Guide to the Human Genome
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Name: CHRM5 Sequence: fasta or formatted (532aa) NCBI GI: 7108336
Description:

cholinergic receptor, muscarinic 5

Referenced in:

Acetylcholine

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         43           3
 C cysteine            3.2         17           1
 D aspartate           3.0         16           1
 E glutamate           4.9         26           2
 F phenylalanine       3.2         17           1
 G glycine             3.8         20           1
 H histidine           1.5          8           1
 I isoleucine          5.3         28           2
 K lysine              7.1         38           4
 L leucine             9.8         52           3
 M methionine          2.1         11           1
 N asparagine          4.3         23           2
 P proline             5.6         30           1
 Q glutamine           3.2         17           1
 R arginine            5.5         29           2
 S serine              7.7         41           3
 T threonine           8.1         43           2
 V valine              7.1         38           2
 W tryptophan          2.4         13           1
 Y tyrosine            4.1         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cholinergic receptor, muscarinic 5 
CHRM3                 0.474   cholinergic receptor, muscarinic 3 
CHRM1                 0.434   cholinergic receptor, muscarinic 1 
CHRM4                 0.353   cholinergic receptor, muscarinic 4 
CHRM2                 0.342   cholinergic receptor, muscarinic 2 
CHRM2                 0.342   cholinergic receptor, muscarinic 2 
CHRM2                 0.342   cholinergic receptor, muscarinic 2 
CHRM2                 0.342   cholinergic receptor, muscarinic 2 
CHRM2                 0.342   cholinergic receptor, muscarinic 2 
CHRM2                 0.342   cholinergic receptor, muscarinic 2 
CHRM2                 0.342   cholinergic receptor, muscarinic 2 
CHRM2                 0.342   cholinergic receptor, muscarinic 2 
HRH1                  0.159   histamine receptor H1 
HRH1                  0.159   histamine receptor H1 
HRH1                  0.159   histamine receptor H1 
HRH1                  0.159   histamine receptor H1 
HRH3                  0.123   histamine receptor H3 
ADRA2B                0.122   alpha-2B-adrenergic receptor 
HTR1B                 0.100   5-hydroxytryptamine (serotonin) receptor 1B 
ADRB2                 0.097   adrenergic, beta-2-, receptor, surface 
ADRA1B                0.097   alpha-1B-adrenergic receptor 
HTR1A                 0.096   5-hydroxytryptamine (serotonin) receptor 1A 
ADRA1D                0.096   alpha-1D-adrenergic receptor 
ADRB1                 0.093   beta-1-adrenergic receptor 
ADRA1A                0.093   alpha-1A-adrenergic receptor isoform 4 
ADRA1A                0.093   alpha-1A-adrenergic receptor isoform 1 
ADRA1A                0.093   alpha-1A-adrenergic receptor isoform 2 
ADRA1A                0.093   alpha-1A-adrenergic receptor isoform 3 
HTR1D                 0.093   5-hydroxytryptamine (serotonin) receptor 1D 
ADRA2A                0.091   alpha-2A-adrenergic receptor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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