Guide to the Human Genome
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Name: FAM104A Sequence: fasta or formatted (186aa) NCBI GI: 154350224
Description:

hypothetical protein LOC84923 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {207aa} hypothetical protein LOC84923 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         17           3
 C cysteine            0.5          1           1
 D aspartate           3.2          6           1
 E glutamate           4.3          8           2
 F phenylalanine       2.2          4           1
 G glycine            12.4         23           3
 H histidine           3.2          6           1
 I isoleucine          1.1          2           1
 K lysine              1.6          3           1
 L leucine             4.8          9           1
 M methionine          1.6          3           1
 N asparagine          4.3          8           1
 P proline            10.2         19           2
 Q glutamine           4.3          8           1
 R arginine           11.3         21           3
 S serine             16.7         31           8
 T threonine           5.9         11           2
 V valine              1.6          3           1
 W tryptophan          0.5          1           1
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC84923 isoform 2 
FAM104A               0.966   hypothetical protein LOC84923 isoform 1 
FAM104B               0.154   hypothetical protein LOC90736 
SRRM1                 0.062   serine/arginine repetitive matrix 1 
C15orf52              0.053   hypothetical protein LOC388115 
SRRM2                 0.053   splicing coactivator subunit SRm300 
BSN                   0.048   bassoon protein 
ATAD2B                0.048   ATPase family, AAA domain containing 2B 
BASP1                 0.045   brain abundant, membrane attached signal protein 1 [...
LOC100287063          0.045   PREDICTED: hypothetical protein 
KIAA0913              0.045   hypothetical protein LOC23053 
LOC100287063          0.042   PREDICTED: hypothetical protein XP_002342368 
TNRC18                0.042   trinucleotide repeat containing 18 
LOC100130174          0.042   PREDICTED: hypothetical protein 
PJA1                  0.042   praja 1 isoform c 
ARL6IP4               0.042   SRp25 nuclear protein isoform 4 
ARL6IP4               0.042   SRp25 nuclear protein isoform 2 
AFF4                  0.039   ALL1 fused gene from 5q31 
ITPKB                 0.039   1D-myo-inositol-trisphosphate 3-kinase B 
MCTP1                 0.039   multiple C2 domains, transmembrane 1 isoform L [Hom...
LOC100130174          0.037   PREDICTED: hypothetical protein 
LOC100130174          0.037   PREDICTED: hypothetical protein 
NOL3                  0.037   nucleolar protein 3 
PNN                   0.037   pinin, desmosome associated protein 
OGFR                  0.037   opioid growth factor receptor 
HPS1                  0.037   Hermansky-Pudlak syndrome 1 protein isoform a 
C19orf29              0.037   chromosome 19 open reading frame 29 
C19orf29              0.037   chromosome 19 open reading frame 29 
FLJ37078              0.037   hypothetical protein LOC222183 
SLC4A2                0.034   solute carrier family 4, anion exchanger, member 2 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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