Guide to the Human Genome
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Name: RBL2 Sequence: fasta or formatted (1139aa) NCBI GI: 172072597
Description:

retinoblastoma-like 2 (p130)

Referenced in:

E2F Pathways
RB1 and Related Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         68           4
 C cysteine            2.2         25           2
 D aspartate           4.5         51           2
 E glutamate           7.7         88           4
 F phenylalanine       4.0         45           2
 G glycine             5.1         58           2
 H histidine           2.0         23           1
 I isoleucine          5.2         59           2
 K lysine              5.5         63           2
 L leucine             8.3         95           3
 M methionine          2.2         25           2
 N asparagine          4.4         50           2
 P proline             7.3         83           8
 Q glutamine           5.4         61           3
 R arginine            6.7         76           3
 S serine              8.9        101           3
 T threonine           5.6         64           2
 V valine              5.5         63           2
 W tryptophan          0.7          8           1
 Y tyrosine            2.9         33           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   retinoblastoma-like 2 (p130) 
RBL1                  0.455   retinoblastoma-like protein 1 isoform a 
RBL1                  0.427   retinoblastoma-like protein 1 isoform b 
RB1                   0.074   retinoblastoma 1 
MUC17                 0.010   mucin 17 
FNBP4                 0.008   formin binding protein 4 
SRRM2                 0.008   splicing coactivator subunit SRm300 
SCAF1                 0.007   SR-related CTD-associated factor 1 
MUC4                  0.007   mucin 4 isoform a 
ADNP2                 0.006   ADNP homeobox 2 
PHF23                 0.006   PHD finger protein 23 
NFRKB                 0.006   nuclear factor related to kappaB binding protein is...
NFRKB                 0.006   nuclear factor related to kappaB binding protein iso...
SP4                   0.006   Sp4 transcription factor 
ABI2                  0.006   abl interactor 2 
C11orf30              0.006   EMSY protein 
FRMPD1                0.005   FERM and PDZ domain containing 1 
MUC16                 0.005   mucin 16 
UNCX                  0.005   UNC homeobox 
CREBBP                0.005   CREB binding protein isoform b 
CREBBP                0.005   CREB binding protein isoform a 
MUC5B                 0.005   mucin 5, subtype B, tracheobronchial 
FAM134B               0.005   hypothetical protein LOC54463 isoform 1 
SYN2                  0.005   synapsin II isoform IIa 
SYN2                  0.005   synapsin II isoform IIb 
SF3A1                 0.005   splicing factor 3a, subunit 1, 120kDa isoform 2 [Hom...
SF3A1                 0.005   splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo...
POU6F2                0.005   POU domain, class 6, transcription factor 2 
FAM186A               0.005   family with sequence similarity 186, member A [Homo...
GOLGA2                0.005   Golgi autoantigen, golgin subfamily a, 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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