   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.030   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.030   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.030   PREDICTED: similar to ribonucleic acid binding prote...
LOC100287737          0.028   PREDICTED: hypothetical protein XP_002343203 
LOC100287688          0.028   PREDICTED: hypothetical protein XP_002342270 
C19orf29              0.028   chromosome 19 open reading frame 29 
C19orf29              0.028   chromosome 19 open reading frame 29 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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