Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SPRR2B Sequence: fasta or formatted (72aa) NCBI GI: 62955831
Description:

small proline-rich protein 2B

Referenced in:

Late Cornified Envelope Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.0          0           0
 C cysteine           15.3         11           1
 D aspartate           0.0          0           0
 E glutamate           2.8          2           1
 F phenylalanine       0.0          0           0
 G glycine             0.0          0           0
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine             11.1          8           1
 L leucine             0.0          0           0
 M methionine          1.4          1           1
 N asparagine          0.0          0           0
 P proline            38.9         28           3
 Q glutamine          16.7         12           4
 R arginine            0.0          0           0
 S serine              4.2          3           1
 T threonine           2.8          2           1
 V valine              2.8          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            4.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   small proline-rich protein 2B 
SPRR2A                0.981   small proline-rich protein 2A 
SPRR2D                0.955   small proline-rich protein 2D 
SPRR2E                0.955   small proline-rich protein 2E 
SPRR2F                0.904   small proline-rich protein 2F 
SPRR2G                0.758   small proline-rich protein 2G 
SPRR1A                0.268   small proline-rich protein 1A 
SPRR1B                0.255   small proline-rich protein 1B 
LOC100292632          0.242   PREDICTED: hypothetical protein 
LCE1A                 0.242   late cornified envelope 1A 
LCE1F                 0.242   late cornified envelope 1F 
LCE1E                 0.242   late cornified envelope 1E 
LCE5A                 0.242   late cornified envelope 5A 
LCE1C                 0.242   late cornified envelope 1C 
LCE2A                 0.223   late cornified envelope 2A 
LCE1D                 0.191   late cornified envelope 1D 
LCE1B                 0.191   late cornified envelope 1B 
LCE2D                 0.185   late cornified envelope 2D 
LELP1                 0.178   late cornified envelope-like proline-rich 1 
LCE2C                 0.172   late cornified envelope 2C 
FMNL1                 0.172   formin-like 1 
SPRR4                 0.172   small proline-rich protein 4 
LCE4A                 0.166   late cornified envelope 4A 
LCE2B                 0.166   late cornified envelope 2B 
RIN3                  0.166   Ras and Rab interactor 3 
MLL4                  0.159   myeloid/lymphoid or mixed-lineage leukemia 4 
MYST3                 0.159   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.159   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.159   MYST histone acetyltransferase (monocytic leukemia)...
HTT                   0.153   huntingtin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press