Guide to the Human Genome
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Name: SPRR2D Sequence: fasta or formatted (72aa) NCBI GI: 56699492
Description:

small proline-rich protein 2D

Referenced in:

Late Cornified Envelope Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.0          0           0
 C cysteine           16.7         12           1
 D aspartate           0.0          0           0
 E glutamate           2.8          2           1
 F phenylalanine       0.0          0           0
 G glycine             0.0          0           0
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine             11.1          8           1
 L leucine             0.0          0           0
 M methionine          1.4          1           1
 N asparagine          0.0          0           0
 P proline            37.5         27           3
 Q glutamine          16.7         12           4
 R arginine            0.0          0           0
 S serine              5.6          4           1
 T threonine           2.8          2           1
 V valine              2.8          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   small proline-rich protein 2D 
SPRR2E                0.968   small proline-rich protein 2E 
SPRR2B                0.962   small proline-rich protein 2B 
SPRR2A                0.942   small proline-rich protein 2A 
SPRR2F                0.917   small proline-rich protein 2F 
SPRR2G                0.724   small proline-rich protein 2G 
SPRR1A                0.276   small proline-rich protein 1A 
SPRR1B                0.263   small proline-rich protein 1B 
LCE5A                 0.244   late cornified envelope 5A 
LCE2A                 0.205   late cornified envelope 2A 
LOC100292632          0.192   PREDICTED: hypothetical protein 
LCE1A                 0.192   late cornified envelope 1A 
LCE1F                 0.192   late cornified envelope 1F 
LCE1E                 0.192   late cornified envelope 1E 
LCE1C                 0.192   late cornified envelope 1C 
SPRR4                 0.186   small proline-rich protein 4 
LCE1D                 0.173   late cornified envelope 1D 
LELP1                 0.173   late cornified envelope-like proline-rich 1 
LCE2B                 0.167   late cornified envelope 2B 
RIN3                  0.167   Ras and Rab interactor 3 
LCE1B                 0.154   late cornified envelope 1B 
LCE2D                 0.154   late cornified envelope 2D 
FMNL1                 0.154   formin-like 1 
LCE4A                 0.147   late cornified envelope 4A 
ZNF462                0.147   zinc finger protein 462 
MYST3                 0.147   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.147   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.147   MYST histone acetyltransferase (monocytic leukemia)...
LCE2C                 0.147   late cornified envelope 2C 
HTT                   0.141   huntingtin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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